Wall clock time and date at job start Mon Mar 30 2020 01:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99808 * 2 1 4 4 C 1.50700 * 109.47549 * 293.95674 * 3 2 1 5 5 H 1.07998 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00094 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99509 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 120.00157 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47249 * 59.99763 * 8 6 4 10 10 H 1.48501 * 109.47390 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47083 * 300.00169 * 8 6 4 12 12 C 1.46891 * 111.00364 * 123.95935 * 2 1 3 13 13 C 1.53002 * 109.47117 * 75.73065 * 12 2 1 14 14 C 1.53000 * 109.46708 * 65.27170 * 13 12 2 15 15 C 1.53010 * 109.46104 * 180.17972 * 14 13 12 16 16 C 1.52955 * 109.45346 * 300.20631 * 15 14 13 17 17 C 1.52959 * 109.82538 * 59.64665 * 16 15 14 18 18 C 1.53000 * 109.46533 * 185.29634 * 13 12 2 19 19 O 1.43688 * 109.43237 * 179.80912 * 16 15 14 20 20 C 1.44802 * 104.79706 * 95.47605 * 19 16 15 21 21 C 1.54916 * 101.72423 * 36.06955 * 20 19 16 22 22 O 1.43318 * 109.62282 * 299.12374 * 16 15 14 23 23 H 1.09003 * 109.46924 * 299.84232 * 1 2 3 24 24 H 1.09001 * 109.47242 * 59.83778 * 1 2 3 25 25 H 1.08996 * 109.47153 * 179.84444 * 1 2 3 26 26 H 1.09004 * 109.46537 * 53.96084 * 3 2 1 27 27 H 1.09005 * 109.46892 * 173.95242 * 3 2 1 28 28 H 0.97006 * 119.99522 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47023 * 315.73141 * 12 2 1 30 30 H 1.09002 * 109.47555 * 195.72933 * 12 2 1 31 31 H 1.09001 * 109.46407 * 305.28349 * 13 12 2 32 32 H 1.08999 * 109.46964 * 300.18167 * 14 13 12 33 33 H 1.09004 * 109.47402 * 60.18100 * 14 13 12 34 34 H 1.09010 * 109.47323 * 60.19747 * 15 14 13 35 35 H 1.08996 * 109.47614 * 180.21037 * 15 14 13 36 36 H 1.09001 * 109.47037 * 180.37967 * 17 16 15 37 37 H 1.08993 * 109.47119 * 60.36507 * 17 16 15 38 38 H 1.08997 * 109.46973 * 299.83124 * 18 13 12 39 39 H 1.08996 * 109.46873 * 59.83380 * 18 13 12 40 40 H 1.08999 * 110.97693 * 277.95955 * 20 19 16 41 41 H 1.09001 * 111.00906 * 154.19305 * 20 19 16 42 42 H 1.09001 * 110.69783 * 206.07898 * 21 20 19 43 43 H 1.09006 * 110.69587 * 82.87508 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 -1.2984 5 1 1.0739 1.5117 -2.0484 6 6 2.0267 3.3497 -1.5283 7 7 2.7119 4.0020 -0.6147 8 14 1.5817 4.1876 -3.1373 9 1 0.1044 4.2239 -3.2845 10 1 2.1139 5.5739 -3.1373 11 1 2.1733 3.4307 -4.2697 12 6 1.9955 -0.7660 1.1374 13 6 1.8464 -2.2627 0.8571 14 6 2.7319 -2.6501 -0.3289 15 6 2.5793 -4.1460 -0.6120 16 6 2.9974 -4.9436 0.6243 17 6 2.1186 -4.5546 1.8143 18 6 2.2718 -3.0578 2.0931 19 8 2.8496 -6.3482 0.3596 20 6 4.1647 -6.7859 -0.0595 21 6 5.0850 -5.9214 0.8381 22 8 4.3709 -4.6720 0.9305 23 1 -0.3633 0.5114 0.8914 24 1 -0.3634 0.5163 -0.8885 25 1 -0.3633 -1.0276 -0.0028 26 1 1.5611 1.9273 0.8310 27 1 3.0797 1.3445 0.1083 28 1 2.9865 4.9181 -0.7766 29 1 1.4387 -0.5078 2.0383 30 1 3.0492 -0.5264 1.2804 31 1 0.8058 -2.4863 0.6218 32 1 2.4305 -2.0811 -1.2084 33 1 3.7729 -2.4293 -0.0926 34 1 1.5389 -4.3662 -0.8518 35 1 3.2129 -4.4229 -1.4545 36 1 2.4258 -5.1212 2.6934 37 1 1.0766 -4.7767 1.5845 38 1 3.3131 -2.8364 2.3269 39 1 1.6425 -2.7795 2.9384 40 1 4.3311 -6.5671 -1.1142 41 1 4.3065 -7.8473 0.1439 42 1 6.0568 -5.7756 0.3663 43 1 5.1981 -6.3743 1.8232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190271024.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:48 Heat of formation + Delta-G solvation = -121.048664 kcal Electronic energy + Delta-G solvation = -21693.464869 eV Core-core repulsion = 18544.200647 eV Total energy + Delta-G solvation = -3149.264222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79933 -39.24460 -37.13731 -35.92930 -34.64622 -32.11168 -31.82221 -29.75281 -28.92532 -27.24781 -25.23954 -24.30073 -23.65367 -22.67741 -21.40186 -20.51422 -18.48142 -18.05760 -17.70817 -16.78519 -16.56273 -16.16506 -16.04206 -15.74788 -15.30899 -14.83314 -14.70512 -14.47961 -14.13675 -13.91124 -13.68289 -13.60925 -13.29614 -13.15990 -13.00588 -12.81942 -12.57607 -12.49090 -12.36579 -12.16047 -12.09703 -12.00039 -11.59844 -11.51699 -11.20775 -11.06237 -11.04600 -10.60448 -10.30947 -8.95411 -8.19270 -6.29636 1.41208 1.44869 1.52683 2.41135 2.49356 2.99261 3.12936 3.33832 3.67618 3.76153 3.78009 3.89626 4.07916 4.19456 4.28722 4.31317 4.47534 4.50146 4.54292 4.55582 4.59462 4.65352 4.72581 4.78971 4.85903 4.88997 4.98819 5.02392 5.05634 5.11212 5.12755 5.20277 5.24838 5.32401 5.34999 5.54351 5.61915 5.67272 6.06962 6.21059 6.37038 6.67908 6.87078 7.40153 8.91821 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.003845 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.293633 B = 7281.295846 C = 7503.868967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.061 3.939 13 C -0.070 4.070 14 C -0.092 4.092 15 C -0.129 4.129 16 C 0.258 3.742 17 C -0.112 4.112 18 C -0.102 4.102 19 O -0.389 6.389 20 C 0.012 3.988 21 C 0.011 3.989 22 O -0.393 6.393 23 H 0.007 0.993 24 H 0.056 0.944 25 H 0.080 0.920 26 H -0.041 1.041 27 H -0.001 1.001 28 H 0.264 0.736 29 H 0.027 0.973 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -22.588 3.360 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.067 4.067 13 C -0.089 4.089 14 C -0.129 4.129 15 C -0.167 4.167 16 C 0.181 3.819 17 C -0.149 4.149 18 C -0.140 4.140 19 O -0.310 6.310 20 C -0.064 4.064 21 C -0.064 4.064 22 O -0.315 6.315 23 H 0.025 0.975 24 H 0.075 0.925 25 H 0.098 0.902 26 H -0.024 1.024 27 H 0.017 0.983 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.151 0.849 42 H 0.131 0.869 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.376 -22.570 3.040 22.816 hybrid contribution -0.027 1.317 0.063 1.318 sum 1.349 -21.254 3.103 21.521 Atomic orbital electron populations 1.22227 0.87698 1.01013 0.99711 1.61979 1.08006 1.14765 1.41897 1.19393 0.93389 0.84171 0.94908 1.21458 1.34820 0.97489 1.02363 0.91765 1.25943 0.95015 0.98078 1.00755 1.70095 1.39426 1.11893 1.36309 0.85421 0.78871 0.77122 0.79109 1.19116 1.20863 1.19322 1.22145 0.98820 0.94439 0.91337 1.21075 1.00018 0.92354 0.95405 1.21226 0.99132 0.94037 0.98547 1.22082 1.02478 0.95396 0.96744 1.23359 0.83151 0.80847 0.94527 1.21739 0.99947 0.96490 0.96756 1.21415 1.01923 0.93298 0.97333 1.89214 1.31494 1.22991 1.87352 1.24587 0.80392 1.02038 0.99376 1.24425 0.97405 0.83568 1.01041 1.88937 1.19828 1.31304 1.91400 0.97472 0.92546 0.90156 1.02351 0.98254 0.92721 0.95464 0.93245 0.90659 0.92126 0.93357 0.89929 0.91555 0.90384 0.89599 0.92184 0.90445 0.90266 0.84909 0.86862 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.18 127.69 1.17 2.81 16 2 N -0.54 -24.06 4.14 -927.03 -3.84 -27.90 16 3 C 0.21 11.50 4.70 85.56 0.40 11.90 16 4 C -0.52 -30.36 8.51 25.60 0.22 -30.14 16 5 H 0.06 3.63 7.10 -2.91 -0.02 3.61 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 7 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 8 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.06 2.27 4.39 86.31 0.38 2.65 16 13 C -0.07 -2.05 2.24 -10.79 -0.02 -2.08 16 14 C -0.09 -2.83 4.96 30.60 0.15 -2.68 16 15 C -0.13 -3.29 5.28 30.58 0.16 -3.13 16 16 C 0.26 6.12 1.02 30.57 0.03 6.15 16 17 C -0.11 -2.47 5.33 30.59 0.16 -2.31 16 18 C -0.10 -2.52 5.07 30.60 0.16 -2.37 16 19 O -0.39 -8.58 10.99 -126.22 -1.39 -9.97 16 20 C 0.01 0.18 7.91 72.64 0.57 0.75 16 21 C 0.01 0.18 8.07 72.64 0.59 0.77 16 22 O -0.39 -9.74 9.62 -126.22 -1.21 -10.95 16 23 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 24 H 0.06 2.36 6.85 -2.39 -0.02 2.35 16 25 H 0.08 2.56 6.69 -2.39 -0.02 2.54 16 26 H -0.04 -2.47 8.12 -2.38 -0.02 -2.49 16 27 H 0.00 -0.04 7.83 -2.38 -0.02 -0.06 16 28 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 29 H 0.03 0.98 8.00 -2.38 -0.02 0.96 16 30 H 0.05 1.98 7.74 -2.39 -0.02 1.96 16 31 H 0.08 2.11 6.72 -2.39 -0.02 2.09 16 32 H 0.06 2.14 7.76 -2.39 -0.02 2.12 16 33 H 0.05 1.63 7.72 -2.38 -0.02 1.61 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.63 7.72 -2.39 -0.02 1.61 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.13 1.18 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -67.77 332.98 1.26 -66.52 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.96 Total: 9.92 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.43 Total: -17.22 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -3.56 Total: -85.30 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -2.60 Total: -20.92 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.77 1.26 -66.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190271024.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.531 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds