Wall clock time and date at job start Mon Mar 30 2020 01:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47041 * 2 1 4 4 C 1.46507 * 120.00003 * 263.90430 * 3 2 1 5 5 C 1.50701 * 109.47174 * 270.00544 * 4 3 2 6 6 H 1.07999 * 119.99871 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99761 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00388 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99741 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47628 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47248 * 120.00107 * 9 7 5 12 12 H 1.48502 * 109.47420 * 239.99615 * 9 7 5 13 13 C 1.34774 * 120.00490 * 83.90767 * 3 2 1 14 14 O 1.21281 * 120.00106 * 184.51306 * 13 3 2 15 15 C 1.50701 * 119.99852 * 4.51252 * 13 3 2 16 16 H 1.09001 * 110.45507 * 1.54472 * 15 13 3 17 17 C 1.54480 * 110.51051 * 238.79688 * 15 13 3 18 18 H 1.08994 * 110.37484 * 146.49942 * 17 15 13 19 19 C 1.53002 * 110.37137 * 24.16237 * 17 15 13 20 20 O 1.44430 * 104.80301 * 265.33463 * 17 15 13 21 21 C 1.44424 * 105.27179 * 319.48518 * 20 17 15 22 22 H 1.09001 * 110.37233 * 159.34538 * 21 20 17 23 23 C 1.53006 * 110.37259 * 281.68464 * 21 20 17 24 24 C 1.54476 * 104.80396 * 40.51283 * 21 20 17 25 25 H 1.09001 * 110.62606 * 94.71932 * 24 21 20 26 26 C 1.53001 * 110.51221 * 217.37349 * 24 21 20 27 27 H 1.09001 * 109.47367 * 174.68665 * 1 2 3 28 28 H 1.08996 * 109.47382 * 294.69107 * 1 2 3 29 29 H 1.08998 * 109.46827 * 54.69287 * 1 2 3 30 30 H 1.08998 * 109.47696 * 239.99234 * 2 1 3 31 31 H 1.09006 * 109.46767 * 119.99493 * 2 1 3 32 32 H 1.09000 * 109.46461 * 29.99780 * 4 3 2 33 33 H 1.09000 * 109.47225 * 149.99779 * 4 3 2 34 34 H 0.96990 * 120.00531 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.47150 * 56.40591 * 19 17 15 36 36 H 1.09004 * 109.47049 * 176.40073 * 19 17 15 37 37 H 1.09003 * 109.47371 * 296.40250 * 19 17 15 38 38 H 1.09002 * 109.46973 * 175.38429 * 23 21 20 39 39 H 1.09003 * 109.46819 * 295.37820 * 23 21 20 40 40 H 1.08996 * 109.47147 * 55.38001 * 23 21 20 41 41 H 1.09007 * 109.47091 * 174.63848 * 26 24 21 42 42 H 1.08997 * 109.47434 * 294.64433 * 26 24 21 43 43 H 1.09001 * 109.46998 * 54.64580 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3894 2.0269 -1.2616 5 6 3.8487 1.7773 -1.5434 6 1 4.4405 1.1962 -0.8517 7 6 4.4281 2.2908 -2.6842 8 7 3.7074 2.9980 -3.5268 9 14 6.2371 1.9820 -3.0331 10 1 6.8197 1.1640 -1.9393 11 1 6.3759 1.2562 -4.3212 12 1 6.9537 3.2800 -3.1168 13 6 2.1261 2.0579 1.1605 14 8 2.4518 3.2261 1.1533 15 6 1.8420 1.3629 2.4672 16 1 1.5912 0.3162 2.2953 17 6 0.7013 2.0786 3.2241 18 1 0.1070 1.3573 3.7849 19 6 -0.1836 2.8530 2.2452 20 8 1.3699 2.9881 4.1250 21 6 2.5029 2.2528 4.6363 22 1 3.2566 2.9383 5.0238 23 6 2.0566 1.2777 5.7276 24 6 3.0545 1.4801 3.4177 25 1 3.8604 2.0387 2.9415 26 6 3.5419 0.0923 3.8386 27 1 -0.3634 -1.0232 -0.0952 28 1 -0.3634 0.4293 0.9337 29 1 -0.3633 0.5939 -0.8386 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.7874 1.6148 -2.0715 33 1 2.2121 3.0998 -1.1866 34 1 4.1149 3.3590 -4.3295 35 1 -0.5650 2.1727 1.4839 36 1 -1.0189 3.2990 2.7852 37 1 0.4026 3.6392 1.7692 38 1 2.9067 0.6738 6.0450 39 1 1.6705 1.8377 6.5794 40 1 1.2747 0.6271 5.3359 41 1 3.8383 -0.4724 2.9545 42 1 4.3962 0.1946 4.5077 43 1 2.7382 -0.4343 4.3534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249822381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:38 Heat of formation + Delta-G solvation = -109.578013 kcal Electronic energy + Delta-G solvation = -22611.590696 eV Core-core repulsion = 19462.823878 eV Total energy + Delta-G solvation = -3148.766817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94379 -39.69143 -36.93281 -35.06207 -34.85059 -33.48008 -31.56997 -30.07368 -29.27711 -27.89953 -25.44958 -24.95409 -24.33283 -22.34239 -20.82139 -19.60627 -18.71860 -18.24897 -17.39459 -17.08227 -16.67436 -16.11193 -16.02603 -15.61775 -15.18032 -14.71471 -14.49823 -14.44445 -13.82112 -13.77040 -13.67513 -13.28147 -13.21182 -13.16239 -12.92821 -12.83308 -12.68299 -12.52310 -12.46156 -12.32491 -12.16184 -11.98141 -11.85327 -11.68239 -11.59579 -11.41846 -10.67357 -10.65511 -10.36852 -9.40391 -8.24425 -6.39769 1.33476 1.36132 1.47721 1.79972 2.28150 2.42691 2.89529 3.04745 3.42831 3.60001 3.78836 3.94712 4.01423 4.13414 4.29059 4.31132 4.38087 4.40517 4.41426 4.51245 4.59177 4.62210 4.78618 4.85133 4.87501 4.96907 5.01879 5.02747 5.05658 5.06381 5.18723 5.22577 5.27825 5.29599 5.42692 5.48041 5.56913 5.86865 5.98306 6.05054 6.68866 6.82315 7.26961 7.53270 8.82773 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.006021 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.439750 B = 4649.244655 C = 5061.598501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.515 3.485 14 O -0.594 6.594 15 C -0.136 4.136 16 H 0.133 0.867 17 C 0.096 3.904 18 H 0.115 0.885 19 C -0.164 4.164 20 O -0.388 6.388 21 C 0.072 3.928 22 H 0.091 0.909 23 C -0.163 4.163 24 C -0.108 4.108 25 H 0.045 0.955 26 C -0.139 4.139 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.021 0.979 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -11.799 16.640 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.334 5.334 4 C 0.140 3.860 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.304 3.696 14 O -0.475 6.475 15 C -0.157 4.157 16 H 0.150 0.850 17 C 0.038 3.962 18 H 0.133 0.867 19 C -0.221 4.221 20 O -0.308 6.308 21 C 0.014 3.986 22 H 0.109 0.891 23 C -0.220 4.220 24 C -0.128 4.128 25 H 0.064 0.936 26 C -0.196 4.196 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.039 0.961 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.325 -10.905 16.488 20.755 hybrid contribution 1.136 0.598 -1.148 1.722 sum -5.190 -10.307 15.340 19.196 Atomic orbital electron populations 1.22286 0.94343 1.03740 1.02059 1.21795 0.95459 0.81560 1.03784 1.48302 1.63225 1.14893 1.06950 1.18686 0.94476 0.91955 0.80835 1.21730 0.96149 1.33634 1.06458 0.92913 1.25877 1.03123 0.94468 0.95746 1.70060 1.38206 1.35940 1.12668 0.85368 0.78930 0.77997 0.78521 1.19010 1.19209 1.20881 1.20836 0.76340 0.86409 0.86023 1.90633 1.49969 1.19101 1.87749 1.23048 0.98289 1.02354 0.91995 0.84952 1.22925 0.92132 0.91482 0.89642 0.86728 1.22081 0.99707 1.01181 0.99099 1.89174 1.41898 1.38508 1.61212 1.23139 0.87972 0.93860 0.93600 0.89085 1.22309 1.03203 0.99094 0.97406 1.22472 0.95966 0.99437 0.94878 0.93601 1.21943 1.02654 0.92997 1.01969 0.88338 0.91488 0.94252 0.90768 0.88438 0.96125 0.98923 0.92415 0.90162 0.90314 0.94566 0.89028 0.91667 0.90854 0.92737 0.90773 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 10.06 71.98 0.72 -3.21 16 2 C 0.10 2.91 5.76 86.38 0.50 3.41 16 3 N -0.60 -26.04 2.47 -826.15 -2.04 -28.08 16 4 C 0.26 14.56 5.17 85.63 0.44 15.00 16 5 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.39 5.46 84.65 0.46 0.86 16 8 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 9 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 C 0.51 22.16 4.89 87.66 0.43 22.59 16 14 O -0.59 -32.57 14.69 -3.03 -0.04 -32.61 16 15 C -0.14 -4.02 2.46 -10.52 -0.03 -4.04 16 16 H 0.13 2.94 5.01 -2.39 -0.01 2.93 16 17 C 0.10 2.63 3.35 31.10 0.10 2.73 16 18 H 0.12 2.17 7.23 -2.39 -0.02 2.15 16 19 C -0.16 -5.06 8.58 71.98 0.62 -4.45 16 20 O -0.39 -12.48 11.10 -148.98 -1.65 -14.14 16 21 C 0.07 1.82 4.13 31.10 0.13 1.94 16 22 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 23 C -0.16 -2.55 8.11 71.98 0.58 -1.97 16 24 C -0.11 -3.02 3.19 -9.78 -0.03 -3.05 16 25 H 0.05 1.69 7.57 -2.39 -0.02 1.67 16 26 C -0.14 -2.56 7.85 71.98 0.57 -1.99 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.41 5.77 -2.39 -0.01 1.40 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 31 H 0.10 2.29 6.07 -2.38 -0.01 2.27 16 32 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 33 H -0.01 -0.48 7.36 -2.39 -0.02 -0.50 16 34 H 0.27 15.39 8.31 -92.72 -0.77 14.62 16 35 H 0.08 2.25 5.93 -2.39 -0.01 2.24 16 36 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.04 1.48 6.16 -2.39 -0.01 1.47 16 38 H 0.09 1.06 6.77 -2.39 -0.02 1.05 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.97 6.49 -2.39 -0.02 0.95 16 41 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.07 1.18 7.96 -2.39 -0.02 1.16 16 43 H 0.09 1.17 6.32 -2.39 -0.02 1.15 16 Total: -1.00 -79.21 330.52 4.29 -74.91 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.98 Total: 13.14 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 4.74 Total: -3.79 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.76 Total: -85.15 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -1.70 Total: -46.75 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -79.21 4.29 -74.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249822381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.664 kcal (2) G-P(sol) polarization free energy of solvation -79.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds