Wall clock time and date at job start Mon Mar 30 2020 01:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47535 * 2 1 4 4 C 1.42901 * 114.00258 * 180.02562 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 4 3 2 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 4 3 7 7 C 1.52999 * 113.61451 * 220.01770 * 6 5 4 8 8 C 1.50699 * 109.47130 * 272.49762 * 7 6 5 9 9 O 1.21284 * 119.99980 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00176 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99908 * 359.97438 * 10 8 7 12 12 C 1.52996 * 109.47208 * 90.00000 * 11 10 8 13 13 C 1.46504 * 120.00093 * 180.02562 * 10 8 7 14 14 C 1.50701 * 109.47081 * 89.99834 * 13 10 8 15 15 H 1.07997 * 120.00179 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99847 * 180.02562 * 14 13 10 17 17 N 1.31507 * 119.99895 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99948 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47060 * 90.00260 * 18 16 14 20 20 H 1.48500 * 109.46988 * 210.00306 * 18 16 14 21 21 H 1.48500 * 109.46991 * 330.00269 * 18 16 14 22 22 C 1.53781 * 113.61413 * 208.47320 * 4 3 2 23 23 H 1.09005 * 109.46855 * 59.99452 * 1 2 3 24 24 H 1.08992 * 109.47444 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46871 * 300.00023 * 1 2 3 26 26 H 1.09002 * 109.47293 * 240.00060 * 2 1 3 27 27 H 1.09002 * 109.46988 * 119.99797 * 2 1 3 28 28 H 1.09002 * 112.84974 * 339.66626 * 4 3 2 29 29 H 1.09003 * 113.60734 * 254.54335 * 5 4 3 30 30 H 1.08996 * 113.61146 * 25.43833 * 5 4 3 31 31 H 1.09005 * 113.69135 * 89.12376 * 6 5 4 32 32 H 1.09003 * 109.47100 * 32.49589 * 7 6 5 33 33 H 1.08995 * 109.47213 * 152.50009 * 7 6 5 34 34 H 1.09000 * 109.47241 * 210.00137 * 11 10 8 35 35 H 1.09002 * 109.47339 * 330.00323 * 11 10 8 36 36 H 1.08998 * 109.47422 * 59.99916 * 12 11 10 37 37 H 1.08997 * 109.47524 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47132 * 300.00204 * 12 11 10 39 39 H 1.08995 * 109.46850 * 210.00185 * 13 10 8 40 40 H 1.09002 * 109.46820 * 330.00239 * 13 10 8 41 41 H 0.97000 * 120.00397 * 179.97438 * 17 16 14 42 42 H 1.09005 * 113.61302 * 334.47944 * 22 4 3 43 43 H 1.08993 * 113.62030 * 105.38790 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0067 2.0106 -1.3160 6 6 4.9921 2.8184 -0.4551 7 6 5.2358 4.2379 -0.9712 8 6 6.3561 4.2205 -1.9791 9 8 6.9052 3.1755 -2.2574 10 7 6.7472 5.3660 -2.5718 11 6 6.0829 6.6280 -2.2368 12 6 6.8064 7.2890 -1.0619 13 6 7.8359 5.3490 -3.5520 14 6 7.2679 5.1254 -4.9298 15 1 6.2025 5.0082 -5.0622 16 6 8.1085 5.0705 -6.0214 17 7 7.6127 4.8759 -7.2238 18 14 9.9512 5.2740 -5.7924 19 1 10.5710 3.9445 -5.5610 20 1 10.5367 5.8877 -7.0114 21 1 10.2108 6.1515 -4.6229 22 6 3.9476 2.7433 0.6711 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9274 0.5544 0.3481 29 1 4.4870 1.2518 -1.9338 30 1 3.3049 2.6303 -1.8742 31 1 5.9159 2.2854 -0.2300 32 1 4.3281 4.6137 -1.4435 33 1 5.5069 4.8860 -0.1379 34 1 6.1092 7.2928 -3.1002 35 1 5.0468 6.4312 -1.9612 36 1 7.8425 7.4857 -1.3374 37 1 6.3119 8.2277 -0.8123 38 1 6.7801 6.6241 -0.1985 39 1 8.3627 6.3028 -3.5264 40 1 8.5300 4.5440 -3.3101 41 1 8.2040 4.8377 -7.9919 42 1 3.2296 3.5634 0.6562 43 1 4.3802 2.5761 1.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232159743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:53 Heat of formation + Delta-G solvation = -94.796046 kcal Electronic energy + Delta-G solvation = -20986.256638 eV Core-core repulsion = 17838.130815 eV Total energy + Delta-G solvation = -3148.125823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14178 -39.98026 -37.49107 -36.85347 -34.87866 -32.38201 -31.82423 -30.86968 -29.12842 -26.63100 -25.03049 -24.29881 -23.73072 -23.04875 -20.48093 -19.80712 -19.11461 -17.90113 -17.83836 -17.05930 -16.62437 -16.49568 -16.27159 -15.75629 -15.35889 -14.69174 -14.63916 -14.34962 -14.24682 -13.75269 -13.62720 -13.42023 -13.33508 -13.25696 -13.07403 -12.97399 -12.56935 -12.40169 -12.26901 -12.11241 -12.03234 -11.89735 -11.75499 -11.71103 -11.52290 -11.22180 -10.84668 -10.55491 -10.33398 -9.38349 -8.35518 -6.40446 1.30521 1.34722 1.43423 1.86547 2.29363 2.35538 2.79864 2.98733 3.51073 3.64743 3.83049 3.88521 3.98117 4.14256 4.18382 4.21402 4.37052 4.43137 4.50551 4.57984 4.61934 4.68152 4.74895 4.82805 4.85689 4.89373 4.90458 4.95666 5.02840 5.03448 5.04705 5.11527 5.25771 5.28639 5.40992 5.46051 5.48929 5.68628 6.23845 6.36618 6.60823 6.76653 7.20814 7.48188 8.81680 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.004023 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.052037 B = 6958.672133 C = 7627.029977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.393 6.393 4 C 0.066 3.934 5 C -0.160 4.160 6 C -0.094 4.094 7 C -0.114 4.114 8 C 0.495 3.505 9 O -0.595 6.595 10 N -0.604 5.604 11 C 0.098 3.902 12 C -0.160 4.160 13 C 0.225 3.775 14 C -0.536 4.536 15 H 0.026 0.974 16 C 0.009 3.991 17 N -0.946 5.946 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.274 1.274 21 H -0.238 1.238 22 C -0.110 4.110 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.268 0.732 42 H 0.100 0.900 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -1.406 20.494 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.312 6.312 4 C 0.008 3.992 5 C -0.198 4.198 6 C -0.113 4.113 7 C -0.153 4.153 8 C 0.285 3.715 9 O -0.477 6.477 10 N -0.335 5.335 11 C -0.024 4.024 12 C -0.218 4.218 13 C 0.103 3.897 14 C -0.574 4.574 15 H 0.044 0.956 16 C -0.188 4.188 17 N -0.586 5.586 18 Si 0.772 3.228 19 H -0.202 1.202 20 H -0.199 1.199 21 H -0.162 1.162 22 C -0.147 4.147 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.318 -1.767 20.166 22.285 hybrid contribution 0.969 -0.460 -1.200 1.610 sum -8.348 -2.227 18.966 20.842 Atomic orbital electron populations 1.21760 0.92809 1.03305 1.02706 1.22702 0.96487 0.83364 1.00488 1.87914 1.21086 1.27581 1.94638 1.23692 0.80643 0.98992 0.95840 1.23589 0.98317 1.00146 0.97703 1.22030 0.97562 0.94581 0.97100 1.21698 0.96436 0.99307 0.97883 1.21492 0.84927 0.82693 0.82371 1.90614 1.58664 1.32401 1.65984 1.48121 1.36153 1.08524 1.40738 1.21762 0.97339 0.84383 0.98957 1.22151 1.00652 1.01690 0.97272 1.19256 0.87096 0.96890 0.86491 1.21586 0.94096 1.49669 0.92094 0.95557 1.25879 1.04519 0.93987 0.94462 1.70052 1.37659 1.51225 0.99709 0.85694 0.78688 0.79309 0.79127 1.20206 1.19871 1.16150 1.23185 0.96481 0.97187 0.97852 0.92788 0.89314 0.91682 0.93862 0.92009 0.88568 0.93621 0.90410 0.89558 0.87926 0.85672 0.91375 0.88575 0.93684 0.88779 0.91631 0.93586 0.96582 0.92268 0.88185 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.84 6.50 71.98 0.47 1.31 16 3 O -0.39 -9.30 10.36 -148.98 -1.54 -10.84 16 4 C 0.07 1.49 4.30 31.12 0.13 1.63 16 5 C -0.16 -4.64 7.47 31.12 0.23 -4.41 16 6 C -0.09 -2.48 3.15 -10.27 -0.03 -2.51 16 7 C -0.11 -3.08 4.09 29.85 0.12 -2.96 16 8 C 0.50 20.16 7.67 87.66 0.67 20.84 16 9 O -0.60 -30.23 15.34 -3.04 -0.05 -30.27 16 10 N -0.60 -24.86 2.46 -826.16 -2.03 -26.89 16 11 C 0.10 2.89 5.93 86.38 0.51 3.40 16 12 C -0.16 -3.48 10.24 71.98 0.74 -2.74 16 13 C 0.23 11.26 4.23 85.63 0.36 11.63 16 14 C -0.54 -32.40 9.94 25.60 0.25 -32.15 16 15 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 16 C 0.01 0.56 5.47 84.66 0.46 1.03 16 17 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 18 Si 0.95 45.41 27.47 68.60 1.88 47.30 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 22 C -0.11 -2.11 7.47 31.12 0.23 -1.88 16 23 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 1.92 7.88 -2.39 -0.02 1.90 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 2.37 7.90 -2.39 -0.02 2.35 16 31 H 0.09 2.56 7.68 -2.38 -0.02 2.54 16 32 H 0.10 2.55 7.10 -2.39 -0.02 2.53 16 33 H 0.13 2.47 7.19 -2.39 -0.02 2.45 16 34 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 35 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 36 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.27 7.22 -2.39 -0.02 1.26 16 39 H 0.05 2.12 7.13 -2.39 -0.02 2.11 16 40 H 0.02 0.87 6.85 -2.39 -0.02 0.85 16 41 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 42 H 0.10 1.78 8.10 -2.38 -0.02 1.76 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.95 348.26 4.36 -74.59 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.90 Total: 15.16 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 4.90 Total: -8.31 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -1.73 Total: -87.62 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -1.59 Total: -41.12 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.30 kcal Total: -78.95 4.36 -74.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232159743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.210 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds