Wall clock time and date at job start Mon Mar 30 2020 01:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47041 * 2 1 4 4 C 1.46507 * 120.00003 * 263.90430 * 3 2 1 5 5 C 1.50701 * 109.47174 * 270.00544 * 4 3 2 6 6 H 1.07999 * 119.99871 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99761 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00388 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99741 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47628 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47248 * 120.00107 * 9 7 5 12 12 H 1.48502 * 109.47420 * 239.99615 * 9 7 5 13 13 C 1.34774 * 120.00490 * 83.90767 * 3 2 1 14 14 O 1.21281 * 120.00106 * 184.51306 * 13 3 2 15 15 C 1.50701 * 119.99852 * 4.51252 * 13 3 2 16 16 H 1.09001 * 110.45507 * 1.54472 * 15 13 3 17 17 C 1.54480 * 110.51051 * 238.79688 * 15 13 3 18 18 H 1.08994 * 110.37484 * 146.49942 * 17 15 13 19 19 C 1.53002 * 110.37137 * 24.16237 * 17 15 13 20 20 O 1.44430 * 104.80301 * 265.33463 * 17 15 13 21 21 C 1.44424 * 105.27179 * 319.48518 * 20 17 15 22 22 H 1.09001 * 110.37233 * 159.34538 * 21 20 17 23 23 C 1.53006 * 110.37259 * 281.68464 * 21 20 17 24 24 C 1.54476 * 104.80396 * 40.51283 * 21 20 17 25 25 H 1.09001 * 110.62606 * 94.71932 * 24 21 20 26 26 C 1.53001 * 110.51221 * 217.37349 * 24 21 20 27 27 H 1.09001 * 109.47367 * 174.68665 * 1 2 3 28 28 H 1.08996 * 109.47382 * 294.69107 * 1 2 3 29 29 H 1.08998 * 109.46827 * 54.69287 * 1 2 3 30 30 H 1.08998 * 109.47696 * 239.99234 * 2 1 3 31 31 H 1.09006 * 109.46767 * 119.99493 * 2 1 3 32 32 H 1.09000 * 109.46461 * 29.99780 * 4 3 2 33 33 H 1.09000 * 109.47225 * 149.99779 * 4 3 2 34 34 H 0.96990 * 120.00531 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.47150 * 56.40591 * 19 17 15 36 36 H 1.09004 * 109.47049 * 176.40073 * 19 17 15 37 37 H 1.09003 * 109.47371 * 296.40250 * 19 17 15 38 38 H 1.09002 * 109.46973 * 175.38429 * 23 21 20 39 39 H 1.09003 * 109.46819 * 295.37820 * 23 21 20 40 40 H 1.08996 * 109.47147 * 55.38001 * 23 21 20 41 41 H 1.09007 * 109.47091 * 174.63848 * 26 24 21 42 42 H 1.08997 * 109.47434 * 294.64433 * 26 24 21 43 43 H 1.09001 * 109.46998 * 54.64580 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3894 2.0269 -1.2616 5 6 3.8487 1.7773 -1.5434 6 1 4.4405 1.1962 -0.8517 7 6 4.4281 2.2908 -2.6842 8 7 3.7074 2.9980 -3.5268 9 14 6.2371 1.9820 -3.0331 10 1 6.8197 1.1640 -1.9393 11 1 6.3759 1.2562 -4.3212 12 1 6.9537 3.2800 -3.1168 13 6 2.1261 2.0579 1.1605 14 8 2.4518 3.2261 1.1533 15 6 1.8420 1.3629 2.4672 16 1 1.5912 0.3162 2.2953 17 6 0.7013 2.0786 3.2241 18 1 0.1070 1.3573 3.7849 19 6 -0.1836 2.8530 2.2452 20 8 1.3699 2.9881 4.1250 21 6 2.5029 2.2528 4.6363 22 1 3.2566 2.9383 5.0238 23 6 2.0566 1.2777 5.7276 24 6 3.0545 1.4801 3.4177 25 1 3.8604 2.0387 2.9415 26 6 3.5419 0.0923 3.8386 27 1 -0.3634 -1.0232 -0.0952 28 1 -0.3634 0.4293 0.9337 29 1 -0.3633 0.5939 -0.8386 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.7874 1.6148 -2.0715 33 1 2.2121 3.0998 -1.1866 34 1 4.1149 3.3590 -4.3295 35 1 -0.5650 2.1727 1.4839 36 1 -1.0189 3.2990 2.7852 37 1 0.4026 3.6392 1.7692 38 1 2.9067 0.6738 6.0450 39 1 1.6705 1.8377 6.5794 40 1 1.2747 0.6271 5.3359 41 1 3.8383 -0.4724 2.9545 42 1 4.3962 0.1946 4.5077 43 1 2.7382 -0.4343 4.3534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249822381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:38 Heat of formation + Delta-G solvation = -87.332167 kcal Electronic energy + Delta-G solvation = -22610.626043 eV Core-core repulsion = 19462.823878 eV Total energy + Delta-G solvation = -3147.802165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.63238 -38.20546 -35.23971 -33.84342 -32.97851 -32.09946 -30.07983 -29.00084 -27.72492 -26.45182 -24.26103 -23.20238 -22.97654 -20.91221 -19.75106 -18.10756 -16.99652 -16.35583 -16.05003 -15.72874 -15.10439 -14.85987 -14.33831 -14.19049 -14.00982 -13.44026 -13.22274 -12.85975 -12.71789 -12.33250 -12.14011 -12.10002 -12.03212 -11.69295 -11.62034 -11.44309 -11.31682 -11.13888 -10.91663 -10.82547 -10.71205 -10.55923 -10.43569 -10.33845 -10.12846 -9.59891 -9.53938 -8.71482 -8.43496 -7.61033 -6.04041 -4.08829 3.29074 3.35034 3.37877 3.42108 3.89503 4.02882 4.44178 4.59244 4.84674 4.92291 5.01274 5.11424 5.24456 5.25906 5.30152 5.42232 5.42749 5.47087 5.50111 5.59870 5.62969 5.68607 5.76896 5.88705 5.89481 5.95262 6.01809 6.08552 6.16223 6.20233 6.23073 6.40296 6.46688 6.59613 7.04909 7.11171 7.47613 7.58578 7.93136 8.24605 8.46736 8.91770 9.15908 9.56615 11.03975 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.006021 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.439750 B = 4649.244655 C = 5061.598501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.522 3.478 14 O -0.533 6.533 15 C -0.145 4.145 16 H 0.099 0.901 17 C 0.095 3.905 18 H 0.069 0.931 19 C -0.165 4.165 20 O -0.356 6.356 21 C 0.076 3.924 22 H 0.099 0.901 23 C -0.173 4.173 24 C -0.106 4.106 25 H 0.092 0.908 26 C -0.145 4.145 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -8.484 14.445 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 N -0.329 5.329 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.308 3.692 14 O -0.410 6.410 15 C -0.167 4.167 16 H 0.117 0.883 17 C 0.037 3.963 18 H 0.087 0.913 19 C -0.222 4.222 20 O -0.275 6.275 21 C 0.018 3.982 22 H 0.117 0.883 23 C -0.230 4.230 24 C -0.125 4.125 25 H 0.110 0.890 26 C -0.203 4.203 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.074 -7.537 14.279 17.250 hybrid contribution 1.089 -0.507 -0.442 1.280 sum -4.985 -8.044 13.837 16.764 Atomic orbital electron populations 1.22346 0.96936 1.01663 1.02308 1.21428 0.93341 0.84590 1.02545 1.48275 1.63221 1.12876 1.08555 1.19273 0.95196 0.94474 0.78442 1.21476 0.95160 1.33479 1.06296 0.92510 1.24932 0.98185 0.94957 0.96022 1.69938 1.36053 1.35189 1.12139 0.86467 0.85063 0.78051 0.77980 1.19852 1.20969 1.20871 1.19845 0.77889 0.86965 0.84494 1.90667 1.47396 1.16147 1.86763 1.22994 0.97031 1.01388 0.95258 0.88314 1.22708 0.92540 0.91237 0.89813 0.91338 1.22109 0.99486 1.02094 0.98476 1.89203 1.40831 1.36722 1.60747 1.22945 0.88727 0.93373 0.93114 0.88331 1.22364 1.01989 0.99770 0.98893 1.22454 0.97747 0.97409 0.94873 0.88972 1.21941 1.01087 0.95608 1.01621 0.92113 0.92809 0.91945 0.89847 0.91855 0.95132 0.93811 0.92787 0.91109 0.92280 0.89577 0.91177 0.92211 0.92248 0.92195 0.92164 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.06 37.16 0.37 -1.90 16 2 C 0.11 1.67 5.76 -4.05 -0.02 1.65 16 3 N -0.60 -12.53 2.47 -175.06 -0.43 -12.96 16 4 C 0.25 6.41 5.17 -5.19 -0.03 6.39 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.52 10.85 4.89 -10.99 -0.05 10.80 16 14 O -0.53 -13.56 14.69 5.56 0.08 -13.48 16 15 C -0.14 -2.26 2.46 -90.20 -0.22 -2.48 16 16 H 0.10 1.30 5.01 -51.93 -0.26 1.04 16 17 C 0.10 1.41 3.35 -25.95 -0.09 1.32 16 18 H 0.07 0.83 7.23 -51.93 -0.38 0.45 16 19 C -0.16 -2.57 8.58 37.16 0.32 -2.25 16 20 O -0.36 -5.86 11.10 -35.23 -0.39 -6.25 16 21 C 0.08 1.03 4.13 -25.95 -0.11 0.92 16 22 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 23 C -0.17 -1.72 8.11 37.16 0.30 -1.42 16 24 C -0.11 -1.54 3.19 -89.05 -0.28 -1.82 16 25 H 0.09 1.62 7.57 -51.93 -0.39 1.23 16 26 C -0.15 -1.61 7.85 37.16 0.29 -1.31 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.66 5.77 -51.93 -0.30 0.36 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 31 H 0.06 0.86 6.07 -51.93 -0.32 0.54 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.02 5.93 -51.93 -0.31 0.72 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.67 6.16 -51.93 -0.32 1.35 16 38 H 0.07 0.59 6.77 -51.93 -0.35 0.23 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.57 6.49 -51.93 -0.34 0.23 16 41 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.06 0.59 7.96 -51.93 -0.41 0.17 16 43 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -33.08 330.52 -6.99 -40.07 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.00 Total: 0.36 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 0.06 Total: -3.67 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.30 Total: -38.90 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.31 Total: -19.73 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.08 -6.99 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249822381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.263 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds