Wall clock time and date at job start Mon Mar 30 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47032 * 2 1 4 4 C 1.46494 * 119.99811 * 267.22563 * 3 2 1 5 5 C 1.50700 * 109.47066 * 269.99705 * 4 3 2 6 6 H 1.08005 * 120.00157 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00419 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99714 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00173 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47117 * 120.00059 * 9 7 5 12 12 H 1.48504 * 109.46820 * 240.00110 * 9 7 5 13 13 C 1.34770 * 119.99969 * 87.21784 * 3 2 1 14 14 O 1.21286 * 119.99997 * 175.45189 * 13 3 2 15 15 C 1.50701 * 120.00340 * 355.45625 * 13 3 2 16 16 H 1.09002 * 110.56289 * 355.71346 * 15 13 3 17 17 C 1.54509 * 110.51300 * 118.38997 * 15 13 3 18 18 H 1.08998 * 110.51393 * 237.29487 * 17 15 13 19 19 C 1.53004 * 110.50970 * 359.86756 * 17 15 13 20 20 C 1.54473 * 104.06450 * 118.64711 * 17 15 13 21 21 H 1.09000 * 110.37915 * 217.19426 * 20 17 15 22 22 C 1.53001 * 110.37345 * 94.85141 * 20 17 15 23 23 O 1.44432 * 104.80206 * 336.02492 * 20 17 15 24 24 C 1.44424 * 105.27584 * 40.50745 * 23 20 17 25 25 H 1.09004 * 110.36813 * 78.32306 * 24 23 20 26 26 C 1.52995 * 110.37441 * 200.65818 * 24 23 20 27 27 H 1.09005 * 109.47033 * 64.93243 * 1 2 3 28 28 H 1.08995 * 109.47284 * 184.92990 * 1 2 3 29 29 H 1.09000 * 109.47348 * 304.93238 * 1 2 3 30 30 H 1.09002 * 109.47377 * 240.00091 * 2 1 3 31 31 H 1.09001 * 109.47207 * 119.99495 * 2 1 3 32 32 H 1.08994 * 109.47646 * 29.99700 * 4 3 2 33 33 H 1.09006 * 109.47370 * 149.99803 * 4 3 2 34 34 H 0.96995 * 119.99976 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47349 * 65.40350 * 19 17 15 36 36 H 1.09005 * 109.46963 * 185.39981 * 19 17 15 37 37 H 1.09000 * 109.47268 * 305.40038 * 19 17 15 38 38 H 1.08995 * 109.46924 * 60.00529 * 22 20 17 39 39 H 1.09002 * 109.47203 * 179.97438 * 22 20 17 40 40 H 1.09000 * 109.47075 * 300.00284 * 22 20 17 41 41 H 1.08997 * 109.47423 * 167.62607 * 26 24 23 42 42 H 1.09002 * 109.47239 * 287.63085 * 26 24 23 43 43 H 1.09006 * 109.47141 * 47.62371 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3204 2.0514 -1.2672 5 6 3.7620 1.8082 -1.6329 6 1 4.3903 1.2135 -0.9863 7 6 4.2789 2.3447 -2.7930 8 7 3.5138 3.0684 -3.5808 9 14 6.0657 2.0426 -3.2467 10 1 6.7063 1.2032 -2.2026 11 1 6.1328 1.3432 -4.5549 12 1 6.7784 3.3419 -3.3428 13 6 2.1895 2.0355 1.1658 14 8 2.6712 3.1486 1.1715 15 6 1.7826 1.3840 2.4623 16 1 1.3015 0.4242 2.2740 17 6 3.0083 1.2033 3.3856 18 1 3.1332 0.1542 3.6537 19 6 4.2726 1.7364 2.7085 20 6 2.6643 2.0440 4.6350 21 1 3.5581 2.5348 5.0201 22 6 2.0332 1.1614 5.7137 23 8 1.7131 3.0258 4.1687 24 6 0.8430 2.3125 3.2631 25 1 0.1141 1.7248 3.8213 26 6 0.1339 3.2906 2.3245 27 1 -0.3633 0.4354 -0.9309 28 1 -0.3633 -1.0238 0.0883 29 1 -0.3634 0.5884 0.8425 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6749 1.6548 -2.0509 33 1 2.1480 3.1225 -1.1620 34 1 3.8776 3.4462 -4.3967 35 1 4.1867 2.8149 2.5762 36 1 5.1393 1.5147 3.3314 37 1 4.3926 1.2594 1.7358 38 1 2.7339 0.3758 5.9962 39 1 1.7970 1.7685 6.5876 40 1 1.1194 0.7111 5.3259 41 1 -0.3414 2.7372 1.5146 42 1 -0.6235 3.8434 2.8803 43 1 0.8615 3.9884 1.9097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226734691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:36 Heat of formation + Delta-G solvation = -87.222361 kcal Electronic energy + Delta-G solvation = -22775.470445 eV Core-core repulsion = 19627.673042 eV Total energy + Delta-G solvation = -3147.797404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68803 -38.11949 -35.25891 -33.32544 -32.90130 -32.07842 -30.06892 -29.53747 -27.69889 -26.36272 -23.55071 -23.06105 -22.97815 -20.92044 -20.25949 -17.94294 -17.12028 -16.37616 -16.03989 -15.35388 -15.15194 -14.78798 -14.49728 -14.08739 -13.53502 -13.30433 -13.19483 -12.91444 -12.62878 -12.34255 -12.21465 -12.06002 -11.82057 -11.77265 -11.48685 -11.32569 -11.21753 -11.02294 -10.89427 -10.84900 -10.73446 -10.56238 -10.46989 -10.29798 -10.07760 -9.57208 -9.50506 -8.61362 -8.42074 -7.58314 -6.02604 -4.06712 3.30113 3.36994 3.39307 3.43433 3.91095 4.03283 4.45880 4.63163 4.84521 4.91394 5.08368 5.14154 5.28703 5.30267 5.31986 5.44443 5.47661 5.49828 5.61393 5.62277 5.71575 5.72251 5.90987 5.94160 6.01378 6.01602 6.12001 6.17428 6.22334 6.23437 6.39549 6.48190 6.62093 6.85731 7.07214 7.13544 7.46682 7.60671 7.94458 8.26199 8.48585 8.93851 9.18827 9.58547 11.05437 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022629 B = 0.006203 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.067719 B = 4512.812946 C = 4957.522995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.524 3.476 14 O -0.525 6.525 15 C -0.148 4.148 16 H 0.096 0.904 17 C -0.100 4.100 18 H 0.081 0.919 19 C -0.152 4.152 20 C 0.074 3.926 21 H 0.100 0.900 22 C -0.172 4.172 23 O -0.355 6.355 24 C 0.095 3.905 25 H 0.068 0.932 26 C -0.161 4.161 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 -7.614 14.128 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.310 3.690 14 O -0.402 6.402 15 C -0.170 4.170 16 H 0.114 0.886 17 C -0.119 4.119 18 H 0.100 0.900 19 C -0.209 4.209 20 C 0.016 3.984 21 H 0.118 0.882 22 C -0.230 4.230 23 O -0.274 6.274 24 C 0.037 3.963 25 H 0.086 0.914 26 C -0.218 4.218 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.842 -6.682 13.978 16.558 hybrid contribution 0.943 -0.628 -0.469 1.226 sum -4.900 -7.310 13.509 16.123 Atomic orbital electron populations 1.22291 0.96945 1.01297 1.02476 1.21406 0.93364 0.84602 1.02457 1.48290 1.63955 1.12941 1.07936 1.19240 0.95824 0.93814 0.78278 1.21456 0.96085 1.32311 1.06130 0.92519 1.24925 0.97892 0.95014 0.96277 1.69938 1.35797 1.34386 1.13350 0.86483 0.85028 0.78043 0.78105 1.19859 1.21032 1.20905 1.19694 0.78938 0.86187 0.84142 1.90641 1.43347 1.19843 1.86343 1.23032 0.97728 1.00574 0.95639 0.88594 1.22417 0.95367 0.99891 0.94260 0.90032 1.22065 0.94561 1.04287 0.99996 1.23028 0.92583 0.89529 0.93230 0.88229 1.22293 1.01498 1.00022 0.99183 1.89206 1.44244 1.32326 1.61584 1.22706 0.91415 0.92600 0.89551 0.91433 1.22047 1.01006 1.00310 0.98395 0.92030 0.92260 0.92926 0.89919 0.91959 0.95216 0.94049 0.92841 0.89621 0.93468 0.91927 0.91631 0.91963 0.92316 0.91556 0.92501 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.95 37.16 0.37 -1.87 16 2 C 0.11 1.68 5.70 -4.04 -0.02 1.66 16 3 N -0.60 -12.36 2.46 -175.06 -0.43 -12.79 16 4 C 0.25 6.38 5.11 -5.20 -0.03 6.36 16 5 C -0.52 -14.64 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.52 10.54 3.59 -10.99 -0.04 10.51 16 14 O -0.52 -12.76 12.29 5.55 0.07 -12.70 16 15 C -0.15 -2.27 2.67 -90.21 -0.24 -2.51 16 16 H 0.10 1.25 5.16 -51.93 -0.27 0.98 16 17 C -0.10 -1.42 3.25 -89.05 -0.29 -1.71 16 18 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 19 C -0.15 -2.58 7.83 37.16 0.29 -2.29 16 20 C 0.07 0.99 3.76 -25.96 -0.10 0.89 16 21 H 0.10 1.28 7.88 -51.93 -0.41 0.87 16 22 C -0.17 -1.73 9.32 37.16 0.35 -1.38 16 23 O -0.35 -5.78 11.10 -35.23 -0.39 -6.17 16 24 C 0.10 1.41 3.32 -25.96 -0.09 1.32 16 25 H 0.07 0.83 7.23 -51.93 -0.38 0.45 16 26 C -0.16 -2.54 8.51 37.16 0.32 -2.22 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.66 6.88 -51.93 -0.36 0.30 16 30 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 31 H 0.06 0.85 6.43 -51.93 -0.33 0.51 16 32 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.04 1.21 7.49 -51.93 -0.39 0.82 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.08 1.72 6.38 -51.93 -0.33 1.39 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.22 7.28 -51.93 -0.38 0.84 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.56 6.94 -51.93 -0.36 0.20 16 41 H 0.07 1.00 7.40 -51.93 -0.38 0.62 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.76 6.16 -51.93 -0.32 1.44 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -32.15 332.03 -7.17 -39.32 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.23 Total: 0.88 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 0.10 Total: -4.59 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.31 Total: -38.66 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.32 Total: -18.87 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.15 -7.17 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226734691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.906 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds