Wall clock time and date at job start Mon Mar 30 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47063 * 2 1 4 4 C 1.42896 * 114.00185 * 179.97438 * 3 2 1 5 5 C 1.53778 * 113.61791 * 150.00220 * 4 3 2 6 6 C 1.53778 * 87.08138 * 89.20390 * 5 4 3 7 7 C 1.53000 * 113.61666 * 139.98557 * 6 5 4 8 8 C 1.50693 * 109.47270 * 176.52676 * 7 6 5 9 9 O 1.21281 * 120.00238 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00139 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99943 * 0.02562 * 10 8 7 12 12 C 1.46504 * 120.00329 * 180.02562 * 10 8 7 13 13 H 1.09004 * 109.46713 * 359.97438 * 12 10 8 14 14 C 1.53003 * 109.46852 * 240.00141 * 12 10 8 15 15 C 1.50694 * 109.47367 * 119.99460 * 12 10 8 16 16 H 1.08003 * 119.99607 * 35.00958 * 15 12 10 17 17 C 1.37878 * 120.00367 * 214.99999 * 15 12 10 18 18 N 1.31511 * 120.00066 * 184.91768 * 17 15 12 19 19 Si 1.86806 * 119.99396 * 4.92258 * 17 15 12 20 20 H 1.48505 * 109.47124 * 84.83522 * 19 17 15 21 21 H 1.48500 * 109.46620 * 204.83230 * 19 17 15 22 22 H 1.48490 * 109.47261 * 324.82948 * 19 17 15 23 23 C 1.53774 * 87.17224 * 25.39120 * 6 5 4 24 24 H 1.08998 * 109.47423 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47258 * 299.99779 * 1 2 3 26 26 H 1.09002 * 109.47395 * 59.99903 * 1 2 3 27 27 H 1.09001 * 109.47143 * 240.00762 * 2 1 3 28 28 H 1.09000 * 109.46902 * 120.00238 * 2 1 3 29 29 H 1.09006 * 112.84827 * 18.80683 * 4 3 2 30 30 H 1.09011 * 113.61165 * 334.65581 * 5 4 3 31 31 H 1.09004 * 113.61584 * 203.75586 * 5 4 3 32 32 H 1.09004 * 113.61327 * 270.80264 * 6 5 4 33 33 H 1.09004 * 109.46811 * 56.52529 * 7 6 5 34 34 H 1.09000 * 109.46558 * 296.53237 * 7 6 5 35 35 H 1.08998 * 109.47037 * 89.99699 * 11 10 8 36 36 H 1.09008 * 109.46850 * 329.99831 * 11 10 8 37 37 H 1.09003 * 109.47196 * 210.00567 * 11 10 8 38 38 H 1.08999 * 109.46969 * 294.97330 * 14 12 10 39 39 H 1.08995 * 109.47507 * 54.97163 * 14 12 10 40 40 H 1.09001 * 109.46887 * 174.97879 * 14 12 10 41 41 H 0.97005 * 119.99481 * 179.97438 * 18 17 15 42 42 H 1.09005 * 113.61506 * 89.15911 * 23 6 5 43 43 H 1.09004 * 113.61594 * 220.05728 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.9489 2.7252 -0.7038 6 6 3.8412 3.4321 0.6575 7 6 5.0039 4.3832 0.9480 8 6 4.7626 5.0861 2.2589 9 8 3.7596 4.8493 2.8983 10 7 5.6619 5.9771 2.7214 11 6 6.8738 6.2628 1.9493 12 6 5.4276 6.6600 3.9962 13 1 4.4825 6.3218 4.4212 14 6 5.3692 8.1709 3.7621 15 6 6.5501 6.3424 4.9500 16 1 7.5565 6.2192 4.5777 17 6 6.2926 6.2091 6.2980 18 7 7.2846 6.0281 7.1422 19 14 4.5345 6.2857 6.9249 20 1 3.9107 4.9425 6.8144 21 1 4.5342 6.7162 8.3461 22 1 3.7613 7.2590 6.1127 23 6 4.0025 2.0464 1.3043 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 3.9280 0.5456 -0.3229 30 1 3.2638 3.1180 -1.4553 31 1 4.9719 2.6338 -1.0688 32 1 2.8671 3.8872 0.8374 33 1 5.0785 5.1206 0.1486 34 1 5.9323 3.8150 1.0057 35 1 6.6815 7.0876 1.2633 36 1 7.1601 5.3773 1.3817 37 1 7.6814 6.5357 2.6286 38 1 6.3426 8.5236 3.4211 39 1 4.6169 8.3926 3.0052 40 1 5.1068 8.6730 4.6933 41 1 7.1033 5.9348 8.0906 42 1 5.0403 1.7691 1.4895 43 1 3.3608 1.8920 2.1718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188652710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:52 Heat of formation + Delta-G solvation = -90.761747 kcal Electronic energy + Delta-G solvation = -21211.515106 eV Core-core repulsion = 18063.564223 eV Total energy + Delta-G solvation = -3147.950883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13790 -40.04566 -37.48097 -36.87908 -34.72919 -32.74727 -31.87552 -30.14243 -27.55875 -27.27319 -26.59538 -24.60366 -23.73476 -22.40679 -20.42993 -19.79189 -19.23492 -17.77869 -17.48831 -17.10453 -16.70039 -16.45900 -16.17604 -15.85449 -15.25757 -14.67863 -14.44563 -14.35669 -14.18231 -13.88308 -13.72377 -13.36655 -13.28529 -13.14700 -13.10523 -12.90733 -12.84758 -12.66859 -12.32747 -12.29385 -12.09114 -11.84497 -11.69269 -11.42383 -11.28161 -10.98607 -10.80988 -10.52526 -10.35936 -9.28896 -8.39441 -6.42047 1.23334 1.29767 1.38616 1.87070 2.24804 2.38698 2.68714 3.03213 3.58507 3.70483 3.85973 3.93404 4.05200 4.18636 4.28620 4.40210 4.43624 4.48496 4.50094 4.65240 4.68048 4.71592 4.73738 4.75880 4.83478 4.88146 4.92344 4.95876 5.01186 5.05047 5.15677 5.19797 5.23706 5.32646 5.36694 5.51348 5.54163 5.86249 6.16820 6.39274 6.63303 6.83987 7.23747 7.47929 8.75905 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.004416 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.517013 B = 6338.786804 C = 6987.244293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.395 6.395 4 C 0.065 3.935 5 C -0.115 4.115 6 C -0.092 4.092 7 C -0.116 4.116 8 C 0.490 3.510 9 O -0.607 6.607 10 N -0.602 5.602 11 C 0.079 3.921 12 C 0.220 3.780 13 H 0.034 0.966 14 C -0.138 4.138 15 C -0.518 4.518 16 H 0.057 0.943 17 C 0.030 3.970 18 N -0.933 5.933 19 Si 0.924 3.076 20 H -0.288 1.288 21 H -0.275 1.275 22 H -0.254 1.254 23 C -0.161 4.161 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.268 0.732 42 H 0.100 0.900 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -8.727 -19.951 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.314 6.314 4 C 0.007 3.993 5 C -0.152 4.152 6 C -0.111 4.111 7 C -0.155 4.155 8 C 0.280 3.720 9 O -0.490 6.490 10 N -0.333 5.333 11 C -0.063 4.063 12 C 0.117 3.883 13 H 0.052 0.948 14 C -0.196 4.196 15 C -0.556 4.556 16 H 0.075 0.925 17 C -0.169 4.169 18 N -0.573 5.573 19 Si 0.750 3.250 20 H -0.215 1.215 21 H -0.200 1.200 22 H -0.179 1.179 23 C -0.199 4.199 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.179 -8.680 -19.427 22.157 hybrid contribution -0.532 -0.098 1.412 1.512 sum -6.711 -8.778 -18.015 21.134 Atomic orbital electron populations 1.21776 0.93269 1.03366 1.02401 1.22720 0.96151 0.82990 1.00828 1.87886 1.20959 1.27959 1.94633 1.23141 0.81040 0.99195 0.95926 1.23247 1.03080 0.93683 0.95214 1.22169 0.97553 0.93878 0.97534 1.21750 1.00777 0.99692 0.93319 1.21636 0.82340 0.79230 0.88761 1.90606 1.30825 1.65925 1.61656 1.48334 1.21833 1.41181 1.21961 1.21865 0.86375 1.02447 0.95597 1.19060 0.95920 0.90684 0.82661 0.94768 1.22056 1.01109 0.96232 1.00222 1.21392 0.95048 1.47616 0.91571 0.92486 1.25573 0.99779 0.94235 0.97321 1.69979 1.32830 1.50964 1.03511 0.86115 0.82037 0.78940 0.77948 1.21484 1.20022 1.17857 1.23610 1.01496 0.97259 0.97536 0.88902 0.93397 0.91875 0.91356 0.93539 0.88473 0.90338 0.85661 0.91780 0.86095 0.86750 0.90850 0.88963 0.92221 0.91769 0.93575 0.93517 0.92266 0.88183 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.05 0.92 6.50 71.98 0.47 1.39 16 3 O -0.39 -10.06 10.27 -148.98 -1.53 -11.59 16 4 C 0.06 1.39 4.38 31.18 0.14 1.52 16 5 C -0.12 -2.12 7.47 31.12 0.23 -1.89 16 6 C -0.09 -2.53 3.05 -10.27 -0.03 -2.56 16 7 C -0.12 -3.03 4.08 29.85 0.12 -2.91 16 8 C 0.49 19.68 7.67 87.65 0.67 20.35 16 9 O -0.61 -30.63 15.12 -3.03 -0.05 -30.67 16 10 N -0.60 -24.54 2.75 -826.77 -2.28 -26.81 16 11 C 0.08 2.36 9.39 127.77 1.20 3.56 16 12 C 0.22 10.74 2.30 44.24 0.10 10.84 16 13 H 0.03 1.89 4.05 -2.39 -0.01 1.88 16 14 C -0.14 -5.75 9.10 71.98 0.66 -5.09 16 15 C -0.52 -29.14 8.72 25.60 0.22 -28.91 16 16 H 0.06 3.39 6.82 -2.91 -0.02 3.37 16 17 C 0.03 1.79 5.47 84.66 0.46 2.26 16 18 N -0.93 -57.73 13.96 21.45 0.30 -57.43 16 19 Si 0.92 47.81 26.99 68.60 1.85 49.66 16 20 H -0.29 -15.59 7.11 99.48 0.71 -14.89 16 21 H -0.27 -13.46 7.11 99.48 0.71 -12.76 16 22 H -0.25 -12.63 6.82 99.48 0.68 -11.96 16 23 C -0.16 -4.42 7.48 31.18 0.23 -4.19 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.54 7.87 -2.38 -0.02 1.52 16 30 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.13 1.49 8.10 -2.38 -0.02 1.47 16 32 H 0.06 2.23 7.73 -2.38 -0.02 2.21 16 33 H 0.12 2.37 8.11 -2.39 -0.02 2.35 16 34 H 0.11 2.44 7.13 -2.39 -0.02 2.42 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 2.07 6.44 -2.38 -0.02 2.05 16 37 H 0.06 2.04 6.56 -2.39 -0.02 2.02 16 38 H 0.06 2.45 7.84 -2.39 -0.02 2.44 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 42 H 0.10 2.40 7.92 -2.38 -0.02 2.38 16 43 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -76.50 344.31 4.45 -72.05 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.94 Total: 12.17 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.22 Total: -7.38 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.98 Total: -84.24 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -1.58 Total: -42.26 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.85 Total: 49.66 kcal Total: -76.50 4.45 -72.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188652710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.708 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds