Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47051 * 2 1 4 4 C 1.34223 * 117.00031 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00106 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00071 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.47207 * 59.99976 * 6 4 3 8 8 C 1.52997 * 109.47297 * 300.00137 * 6 4 3 9 9 N 1.46904 * 109.47147 * 179.97438 * 6 4 3 10 10 C 1.46901 * 110.99804 * 180.02562 * 9 6 4 11 11 C 1.53004 * 109.46958 * 200.97392 * 10 9 6 12 12 C 1.52998 * 109.47073 * 179.11943 * 11 10 9 13 13 C 1.50709 * 109.46935 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00100 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99493 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00744 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99499 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47407 * 89.99490 * 17 15 13 19 19 H 1.48503 * 109.46802 * 209.99609 * 17 15 13 20 20 H 1.48498 * 109.47434 * 329.99456 * 17 15 13 21 21 C 1.46896 * 111.00260 * 303.95202 * 9 6 4 22 22 C 1.52997 * 117.50307 * 233.08947 * 21 9 6 23 23 C 1.53000 * 60.00267 * 252.51125 * 22 21 9 24 24 H 1.09001 * 109.47230 * 299.99741 * 1 2 3 25 25 H 1.08999 * 109.47438 * 59.99941 * 1 2 3 26 26 H 1.09007 * 109.46900 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46994 * 239.99817 * 2 1 3 28 28 H 1.09000 * 109.46743 * 120.00319 * 2 1 3 29 29 H 1.09001 * 109.47667 * 180.02562 * 8 6 4 30 30 H 1.09004 * 109.46860 * 300.00050 * 8 6 4 31 31 H 1.09001 * 109.46999 * 59.99567 * 8 6 4 32 32 H 1.08995 * 109.47534 * 80.97604 * 10 9 6 33 33 H 1.09000 * 109.47218 * 320.96862 * 10 9 6 34 34 H 1.08997 * 109.46890 * 299.12050 * 11 10 9 35 35 H 1.09003 * 109.47345 * 59.11645 * 11 10 9 36 36 H 1.09005 * 109.47212 * 299.99560 * 12 11 10 37 37 H 1.08991 * 109.47605 * 59.99840 * 12 11 10 38 38 H 0.97000 * 120.00483 * 180.02562 * 16 15 13 39 39 H 1.08998 * 115.54521 * 18.80121 * 21 9 6 40 40 H 1.09002 * 117.49719 * 0.02562 * 22 21 9 41 41 H 1.08997 * 117.49911 * 145.01747 * 22 21 9 42 42 H 1.08993 * 117.49749 * 252.51371 * 23 22 21 43 43 H 1.08995 * 117.49692 * 107.48541 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0012 7 1 3.5844 3.4693 0.8912 8 6 3.4495 3.6847 -1.2480 9 7 5.3877 2.8605 0.0023 10 6 5.9851 4.2025 0.0035 11 6 7.4235 4.1209 -0.5117 12 6 8.0385 5.5217 -0.5312 13 6 9.4550 5.4414 -1.0393 14 1 9.8748 4.4866 -1.3198 15 6 10.2154 6.5866 -1.1449 16 7 9.7045 7.7492 -0.8029 17 14 11.9715 6.4870 -1.7741 18 1 11.9780 6.6442 -3.2507 19 1 12.7803 7.5690 -1.1574 20 1 12.5522 5.1685 -1.4142 21 6 5.8725 2.0680 1.1401 22 6 6.9208 2.7087 2.0519 23 6 7.3231 1.5833 1.0965 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8665 4.6918 -1.2478 30 1 3.7858 3.1528 -2.1380 31 1 2.3610 3.7417 -1.2484 32 1 5.9848 4.5995 1.0186 33 1 5.4041 4.8595 -0.6437 34 1 8.0083 3.4764 0.1444 35 1 7.4251 3.7093 -1.5210 36 1 7.4535 6.1663 -1.1874 37 1 8.0369 5.9333 0.4780 38 1 10.2394 8.5549 -0.8776 39 1 5.1361 1.4112 1.6032 40 1 7.2505 3.7185 1.8076 41 1 6.8742 2.4737 3.1152 42 1 7.5410 0.6079 1.5314 43 1 7.9176 1.8526 0.2236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190845776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = -69.199523 kcal Electronic energy + Delta-G solvation = -21258.816284 eV Core-core repulsion = 18111.800409 eV Total energy + Delta-G solvation = -3147.015875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86078 -40.13816 -37.63368 -35.90231 -35.73268 -33.58723 -32.58945 -30.71795 -28.51287 -26.16168 -24.68357 -23.55669 -23.35143 -22.23235 -21.66412 -20.95810 -18.74207 -18.36713 -18.13430 -17.69650 -17.04135 -16.58498 -16.22934 -15.53506 -15.04114 -14.91452 -14.67103 -14.42598 -13.95645 -13.67926 -13.61223 -13.54417 -13.35609 -12.94105 -12.89361 -12.80291 -12.61129 -12.46086 -12.41897 -12.22361 -12.06169 -11.67835 -11.52541 -11.44646 -11.35834 -11.29190 -11.09225 -10.80008 -10.50733 -9.16020 -8.18339 -6.28052 1.13136 1.40296 1.41133 1.50555 1.52690 2.41746 2.63966 3.05119 3.14955 3.61872 3.87177 3.98115 4.00768 4.02472 4.05348 4.09760 4.14713 4.24411 4.35654 4.41283 4.60567 4.71972 4.76707 4.82197 4.85757 4.90773 4.93877 4.94466 5.05591 5.11966 5.14672 5.26944 5.28387 5.36227 5.43988 5.57258 5.77735 5.90333 5.97631 6.05055 6.30646 6.74226 6.88221 7.40627 8.93332 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.003632 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.059395 B = 7708.340374 C = 8082.352736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.469 3.531 5 O -0.516 6.516 6 C 0.090 3.910 7 H 0.096 0.904 8 C -0.141 4.141 9 N -0.505 5.505 10 C 0.058 3.942 11 C -0.102 4.102 12 C 0.030 3.970 13 C -0.540 4.540 14 H 0.054 0.946 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.960 3.040 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.266 1.266 21 C 0.028 3.972 22 C -0.216 4.216 23 C -0.175 4.175 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.043 0.957 36 H -0.007 1.007 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.766 -13.168 3.827 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.312 3.688 5 O -0.404 6.404 6 C -0.019 4.019 7 H 0.113 0.887 8 C -0.198 4.198 9 N -0.228 5.228 10 C -0.068 4.068 11 C -0.140 4.140 12 C -0.007 4.007 13 C -0.578 4.578 14 H 0.072 0.928 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.785 3.215 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.081 4.081 22 C -0.255 4.255 23 C -0.213 4.213 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.438 -13.553 3.389 23.133 hybrid contribution 1.029 0.418 0.354 1.166 sum -17.409 -13.134 3.743 22.127 Atomic orbital electron populations 1.21819 0.90220 1.04348 1.03808 1.23288 0.97136 0.79151 1.02426 1.86489 1.23379 1.33760 1.83741 1.23658 0.80869 0.92401 0.71856 1.90674 1.60785 1.43633 1.45269 1.21312 0.88152 0.89683 1.02762 0.88656 1.21894 1.02874 1.00424 0.94582 1.61700 1.04249 1.15270 1.41630 1.22356 0.96025 0.87893 1.00553 1.21749 0.94082 0.97903 1.00222 1.18931 0.94362 0.92525 0.94908 1.21657 0.99407 0.93496 1.43200 0.92768 1.25904 1.02866 0.95097 0.95708 1.70076 1.38675 0.98882 1.49539 0.85525 0.79381 0.78025 0.78595 1.19833 1.20603 1.19059 1.22585 0.92549 1.00116 0.92880 1.23684 1.05290 0.98902 0.97592 1.23195 0.97737 0.98665 1.01717 0.91142 0.91193 0.88268 0.91621 0.91400 0.90196 0.92201 0.88547 0.93509 0.89588 0.91559 0.93806 0.98835 0.98808 0.92791 0.86703 0.88641 0.87413 0.87800 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.89 6.19 71.98 0.45 1.33 16 3 O -0.36 -7.58 10.12 -51.35 -0.52 -8.10 16 4 C 0.47 12.12 6.66 71.23 0.47 12.59 16 5 O -0.52 -16.28 13.86 21.96 0.30 -15.97 16 6 C 0.09 2.23 2.58 44.17 0.11 2.34 16 7 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 8 C -0.14 -3.01 8.97 71.98 0.65 -2.36 16 9 N -0.50 -15.64 4.35 -850.27 -3.70 -19.33 16 10 C 0.06 1.97 4.41 86.30 0.38 2.35 16 11 C -0.10 -4.32 4.20 30.59 0.13 -4.19 16 12 C 0.03 1.60 4.97 29.85 0.15 1.75 16 13 C -0.54 -31.25 9.11 25.60 0.23 -31.01 16 14 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.00 0.11 5.46 84.66 0.46 0.58 16 16 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 17 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.03 0.84 4.85 44.92 0.22 1.06 16 22 C -0.22 -6.52 8.90 30.59 0.27 -6.24 16 23 C -0.18 -5.54 9.62 30.60 0.29 -5.25 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 28 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.08 1.73 6.03 -2.39 -0.01 1.71 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.10 1.58 8.11 -2.39 -0.02 1.56 16 32 H 0.05 1.58 6.27 -2.39 -0.01 1.56 16 33 H 0.09 2.77 5.52 -2.39 -0.01 2.75 16 34 H 0.07 2.81 3.82 -2.39 -0.01 2.80 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.12 3.37 6.08 -2.39 -0.01 3.36 16 40 H 0.10 3.33 4.77 -2.39 -0.01 3.32 16 41 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.09 3.18 5.97 -2.39 -0.01 3.16 16 Total: -1.00 -67.83 339.01 3.94 -63.89 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.98 Total: 16.74 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 4.56 Total: -27.76 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -3.41 Total: -75.83 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.22 Total: -24.07 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.83 3.94 -63.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190845776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.313 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds