Wall clock time and date at job start Mon Mar 30 2020 01:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47535 * 2 1 4 4 C 1.42901 * 114.00258 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 4 3 2 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 4 3 7 7 C 1.52999 * 113.61451 * 220.01770 * 6 5 4 8 8 C 1.50699 * 109.47130 * 272.49762 * 7 6 5 9 9 O 1.21284 * 119.99980 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00176 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47047 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46906 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00133 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00065 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00155 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.47053 * 90.00347 * 18 16 14 20 20 H 1.48498 * 109.46954 * 210.00192 * 18 16 14 21 21 H 1.48501 * 109.47084 * 330.00087 * 18 16 14 22 22 C 1.53781 * 113.61413 * 208.47320 * 4 3 2 23 23 H 1.09008 * 109.46871 * 300.00023 * 1 2 3 24 24 H 1.09005 * 109.46855 * 59.99452 * 1 2 3 25 25 H 1.08992 * 109.47444 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47293 * 240.00060 * 2 1 3 27 27 H 1.09002 * 109.46988 * 119.99797 * 2 1 3 28 28 H 1.09002 * 112.84974 * 339.66626 * 4 3 2 29 29 H 1.09003 * 113.60734 * 254.54335 * 5 4 3 30 30 H 1.08996 * 113.61146 * 25.43833 * 5 4 3 31 31 H 1.09005 * 113.69135 * 89.12376 * 6 5 4 32 32 H 1.09003 * 109.47100 * 32.49589 * 7 6 5 33 33 H 1.08995 * 109.47213 * 152.50009 * 7 6 5 34 34 H 0.97002 * 119.99970 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.46915 * 299.99927 * 11 10 8 36 36 H 1.08995 * 109.47026 * 60.00119 * 11 10 8 37 37 H 1.09003 * 109.47100 * 299.99687 * 12 11 10 38 38 H 1.08998 * 109.46907 * 59.99688 * 12 11 10 39 39 H 1.09003 * 109.46945 * 299.99730 * 13 12 11 40 40 H 1.08995 * 109.47142 * 60.00012 * 13 12 11 41 41 H 0.96996 * 120.00037 * 180.02562 * 17 16 14 42 42 H 1.09005 * 113.61302 * 334.47944 * 22 4 3 43 43 H 1.08993 * 113.62030 * 105.38790 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0067 2.0106 -1.3160 6 6 4.9921 2.8184 -0.4551 7 6 5.2358 4.2379 -0.9712 8 6 6.3561 4.2205 -1.9791 9 8 6.9052 3.1755 -2.2574 10 7 6.7472 5.3660 -2.5718 11 6 7.8359 5.3490 -3.5520 12 6 8.0798 6.7685 -4.0680 13 6 9.2164 6.7506 -5.0921 14 6 9.4570 8.1489 -5.6000 15 1 8.8588 8.9683 -5.2297 16 6 10.4401 8.3820 -6.5382 17 7 10.6504 9.6023 -6.9810 18 14 11.4743 6.9646 -7.1792 19 1 10.8200 6.3756 -8.3750 20 1 12.8233 7.4636 -7.5485 21 1 11.6018 5.9279 -6.1236 22 6 3.9476 2.7433 0.6711 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9274 0.5544 0.3481 29 1 4.4870 1.2518 -1.9338 30 1 3.3049 2.6303 -1.8742 31 1 5.9159 2.2854 -0.2300 32 1 4.3281 4.6137 -1.4435 33 1 5.5069 4.8860 -0.1379 34 1 6.3079 6.2017 -2.3494 35 1 8.7439 4.9734 -3.0800 36 1 7.5646 4.7007 -4.3851 37 1 7.1720 7.1445 -4.5399 38 1 8.3512 7.4164 -3.2346 39 1 10.1243 6.3744 -4.6207 40 1 8.9444 6.1028 -5.9254 41 1 11.3418 9.7662 -7.6413 42 1 3.2296 3.5634 0.6562 43 1 4.3802 2.5761 1.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188652820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:48 Heat of formation + Delta-G solvation = -91.545924 kcal Electronic energy + Delta-G solvation = -19746.305770 eV Core-core repulsion = 16598.320883 eV Total energy + Delta-G solvation = -3147.984887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21175 -39.03887 -36.75765 -35.44838 -33.30866 -31.78476 -31.37765 -29.92103 -27.03800 -25.94232 -23.78579 -23.10762 -22.32367 -20.73213 -19.91233 -19.63452 -17.32877 -16.90898 -16.62756 -15.98328 -15.81355 -15.60502 -15.38576 -14.59286 -14.31345 -14.06827 -13.49414 -13.30432 -13.07069 -12.72767 -12.65680 -12.56560 -12.44639 -11.96213 -11.88733 -11.60997 -11.53235 -11.08553 -11.06757 -10.91088 -10.89534 -10.54462 -10.18821 -9.96354 -9.77730 -9.68116 -9.49199 -9.23206 -8.83596 -8.56171 -6.06935 -4.05640 2.77120 3.28458 3.30798 3.38284 3.42622 3.46964 4.27316 4.34278 4.43836 4.54854 4.55984 4.72183 4.81623 4.92905 4.94323 5.01140 5.27092 5.27797 5.32803 5.40992 5.47609 5.52959 5.54014 5.56969 5.61212 5.66310 5.74498 5.83079 5.96129 6.01911 6.18175 6.37447 6.44636 6.70900 6.79889 6.99098 7.22258 7.35722 7.66255 7.76584 8.37039 8.49861 8.96874 9.55324 11.06269 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047914 B = 0.002341 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.242124 B =11958.990292 C =12066.153976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.061 3.939 5 C -0.147 4.147 6 C -0.092 4.092 7 C -0.130 4.130 8 C 0.507 3.493 9 O -0.546 6.546 10 N -0.729 5.729 11 C 0.114 3.886 12 C -0.113 4.113 13 C -0.012 4.012 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.132 4.132 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.092 0.908 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.770 -16.803 16.660 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.003 3.997 5 C -0.185 4.185 6 C -0.111 4.111 7 C -0.170 4.170 8 C 0.294 3.706 9 O -0.424 6.424 10 N -0.380 5.380 11 C -0.009 4.009 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.169 4.169 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.233 0.767 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.372 -17.292 16.325 29.450 hybrid contribution 0.609 -0.374 -0.427 0.832 sum -16.763 -17.666 15.898 29.083 Atomic orbital electron populations 1.21751 0.93869 1.02181 1.03114 1.22495 0.95539 0.84160 0.99957 1.87944 1.20849 1.26130 1.94645 1.23683 0.80788 0.97925 0.97298 1.23545 0.97819 1.00243 0.96897 1.22064 0.97880 0.94906 0.96232 1.21644 0.98099 0.98688 0.98541 1.20668 0.84271 0.83740 0.81970 1.90680 1.56747 1.31074 1.63852 1.46215 1.37937 1.10019 1.43785 1.21630 0.88846 0.99594 0.90845 1.21703 1.00808 0.92808 0.99810 1.19506 0.93453 0.98100 0.93885 1.21100 1.18742 0.92688 1.23491 0.91006 1.25034 0.96924 0.95539 0.96013 1.69909 1.33263 1.19969 1.31023 0.86772 0.79783 0.83052 0.79677 1.20244 1.21355 1.18919 1.23308 0.97711 0.97816 0.98081 0.91913 0.91826 0.91217 0.93395 0.93526 0.89665 0.91011 0.89374 0.87952 0.88760 0.88686 0.76668 0.91906 0.91918 0.92143 0.92107 0.96331 0.96766 0.92695 0.88991 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.41 6.50 37.16 0.24 0.65 16 3 O -0.38 -3.67 10.36 -35.23 -0.36 -4.04 16 4 C 0.06 0.53 4.30 -25.92 -0.11 0.42 16 5 C -0.15 -1.45 7.47 -25.92 -0.19 -1.64 16 6 C -0.09 -0.87 3.15 -89.81 -0.28 -1.15 16 7 C -0.13 -1.20 5.54 -27.88 -0.15 -1.36 16 8 C 0.51 6.90 7.83 -10.99 -0.09 6.81 16 9 O -0.55 -9.57 15.76 5.55 0.09 -9.48 16 10 N -0.73 -9.75 5.56 -60.29 -0.33 -10.09 16 11 C 0.11 1.89 5.67 -4.04 -0.02 1.86 16 12 C -0.11 -2.11 5.27 -26.73 -0.14 -2.26 16 13 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 18 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 C -0.13 -1.04 7.47 -25.92 -0.19 -1.24 16 23 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.66 7.88 -51.93 -0.41 0.25 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 31 H 0.10 1.10 7.68 -51.93 -0.40 0.70 16 32 H 0.09 0.74 7.84 -51.93 -0.41 0.34 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -33.11 353.14 -8.11 -41.22 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.82 Total: -1.00 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.10 Total: -12.08 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.44 Total: -37.09 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.28 Total: -13.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.11 -8.11 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188652820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.330 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds