Wall clock time and date at job start Mon Mar 30 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99808 * 2 1 4 4 C 1.50700 * 109.47549 * 293.95674 * 3 2 1 5 5 H 1.07998 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00094 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99509 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 120.00157 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47249 * 59.99763 * 8 6 4 10 10 H 1.48501 * 109.47390 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47083 * 300.00169 * 8 6 4 12 12 C 1.46891 * 111.00364 * 123.95935 * 2 1 3 13 13 C 1.53002 * 109.47117 * 75.73065 * 12 2 1 14 14 C 1.53000 * 109.46708 * 65.27170 * 13 12 2 15 15 C 1.53010 * 109.46104 * 180.17972 * 14 13 12 16 16 C 1.52955 * 109.45346 * 300.20631 * 15 14 13 17 17 C 1.52959 * 109.82538 * 59.64665 * 16 15 14 18 18 C 1.53000 * 109.46533 * 185.29634 * 13 12 2 19 19 O 1.43688 * 109.43237 * 179.80912 * 16 15 14 20 20 C 1.44802 * 104.79706 * 95.47605 * 19 16 15 21 21 C 1.54916 * 101.72423 * 36.06955 * 20 19 16 22 22 O 1.43318 * 109.62282 * 299.12374 * 16 15 14 23 23 H 1.09003 * 109.46924 * 299.84232 * 1 2 3 24 24 H 1.09001 * 109.47242 * 59.83778 * 1 2 3 25 25 H 1.08996 * 109.47153 * 179.84444 * 1 2 3 26 26 H 1.09004 * 109.46537 * 53.96084 * 3 2 1 27 27 H 1.09005 * 109.46892 * 173.95242 * 3 2 1 28 28 H 0.97006 * 119.99522 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47023 * 315.73141 * 12 2 1 30 30 H 1.09002 * 109.47555 * 195.72933 * 12 2 1 31 31 H 1.09001 * 109.46407 * 305.28349 * 13 12 2 32 32 H 1.08999 * 109.46964 * 300.18167 * 14 13 12 33 33 H 1.09004 * 109.47402 * 60.18100 * 14 13 12 34 34 H 1.09010 * 109.47323 * 60.19747 * 15 14 13 35 35 H 1.08996 * 109.47614 * 180.21037 * 15 14 13 36 36 H 1.09001 * 109.47037 * 180.37967 * 17 16 15 37 37 H 1.08993 * 109.47119 * 60.36507 * 17 16 15 38 38 H 1.08997 * 109.46973 * 299.83124 * 18 13 12 39 39 H 1.08996 * 109.46873 * 59.83380 * 18 13 12 40 40 H 1.08999 * 110.97693 * 277.95955 * 20 19 16 41 41 H 1.09001 * 111.00906 * 154.19305 * 20 19 16 42 42 H 1.09001 * 110.69783 * 206.07898 * 21 20 19 43 43 H 1.09006 * 110.69587 * 82.87508 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 -1.2984 5 1 1.0739 1.5117 -2.0484 6 6 2.0267 3.3497 -1.5283 7 7 2.7119 4.0020 -0.6147 8 14 1.5817 4.1876 -3.1373 9 1 0.1044 4.2239 -3.2845 10 1 2.1139 5.5739 -3.1373 11 1 2.1733 3.4307 -4.2697 12 6 1.9955 -0.7660 1.1374 13 6 1.8464 -2.2627 0.8571 14 6 2.7319 -2.6501 -0.3289 15 6 2.5793 -4.1460 -0.6120 16 6 2.9974 -4.9436 0.6243 17 6 2.1186 -4.5546 1.8143 18 6 2.2718 -3.0578 2.0931 19 8 2.8496 -6.3482 0.3596 20 6 4.1647 -6.7859 -0.0595 21 6 5.0850 -5.9214 0.8381 22 8 4.3709 -4.6720 0.9305 23 1 -0.3633 0.5114 0.8914 24 1 -0.3634 0.5163 -0.8885 25 1 -0.3633 -1.0276 -0.0028 26 1 1.5611 1.9273 0.8310 27 1 3.0797 1.3445 0.1083 28 1 2.9865 4.9181 -0.7766 29 1 1.4387 -0.5078 2.0383 30 1 3.0492 -0.5264 1.2804 31 1 0.8058 -2.4863 0.6218 32 1 2.4305 -2.0811 -1.2084 33 1 3.7729 -2.4293 -0.0926 34 1 1.5389 -4.3662 -0.8518 35 1 3.2129 -4.4229 -1.4545 36 1 2.4258 -5.1212 2.6934 37 1 1.0766 -4.7767 1.5845 38 1 3.3131 -2.8364 2.3269 39 1 1.6425 -2.7795 2.9384 40 1 4.3311 -6.5671 -1.1142 41 1 4.3065 -7.8473 0.1439 42 1 6.0568 -5.7756 0.3663 43 1 5.1981 -6.3743 1.8232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190271024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:49 Heat of formation + Delta-G solvation = -101.235833 kcal Electronic energy + Delta-G solvation = -21692.605720 eV Core-core repulsion = 18544.200647 eV Total energy + Delta-G solvation = -3148.405073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89970 -37.88223 -35.63203 -35.04078 -32.55210 -30.93100 -30.73679 -28.62762 -27.04600 -25.69931 -23.62150 -23.42755 -22.58095 -21.18982 -19.91085 -19.34006 -17.23170 -16.81057 -16.28240 -15.68615 -15.25046 -14.70716 -14.45841 -14.21394 -14.03654 -13.84494 -13.49196 -13.06820 -12.96550 -12.69559 -12.50669 -12.12326 -11.99333 -11.84756 -11.61239 -11.34570 -11.04136 -10.90946 -10.83912 -10.69515 -10.56348 -10.41812 -10.27217 -10.21418 -9.95710 -9.70367 -9.32159 -9.11152 -8.38941 -7.13653 -5.98177 -3.99218 3.28193 3.36085 3.39889 3.42972 3.85190 4.38550 4.45841 4.64059 4.71036 4.77637 4.96719 4.98383 5.12011 5.25449 5.34727 5.36961 5.42322 5.48415 5.56593 5.61387 5.74030 5.78145 5.85214 5.98314 6.06138 6.12751 6.23183 6.29016 6.34404 6.39315 6.43260 6.55573 6.78244 6.83925 6.88953 7.06242 7.36756 7.42176 7.85634 8.15946 8.28427 8.62770 9.08496 9.64696 11.12756 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.003845 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.293633 B = 7281.295846 C = 7503.868967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.538 5.538 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.060 3.940 13 C -0.080 4.080 14 C -0.098 4.098 15 C -0.134 4.134 16 C 0.258 3.742 17 C -0.114 4.114 18 C -0.109 4.109 19 O -0.377 6.377 20 C 0.015 3.985 21 C 0.019 3.981 22 O -0.368 6.368 23 H 0.009 0.991 24 H 0.071 0.929 25 H 0.044 0.956 26 H -0.011 1.011 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.944 -20.759 3.930 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.262 5.262 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.069 4.069 13 C -0.099 4.099 14 C -0.136 4.136 15 C -0.172 4.172 16 C 0.182 3.818 17 C -0.152 4.152 18 C -0.147 4.147 19 O -0.297 6.297 20 C -0.061 4.061 21 C -0.058 4.058 22 O -0.289 6.289 23 H 0.028 0.972 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.006 0.994 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.071 -20.707 3.606 21.120 hybrid contribution -0.307 0.806 -0.151 0.876 sum 1.764 -19.901 3.455 20.275 Atomic orbital electron populations 1.22219 0.89224 0.98987 1.00580 1.62040 1.06629 1.17544 1.40027 1.19739 0.95288 0.81784 0.96421 1.21144 1.34662 0.96866 1.01754 0.91959 1.24990 0.95381 0.97375 0.96924 1.69958 1.38469 1.11457 1.34091 0.86572 0.78653 0.78331 0.83899 1.20331 1.21407 1.20193 1.22072 0.99972 0.92614 0.92227 1.21161 0.99569 0.94818 0.94377 1.21367 1.00216 0.92476 0.99519 1.22148 1.01964 0.97149 0.95924 1.23453 0.82963 0.80448 0.94969 1.21762 0.99452 0.97597 0.96425 1.21504 1.02396 0.92655 0.98163 1.89237 1.29708 1.23642 1.87147 1.24337 0.82023 1.00551 0.99218 1.24159 0.96944 0.84735 0.99962 1.88956 1.19443 1.29193 1.91300 0.97233 0.91063 0.93742 0.99355 0.95303 0.92943 0.96025 0.91573 0.91550 0.89710 0.91676 0.90557 0.91789 0.91419 0.90486 0.91090 0.91799 0.90721 0.87740 0.88465 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.18 60.06 0.55 1.32 16 2 N -0.54 -11.72 4.14 -244.36 -1.01 -12.73 16 3 C 0.19 5.12 4.70 -4.97 -0.02 5.10 16 4 C -0.51 -14.39 8.51 -34.44 -0.29 -14.68 16 5 H 0.06 1.75 7.10 -52.49 -0.37 1.37 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.06 1.10 4.39 -3.83 -0.02 1.09 16 13 C -0.08 -1.21 2.24 -90.62 -0.20 -1.42 16 14 C -0.10 -1.51 4.96 -26.73 -0.13 -1.65 16 15 C -0.13 -1.78 5.28 -26.75 -0.14 -1.92 16 16 C 0.26 3.28 1.02 -26.77 -0.03 3.26 16 17 C -0.11 -1.39 5.33 -26.74 -0.14 -1.54 16 18 C -0.11 -1.43 5.07 -26.72 -0.14 -1.56 16 19 O -0.38 -4.59 10.99 -59.04 -0.65 -5.24 16 20 C 0.02 0.13 7.91 38.17 0.30 0.43 16 21 C 0.02 0.17 8.07 38.17 0.31 0.48 16 22 O -0.37 -4.78 9.62 -59.04 -0.57 -5.35 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 1.50 6.85 -51.93 -0.36 1.15 16 25 H 0.04 0.75 6.69 -51.93 -0.35 0.40 16 26 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 27 H 0.03 0.82 7.83 -51.93 -0.41 0.41 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.02 0.39 8.00 -51.92 -0.42 -0.02 16 30 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 31 H 0.07 1.00 6.72 -51.93 -0.35 0.65 16 32 H 0.08 1.48 7.76 -51.93 -0.40 1.07 16 33 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 34 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.99 7.72 -51.93 -0.40 0.59 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -31.08 332.98 -9.18 -40.26 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.64 Total: -2.79 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.05 Total: -9.64 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.28 Total: -39.13 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.22 Total: -10.59 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.08 -9.18 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190271024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.974 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds