Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47051 * 2 1 4 4 C 1.34223 * 117.00031 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00106 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00071 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.47207 * 59.99976 * 6 4 3 8 8 C 1.52997 * 109.47297 * 300.00137 * 6 4 3 9 9 N 1.46904 * 109.47147 * 179.97438 * 6 4 3 10 10 C 1.46901 * 110.99804 * 180.02562 * 9 6 4 11 11 C 1.53004 * 109.46958 * 200.97392 * 10 9 6 12 12 C 1.52998 * 109.47073 * 179.11943 * 11 10 9 13 13 C 1.50709 * 109.46935 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00100 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99493 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00744 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99499 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47407 * 89.99490 * 17 15 13 19 19 H 1.48503 * 109.46802 * 209.99609 * 17 15 13 20 20 H 1.48498 * 109.47434 * 329.99456 * 17 15 13 21 21 C 1.46896 * 111.00260 * 303.95202 * 9 6 4 22 22 C 1.52997 * 117.50307 * 233.08947 * 21 9 6 23 23 C 1.53000 * 60.00267 * 252.51125 * 22 21 9 24 24 H 1.09001 * 109.47230 * 299.99741 * 1 2 3 25 25 H 1.08999 * 109.47438 * 59.99941 * 1 2 3 26 26 H 1.09007 * 109.46900 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46994 * 239.99817 * 2 1 3 28 28 H 1.09000 * 109.46743 * 120.00319 * 2 1 3 29 29 H 1.09001 * 109.47667 * 180.02562 * 8 6 4 30 30 H 1.09004 * 109.46860 * 300.00050 * 8 6 4 31 31 H 1.09001 * 109.46999 * 59.99567 * 8 6 4 32 32 H 1.08995 * 109.47534 * 80.97604 * 10 9 6 33 33 H 1.09000 * 109.47218 * 320.96862 * 10 9 6 34 34 H 1.08997 * 109.46890 * 299.12050 * 11 10 9 35 35 H 1.09003 * 109.47345 * 59.11645 * 11 10 9 36 36 H 1.09005 * 109.47212 * 299.99560 * 12 11 10 37 37 H 1.08991 * 109.47605 * 59.99840 * 12 11 10 38 38 H 0.97000 * 120.00483 * 180.02562 * 16 15 13 39 39 H 1.08998 * 115.54521 * 18.80121 * 21 9 6 40 40 H 1.09002 * 117.49719 * 0.02562 * 22 21 9 41 41 H 1.08997 * 117.49911 * 145.01747 * 22 21 9 42 42 H 1.08993 * 117.49749 * 252.51371 * 23 22 21 43 43 H 1.08995 * 117.49692 * 107.48541 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0012 7 1 3.5844 3.4693 0.8912 8 6 3.4495 3.6847 -1.2480 9 7 5.3877 2.8605 0.0023 10 6 5.9851 4.2025 0.0035 11 6 7.4235 4.1209 -0.5117 12 6 8.0385 5.5217 -0.5312 13 6 9.4550 5.4414 -1.0393 14 1 9.8748 4.4866 -1.3198 15 6 10.2154 6.5866 -1.1449 16 7 9.7045 7.7492 -0.8029 17 14 11.9715 6.4870 -1.7741 18 1 11.9780 6.6442 -3.2507 19 1 12.7803 7.5690 -1.1574 20 1 12.5522 5.1685 -1.4142 21 6 5.8725 2.0680 1.1401 22 6 6.9208 2.7087 2.0519 23 6 7.3231 1.5833 1.0965 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8665 4.6918 -1.2478 30 1 3.7858 3.1528 -2.1380 31 1 2.3610 3.7417 -1.2484 32 1 5.9848 4.5995 1.0186 33 1 5.4041 4.8595 -0.6437 34 1 8.0083 3.4764 0.1444 35 1 7.4251 3.7093 -1.5210 36 1 7.4535 6.1663 -1.1874 37 1 8.0369 5.9333 0.4780 38 1 10.2394 8.5549 -0.8776 39 1 5.1361 1.4112 1.6032 40 1 7.2505 3.7185 1.8076 41 1 6.8742 2.4737 3.1152 42 1 7.5410 0.6079 1.5314 43 1 7.9176 1.8526 0.2236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190845776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = -50.891970 kcal Electronic energy + Delta-G solvation = -21258.022409 eV Core-core repulsion = 18111.800409 eV Total energy + Delta-G solvation = -3146.222000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79748 -38.92793 -36.60522 -34.72682 -33.78049 -32.05537 -31.54650 -29.43936 -26.83282 -24.89828 -23.28548 -22.57544 -21.99282 -21.01387 -20.11874 -19.69261 -17.69033 -16.89842 -16.71434 -16.21558 -16.02007 -15.11814 -14.55694 -14.35604 -14.00924 -13.71777 -13.40340 -13.06835 -12.69687 -12.58856 -12.34886 -12.18348 -11.93613 -11.89585 -11.76446 -11.66419 -11.34052 -10.93007 -10.82564 -10.68860 -10.52023 -10.44642 -10.30443 -10.20305 -9.92388 -9.45768 -9.19589 -9.03515 -8.30859 -7.92021 -5.96932 -3.98445 2.17734 2.44897 3.34734 3.40779 3.44835 3.82604 4.28031 4.49282 4.53420 4.65108 4.73255 4.92928 4.99607 5.01725 5.24179 5.27550 5.38228 5.39185 5.40602 5.47962 5.49995 5.64535 5.68345 5.76473 5.87962 5.98606 6.08927 6.14172 6.30847 6.34193 6.38307 6.55565 6.74861 6.82317 7.18069 7.27276 7.33815 7.72027 7.75828 7.86044 8.03794 8.47493 9.08672 9.65529 11.14515 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.003632 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.059395 B = 7708.340374 C = 8082.352736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.361 6.361 4 C 0.464 3.536 5 O -0.485 6.485 6 C 0.094 3.906 7 H 0.076 0.924 8 C -0.145 4.145 9 N -0.492 5.492 10 C 0.045 3.955 11 C -0.117 4.117 12 C 0.023 3.977 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.024 3.976 22 C -0.222 4.222 23 C -0.165 4.165 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 -12.342 3.625 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.305 3.695 5 O -0.370 6.370 6 C -0.016 4.016 7 H 0.094 0.906 8 C -0.202 4.202 9 N -0.216 5.216 10 C -0.080 4.080 11 C -0.155 4.155 12 C -0.014 4.014 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.085 4.085 22 C -0.261 4.261 23 C -0.203 4.203 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.475 -12.720 3.189 21.848 hybrid contribution 0.813 0.197 0.416 0.935 sum -16.662 -12.523 3.605 21.152 Atomic orbital electron populations 1.21801 0.92687 1.02870 1.03524 1.22990 0.95251 0.80430 1.02554 1.86495 1.24748 1.32196 1.84363 1.23658 0.80357 0.92758 0.72701 1.90685 1.59960 1.42743 1.43608 1.21188 0.90012 0.89229 1.01158 0.90596 1.21898 1.01335 1.01067 0.95930 1.61867 1.02242 1.16317 1.41142 1.22642 0.98189 0.86740 1.00464 1.22003 0.91648 1.01188 1.00659 1.19066 0.95206 0.90228 0.96933 1.21241 0.97902 0.93336 1.42935 0.92683 1.25013 0.98312 0.95521 0.95628 1.69960 1.36890 0.98158 1.48668 0.86617 0.84874 0.77684 0.78974 1.20704 1.21300 1.19867 1.22554 0.92700 1.00242 0.93021 1.23749 1.05625 1.00275 0.96444 1.23194 0.97425 0.97617 1.02075 0.91524 0.91425 0.90339 0.91224 0.91421 0.90118 0.91073 0.90997 0.93780 0.90481 0.91594 0.92637 0.96760 0.96850 0.93085 0.87385 0.86520 0.89593 0.89489 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.16 10.12 -39.24 -0.40 -4.56 16 4 C 0.46 6.31 6.66 36.00 0.24 6.55 16 5 O -0.48 -7.85 13.86 -18.75 -0.26 -8.11 16 6 C 0.09 1.23 2.58 -68.87 -0.18 1.06 16 7 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 8 C -0.14 -1.67 8.97 37.16 0.33 -1.33 16 9 N -0.49 -7.79 4.35 -220.10 -0.96 -8.75 16 10 C 0.05 0.78 4.41 -3.82 -0.02 0.76 16 11 C -0.12 -2.43 4.20 -26.73 -0.11 -2.55 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.02 0.37 4.85 -67.71 -0.33 0.04 16 22 C -0.22 -3.44 8.90 -26.73 -0.24 -3.68 16 23 C -0.17 -2.65 9.62 -26.73 -0.26 -2.90 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 28 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.08 0.93 6.03 -51.93 -0.31 0.62 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.04 0.75 6.27 -51.93 -0.33 0.42 16 33 H 0.08 1.25 5.52 -51.93 -0.29 0.97 16 34 H 0.07 1.36 3.82 -51.93 -0.20 1.16 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.11 1.66 6.08 -51.93 -0.32 1.35 16 40 H 0.12 2.03 4.77 -51.93 -0.25 1.78 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.11 1.95 5.97 -51.93 -0.31 1.64 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -31.58 339.01 -8.32 -39.90 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.03 Total: 0.64 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.49 Total: -14.83 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.22 Total: -35.02 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.66 Total: -12.67 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.58 -8.32 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190845776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.995 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds