Wall clock time and date at job start Mon Mar 30 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47032 * 2 1 4 4 C 1.46494 * 119.99811 * 267.22563 * 3 2 1 5 5 C 1.50700 * 109.47066 * 269.99705 * 4 3 2 6 6 H 1.08005 * 120.00157 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00419 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99714 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00173 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47117 * 120.00059 * 9 7 5 12 12 H 1.48504 * 109.46820 * 240.00110 * 9 7 5 13 13 C 1.34770 * 119.99969 * 87.21784 * 3 2 1 14 14 O 1.21286 * 119.99997 * 175.45189 * 13 3 2 15 15 C 1.50701 * 120.00340 * 355.45625 * 13 3 2 16 16 H 1.09002 * 110.56289 * 355.71346 * 15 13 3 17 17 C 1.54509 * 110.51300 * 118.38997 * 15 13 3 18 18 H 1.08998 * 110.51393 * 237.29487 * 17 15 13 19 19 C 1.53004 * 110.50970 * 359.86756 * 17 15 13 20 20 C 1.54473 * 104.06450 * 118.64711 * 17 15 13 21 21 H 1.09000 * 110.37915 * 217.19426 * 20 17 15 22 22 C 1.53001 * 110.37345 * 94.85141 * 20 17 15 23 23 O 1.44432 * 104.80206 * 336.02492 * 20 17 15 24 24 C 1.44424 * 105.27584 * 40.50745 * 23 20 17 25 25 H 1.09004 * 110.36813 * 78.32306 * 24 23 20 26 26 C 1.52995 * 110.37441 * 200.65818 * 24 23 20 27 27 H 1.09005 * 109.47033 * 64.93243 * 1 2 3 28 28 H 1.08995 * 109.47284 * 184.92990 * 1 2 3 29 29 H 1.09000 * 109.47348 * 304.93238 * 1 2 3 30 30 H 1.09002 * 109.47377 * 240.00091 * 2 1 3 31 31 H 1.09001 * 109.47207 * 119.99495 * 2 1 3 32 32 H 1.08994 * 109.47646 * 29.99700 * 4 3 2 33 33 H 1.09006 * 109.47370 * 149.99803 * 4 3 2 34 34 H 0.96995 * 119.99976 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47349 * 65.40350 * 19 17 15 36 36 H 1.09005 * 109.46963 * 185.39981 * 19 17 15 37 37 H 1.09000 * 109.47268 * 305.40038 * 19 17 15 38 38 H 1.08995 * 109.46924 * 60.00529 * 22 20 17 39 39 H 1.09002 * 109.47203 * 179.97438 * 22 20 17 40 40 H 1.09000 * 109.47075 * 300.00284 * 22 20 17 41 41 H 1.08997 * 109.47423 * 167.62607 * 26 24 23 42 42 H 1.09002 * 109.47239 * 287.63085 * 26 24 23 43 43 H 1.09006 * 109.47141 * 47.62371 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3204 2.0514 -1.2672 5 6 3.7620 1.8082 -1.6329 6 1 4.3903 1.2135 -0.9863 7 6 4.2789 2.3447 -2.7930 8 7 3.5138 3.0684 -3.5808 9 14 6.0657 2.0426 -3.2467 10 1 6.7063 1.2032 -2.2026 11 1 6.1328 1.3432 -4.5549 12 1 6.7784 3.3419 -3.3428 13 6 2.1895 2.0355 1.1658 14 8 2.6712 3.1486 1.1715 15 6 1.7826 1.3840 2.4623 16 1 1.3015 0.4242 2.2740 17 6 3.0083 1.2033 3.3856 18 1 3.1332 0.1542 3.6537 19 6 4.2726 1.7364 2.7085 20 6 2.6643 2.0440 4.6350 21 1 3.5581 2.5348 5.0201 22 6 2.0332 1.1614 5.7137 23 8 1.7131 3.0258 4.1687 24 6 0.8430 2.3125 3.2631 25 1 0.1141 1.7248 3.8213 26 6 0.1339 3.2906 2.3245 27 1 -0.3633 0.4354 -0.9309 28 1 -0.3633 -1.0238 0.0883 29 1 -0.3634 0.5884 0.8425 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6749 1.6548 -2.0509 33 1 2.1480 3.1225 -1.1620 34 1 3.8776 3.4462 -4.3967 35 1 4.1867 2.8149 2.5762 36 1 5.1393 1.5147 3.3314 37 1 4.3926 1.2594 1.7358 38 1 2.7339 0.3758 5.9962 39 1 1.7970 1.7685 6.5876 40 1 1.1194 0.7111 5.3259 41 1 -0.3414 2.7372 1.5146 42 1 -0.6235 3.8434 2.8803 43 1 0.8615 3.9884 1.9097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226734691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:36 Heat of formation + Delta-G solvation = -108.368337 kcal Electronic energy + Delta-G solvation = -22776.387404 eV Core-core repulsion = 19627.673042 eV Total energy + Delta-G solvation = -3148.714362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.99901 -39.54789 -36.88940 -34.98519 -34.46186 -33.40574 -31.55293 -30.52548 -29.40294 -27.94310 -25.28383 -24.33615 -24.25067 -22.36337 -21.36631 -19.43133 -18.69858 -18.32511 -17.36491 -16.78425 -16.66264 -16.22624 -16.02033 -15.48685 -14.83899 -14.66314 -14.43739 -14.29710 -14.05220 -13.78498 -13.47412 -13.34533 -13.24901 -13.12781 -13.00554 -12.74408 -12.66298 -12.61012 -12.46967 -12.26769 -12.16845 -12.03729 -11.81245 -11.71644 -11.64351 -11.39048 -10.65132 -10.61396 -10.21461 -9.33415 -8.22063 -6.36265 1.33315 1.36083 1.47388 1.88647 2.30624 2.46292 2.91736 3.07017 3.45461 3.60572 3.80577 3.97384 4.07919 4.14421 4.30469 4.36155 4.41501 4.42930 4.43306 4.54581 4.59801 4.62934 4.73493 4.86723 4.89186 4.95206 4.99859 5.01785 5.05922 5.10533 5.18395 5.22020 5.31908 5.36241 5.42684 5.46357 5.61256 5.91120 6.02934 6.08573 6.72318 6.89135 7.30470 7.62154 8.84705 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022629 B = 0.006203 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.067719 B = 4512.812946 C = 4957.522995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.534 4.534 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.519 3.481 14 O -0.578 6.578 15 C -0.141 4.141 16 H 0.131 0.869 17 C -0.098 4.098 18 H 0.122 0.878 19 C -0.146 4.146 20 C 0.071 3.929 21 H 0.095 0.905 22 C -0.163 4.163 23 O -0.386 6.386 24 C 0.096 3.904 25 H 0.112 0.888 26 C -0.159 4.159 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.019 0.981 33 H -0.007 1.007 34 H 0.266 0.734 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.030 0.970 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 -10.676 16.418 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.338 5.338 4 C 0.144 3.856 5 C -0.573 4.573 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.308 3.692 14 O -0.458 6.458 15 C -0.163 4.163 16 H 0.149 0.851 17 C -0.116 4.116 18 H 0.140 0.860 19 C -0.203 4.203 20 C 0.014 3.986 21 H 0.113 0.887 22 C -0.221 4.221 23 O -0.306 6.306 24 C 0.039 3.961 25 H 0.129 0.871 26 C -0.216 4.216 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.037 0.963 33 H 0.011 0.989 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.246 -9.790 16.285 20.002 hybrid contribution 1.065 0.386 -1.190 1.643 sum -5.182 -9.404 15.095 18.525 Atomic orbital electron populations 1.22225 0.94377 1.03723 1.01821 1.21741 0.95459 0.81743 1.03534 1.48309 1.64260 1.14839 1.06389 1.18631 0.94776 0.91496 0.80692 1.21707 0.97115 1.32241 1.06193 0.93131 1.25828 1.02472 0.94635 0.96228 1.70056 1.37849 1.35215 1.13855 0.85427 0.79376 0.77945 0.78428 1.19185 1.19327 1.20941 1.20596 0.77592 0.85560 0.85425 1.90627 1.45546 1.22436 1.87226 1.23097 0.98906 1.01643 0.92621 0.85131 1.22532 0.92929 1.02149 0.94024 0.85982 1.21937 0.97756 1.01324 0.99299 1.23208 0.92448 0.89382 0.93609 0.88688 1.22233 1.02210 0.99831 0.97784 1.89183 1.45181 1.34256 1.61959 1.22888 0.91687 0.92194 0.89364 0.87096 1.21997 1.00439 1.00119 0.99083 0.94117 0.88392 0.92005 0.91111 0.88613 0.96317 0.98928 0.92525 0.93774 0.90877 0.95078 0.89393 0.91592 0.91166 0.91280 0.90541 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.95 71.98 0.72 -3.13 16 2 C 0.10 2.95 5.70 86.38 0.49 3.44 16 3 N -0.61 -25.65 2.46 -826.15 -2.03 -27.69 16 4 C 0.27 14.53 5.11 85.63 0.44 14.97 16 5 C -0.53 -31.25 9.39 25.60 0.24 -31.01 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 9 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 13 C 0.52 21.39 3.59 87.66 0.31 21.70 16 14 O -0.58 -30.11 12.29 -3.05 -0.04 -30.14 16 15 C -0.14 -4.02 2.67 -10.53 -0.03 -4.05 16 16 H 0.13 2.77 5.16 -2.39 -0.01 2.76 16 17 C -0.10 -2.50 3.25 -9.78 -0.03 -2.53 16 18 H 0.12 2.21 7.87 -2.39 -0.02 2.19 16 19 C -0.15 -4.96 7.83 71.98 0.56 -4.39 16 20 C 0.07 1.70 3.76 31.10 0.12 1.81 16 21 H 0.10 2.30 7.88 -2.39 -0.02 2.28 16 22 C -0.16 -2.48 9.32 71.98 0.67 -1.81 16 23 O -0.39 -12.09 11.10 -148.98 -1.65 -13.74 16 24 C 0.10 2.62 3.32 31.09 0.10 2.73 16 25 H 0.11 2.14 7.23 -2.38 -0.02 2.12 16 26 C -0.16 -5.02 8.51 71.98 0.61 -4.41 16 27 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.35 6.88 -2.39 -0.02 1.33 16 30 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 31 H 0.10 2.25 6.43 -2.39 -0.02 2.23 16 32 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 33 H -0.01 -0.47 7.49 -2.38 -0.02 -0.49 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.04 1.86 6.38 -2.39 -0.02 1.84 16 36 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.03 1.22 7.28 -2.39 -0.02 1.20 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.93 6.94 -2.39 -0.02 0.91 16 41 H 0.07 2.07 7.40 -2.39 -0.02 2.06 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.04 1.75 6.16 -2.38 -0.01 1.74 16 Total: -1.00 -76.83 332.03 4.23 -72.60 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.97 Total: 13.88 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.67 Total: -5.82 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -1.75 Total: -84.65 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.69 Total: -43.88 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.83 4.23 -72.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226734691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.773 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds