Wall clock time and date at job start Mon Mar 30 2020 00:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34231 * 117.00151 * 2 1 4 4 O 1.20830 * 119.99533 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00008 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.46988 * 299.99692 * 5 3 2 7 7 C 1.52993 * 109.47355 * 59.99988 * 5 3 2 8 8 N 1.46906 * 109.46944 * 180.02562 * 5 3 2 9 9 C 1.46898 * 110.99547 * 174.99705 * 8 5 3 10 10 C 1.53008 * 109.47068 * 194.42771 * 9 8 5 11 11 C 1.52990 * 109.47294 * 174.10805 * 10 9 8 12 12 C 1.50703 * 109.47088 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99843 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99752 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00569 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99560 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46886 * 89.99968 * 16 14 12 18 18 H 1.48497 * 109.47105 * 209.99683 * 16 14 12 19 19 H 1.48502 * 109.47280 * 330.00118 * 16 14 12 20 20 C 1.46899 * 110.99945 * 298.94857 * 8 5 3 21 21 C 1.53774 * 113.61452 * 252.72521 * 20 8 5 22 22 C 1.53778 * 87.08407 * 220.01971 * 21 20 8 23 23 C 1.53775 * 113.61344 * 155.22889 * 20 8 5 24 24 H 1.08997 * 109.47115 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46498 * 300.00227 * 1 2 3 26 26 H 1.09002 * 109.46825 * 60.00031 * 1 2 3 27 27 H 1.09006 * 109.46989 * 180.02562 * 7 5 3 28 28 H 1.09001 * 109.46884 * 299.99823 * 7 5 3 29 29 H 1.08998 * 109.47622 * 60.00154 * 7 5 3 30 30 H 1.08998 * 109.47694 * 314.42677 * 9 8 5 31 31 H 1.08996 * 109.47630 * 74.42831 * 9 8 5 32 32 H 1.09001 * 109.46745 * 294.10898 * 10 9 8 33 33 H 1.09002 * 109.46665 * 54.10584 * 10 9 8 34 34 H 1.08993 * 109.47507 * 300.00063 * 11 10 9 35 35 H 1.09004 * 109.47149 * 59.99822 * 11 10 9 36 36 H 0.97004 * 120.00514 * 180.02562 * 15 14 12 37 37 H 1.09005 * 112.84588 * 24.03482 * 20 8 5 38 38 H 1.09001 * 113.61708 * 334.57099 * 21 20 8 39 39 H 1.09003 * 113.61260 * 105.47116 * 21 20 8 40 40 H 1.09001 * 113.61677 * 270.89243 * 22 21 20 41 41 H 1.08995 * 113.61962 * 139.97779 * 22 21 20 42 42 H 1.09005 * 113.61735 * 254.53247 * 23 20 8 43 43 H 1.09000 * 113.61445 * 25.34732 * 23 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9565 0.7805 0.8892 7 6 4.1130 0.5815 -1.2501 8 7 3.9829 2.6836 0.0002 9 6 5.4424 2.8009 0.1192 10 6 5.8108 4.2425 0.4759 11 6 7.3143 4.3333 0.7439 12 6 7.6772 5.7533 1.0946 13 1 6.9118 6.5147 1.1239 14 6 8.9863 6.0803 1.3781 15 7 9.9181 5.1531 1.3430 16 14 9.4361 7.8407 1.8121 17 1 9.3312 8.0305 3.2813 18 1 10.8281 8.1179 1.3755 19 1 8.5067 8.7730 1.1249 20 6 3.4951 3.3774 -1.1993 21 6 4.5997 3.6889 -2.2228 22 6 3.9084 5.0455 -2.4384 23 6 3.3469 4.8968 -1.0145 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 5.2016 0.6382 -1.2502 28 1 3.8039 -0.4637 -1.2502 29 1 3.7230 1.0758 -2.1399 30 1 5.7982 2.1308 0.9018 31 1 5.9072 2.5312 -0.8291 32 1 5.5490 4.9001 -0.3531 33 1 5.2636 4.5471 1.3681 34 1 7.5760 3.6757 1.5728 35 1 7.8614 4.0286 -0.1483 36 1 10.8391 5.3831 1.5428 37 1 2.6158 2.9026 -1.6346 38 1 5.5932 3.7702 -1.7819 39 1 4.5766 3.0427 -3.1003 40 1 3.1426 5.0271 -3.2138 41 1 4.6040 5.8774 -2.5487 42 1 2.3124 5.2260 -0.9165 43 1 3.9968 5.3082 -0.2422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190090819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:23 Heat of formation + Delta-G solvation = -70.326740 kcal Electronic energy + Delta-G solvation = -21829.520164 eV Core-core repulsion = 18682.455409 eV Total energy + Delta-G solvation = -3147.064754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03090 -40.67323 -37.53548 -36.58774 -35.77672 -33.71520 -31.08892 -28.60401 -28.33212 -26.68165 -25.91991 -25.34295 -23.62984 -21.72291 -21.30198 -20.15930 -18.56127 -18.32168 -17.91375 -17.45323 -16.86461 -16.75934 -16.39587 -15.37195 -15.06325 -14.89168 -14.61233 -14.40400 -14.18936 -13.83374 -13.64658 -13.47903 -13.28023 -12.94812 -12.94304 -12.83334 -12.62876 -12.56038 -12.35997 -12.17637 -11.77321 -11.65813 -11.44496 -11.38943 -11.29731 -11.19132 -11.03938 -10.75478 -10.49694 -9.19517 -8.17146 -6.26628 1.18064 1.41000 1.41658 1.52749 1.62315 2.42801 2.90172 3.16303 3.69167 3.75857 3.83230 3.95598 3.99546 4.06338 4.17512 4.26303 4.32618 4.34489 4.44339 4.63559 4.67080 4.72213 4.76004 4.81201 4.83039 4.90648 4.98693 5.04784 5.13711 5.16077 5.18632 5.27475 5.34344 5.38878 5.52525 5.62287 5.81050 5.92368 6.09157 6.14091 6.32672 6.77990 6.89972 7.42011 8.94474 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.004225 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.136496 B = 6625.606645 C = 6936.962871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.518 6.518 5 C 0.086 3.914 6 H 0.131 0.869 7 C -0.173 4.173 8 N -0.524 5.524 9 C 0.066 3.934 10 C -0.099 4.099 11 C 0.029 3.971 12 C -0.539 4.539 13 H 0.055 0.945 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.265 1.265 20 C 0.077 3.923 21 C -0.179 4.179 22 C -0.135 4.135 23 C -0.142 4.142 24 H 0.133 0.867 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.043 0.957 34 H -0.009 1.009 35 H -0.005 1.005 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.697 -11.380 -7.011 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.405 6.405 5 C -0.024 4.024 6 H 0.148 0.852 7 C -0.232 4.232 8 N -0.248 5.248 9 C -0.061 4.061 10 C -0.136 4.136 11 C -0.009 4.009 12 C -0.577 4.577 13 H 0.073 0.927 14 C -0.195 4.195 15 N -0.572 5.572 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.190 1.190 20 C -0.031 4.031 21 C -0.218 4.218 22 C -0.173 4.173 23 C -0.180 4.180 24 H 0.151 0.849 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.010 0.990 35 H 0.014 0.986 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.989 -10.909 -6.561 21.230 hybrid contribution 0.643 0.660 -0.151 0.933 sum -16.346 -10.250 -6.712 20.428 Atomic orbital electron populations 1.23522 0.74874 1.05638 1.02324 1.86488 1.24827 1.32469 1.83883 1.23795 0.92060 0.81375 0.71716 1.90666 1.67378 1.37173 1.45316 1.21440 0.87162 0.90938 1.02831 0.85178 1.22391 1.02689 1.02237 0.95855 1.61955 1.12720 1.10388 1.39690 1.22196 0.85155 0.97976 1.00752 1.21750 0.95955 0.95403 1.00541 1.18958 0.91972 0.95193 0.94784 1.21666 0.93547 0.96017 1.46445 0.92709 1.25890 0.96618 1.01567 0.95457 1.70075 1.01615 1.34971 1.50509 0.85546 0.77514 0.79958 0.78638 1.19977 1.20652 1.18962 1.23094 0.96986 0.94665 0.88354 1.23824 1.00008 0.98231 0.99725 1.22683 1.00099 0.97505 0.96997 1.23290 1.00904 0.96097 0.97727 0.84880 0.92351 0.92079 0.90447 0.89094 0.92075 0.90972 0.92663 0.91427 0.93838 0.99033 0.98640 0.92840 0.88803 0.89198 0.90572 0.88968 0.91770 0.92202 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.36 10.47 -51.43 -0.54 -7.90 16 3 C 0.47 11.82 6.66 71.23 0.47 12.30 16 4 O -0.52 -16.18 14.19 21.95 0.31 -15.87 16 5 C 0.09 2.05 2.84 44.16 0.13 2.18 16 6 H 0.13 2.80 7.99 -2.38 -0.02 2.78 16 7 C -0.17 -3.31 8.43 71.98 0.61 -2.70 16 8 N -0.52 -15.70 4.36 -847.22 -3.69 -19.40 16 9 C 0.07 2.17 3.81 86.31 0.33 2.50 16 10 C -0.10 -4.10 3.43 30.59 0.10 -4.00 16 11 C 0.03 1.49 4.97 29.85 0.15 1.64 16 12 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 13 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 14 C 0.00 0.14 5.46 84.66 0.46 0.60 16 15 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 16 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 C 0.08 2.23 1.90 45.44 0.09 2.32 16 21 C -0.18 -4.94 5.93 31.12 0.18 -4.75 16 22 C -0.13 -3.65 7.88 31.12 0.25 -3.40 16 23 C -0.14 -4.42 7.27 31.12 0.23 -4.19 16 24 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 26 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 27 H 0.08 1.50 6.86 -2.38 -0.02 1.49 16 28 H 0.09 1.39 8.11 -2.39 -0.02 1.37 16 29 H 0.06 1.19 6.58 -2.39 -0.02 1.18 16 30 H 0.07 2.34 7.91 -2.39 -0.02 2.33 16 31 H 0.06 1.74 4.95 -2.39 -0.01 1.73 16 32 H 0.07 2.76 4.11 -2.39 -0.01 2.75 16 33 H 0.04 1.90 8.08 -2.39 -0.02 1.88 16 34 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.09 2.68 5.78 -2.38 -0.01 2.66 16 38 H 0.09 2.90 4.18 -2.39 -0.01 2.89 16 39 H 0.08 1.79 8.00 -2.39 -0.02 1.77 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.08 2.92 5.05 -2.39 -0.01 2.91 16 Total: -1.00 -67.41 330.20 3.81 -63.60 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.99 Total: 15.60 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.42 Total: -26.57 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -3.41 Total: -75.68 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.23 Total: -23.77 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.41 3.81 -63.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190090819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.726 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds