Wall clock time and date at job start Mon Mar 30 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46972 * 2 1 4 4 C 1.46490 * 120.00195 * 266.00999 * 3 2 1 5 5 C 1.50705 * 109.47204 * 269.99990 * 4 3 2 6 6 H 1.07998 * 119.99810 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00080 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99863 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99907 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47177 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47357 * 119.99488 * 9 7 5 12 12 H 1.48500 * 109.47330 * 239.99995 * 9 7 5 13 13 C 1.34776 * 119.99529 * 86.01000 * 3 2 1 14 14 O 1.21283 * 119.99987 * 175.18385 * 13 3 2 15 15 C 1.50705 * 120.00258 * 355.18772 * 13 3 2 16 16 H 1.08998 * 110.83293 * 351.30678 * 15 13 3 17 17 C 1.54814 * 110.90608 * 114.95257 * 15 13 3 18 18 H 1.09002 * 110.48439 * 216.12460 * 17 15 13 19 19 C 1.52992 * 110.48871 * 338.64162 * 17 15 13 20 20 C 1.54103 * 104.30452 * 97.38536 * 17 15 13 21 21 H 1.09003 * 109.87676 * 117.32467 * 20 17 15 22 22 C 1.52999 * 109.87793 * 238.48000 * 20 17 15 23 23 O 1.43748 * 107.29398 * 357.90091 * 20 17 15 24 24 C 1.44381 * 106.97251 * 26.51636 * 23 20 17 25 25 H 1.08993 * 110.62175 * 78.43900 * 24 23 20 26 26 C 1.53003 * 110.61647 * 201.43630 * 24 23 20 27 27 H 1.09001 * 109.46875 * 184.97741 * 1 2 3 28 28 H 1.08999 * 109.47120 * 304.97469 * 1 2 3 29 29 H 1.08998 * 109.47281 * 64.97655 * 1 2 3 30 30 H 1.08997 * 109.47087 * 240.00544 * 2 1 3 31 31 H 1.09004 * 109.46874 * 120.00364 * 2 1 3 32 32 H 1.08997 * 109.47623 * 30.00101 * 4 3 2 33 33 H 1.09001 * 109.47098 * 150.00291 * 4 3 2 34 34 H 0.97003 * 119.99295 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47131 * 181.38905 * 19 17 15 36 36 H 1.09001 * 109.47553 * 301.39331 * 19 17 15 37 37 H 1.09005 * 109.47457 * 61.39431 * 19 17 15 38 38 H 1.08993 * 109.47571 * 60.00092 * 22 20 17 39 39 H 1.08999 * 109.46679 * 180.02562 * 22 20 17 40 40 H 1.08998 * 109.46634 * 299.99583 * 22 20 17 41 41 H 1.09008 * 109.47146 * 53.48621 * 26 24 23 42 42 H 1.09000 * 109.47338 * 173.48222 * 26 24 23 43 43 H 1.09003 * 109.47351 * 293.48737 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3457 2.0424 -1.2655 5 6 3.7944 1.7968 -1.6007 6 1 4.4095 1.2067 -0.9375 7 6 4.3344 2.3253 -2.7539 8 7 3.5852 3.0433 -3.5618 9 14 6.1298 2.0201 -3.1697 10 1 6.7495 1.1880 -2.1071 11 1 6.2230 1.3114 -4.4713 12 1 6.8445 3.3186 -3.2606 13 6 2.1664 2.0436 1.1644 14 8 2.6524 3.1548 1.1725 15 6 1.7281 1.4035 2.4565 16 1 1.1784 0.4818 2.2655 17 6 2.9408 1.1417 3.3825 18 1 2.8063 0.2106 3.9331 19 6 4.2361 1.0994 2.5695 20 6 2.9489 2.3428 4.3479 21 1 2.7929 1.9978 5.3701 22 6 4.2829 3.0847 4.2441 23 8 1.8739 3.2131 3.9563 24 6 0.8822 2.3909 3.3044 25 1 0.2877 1.8500 4.0406 26 6 -0.0162 3.2419 2.4046 27 1 -0.3633 -1.0238 0.0892 28 1 -0.3633 0.5891 0.8421 29 1 -0.3634 0.4347 -0.9312 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7160 1.6404 -2.0592 33 1 2.1714 3.1143 -1.1712 34 1 3.9651 3.4148 -4.3733 35 1 5.0750 0.8899 3.2332 36 1 4.1659 0.3163 1.8145 37 1 4.3905 2.0618 2.0815 38 1 4.4214 3.4424 3.2239 39 1 4.2816 3.9321 4.9296 40 1 5.0963 2.4078 4.5053 41 1 0.6014 3.8216 1.7183 42 1 -0.6802 2.5919 1.8349 43 1 -0.6096 3.9188 3.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249822383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:40 Heat of formation + Delta-G solvation = -85.136895 kcal Electronic energy + Delta-G solvation = -22930.940232 eV Core-core repulsion = 19783.233261 eV Total energy + Delta-G solvation = -3147.706971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59996 -37.97058 -35.18237 -33.85188 -32.95862 -32.15263 -30.07105 -28.81304 -27.43664 -26.48706 -24.16480 -22.98010 -22.81097 -21.08124 -19.51151 -18.07399 -17.30946 -16.41083 -15.96567 -15.42028 -15.07400 -14.71033 -14.43264 -14.07726 -13.68715 -13.43374 -13.11953 -12.80846 -12.49242 -12.28641 -12.13307 -12.00698 -11.81315 -11.66146 -11.41760 -11.33785 -11.23153 -10.99495 -10.84681 -10.75389 -10.63618 -10.54788 -10.39441 -10.29379 -10.10014 -9.56919 -9.36639 -8.65204 -8.41900 -7.58823 -6.02327 -4.06343 3.30010 3.37053 3.39350 3.43290 3.88093 4.07163 4.45904 4.65273 4.83954 4.97332 5.10793 5.14855 5.32152 5.32812 5.46609 5.53910 5.54695 5.57815 5.61822 5.67610 5.70435 5.79663 5.91946 5.98823 6.00827 6.04295 6.15308 6.19138 6.23792 6.37524 6.47539 6.48337 6.56131 6.79821 7.10805 7.25549 7.47122 7.61245 7.94866 8.26647 8.49471 8.94459 9.20253 9.58894 11.05702 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.007002 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.192841 B = 3998.162020 C = 4630.439527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.526 3.474 14 O -0.523 6.523 15 C -0.149 4.149 16 H 0.098 0.902 17 C -0.104 4.104 18 H 0.081 0.919 19 C -0.157 4.157 20 C 0.083 3.917 21 H 0.060 0.940 22 C -0.154 4.154 23 O -0.356 6.356 24 C 0.096 3.904 25 H 0.069 0.931 26 C -0.157 4.157 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -7.100 13.450 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.313 3.687 14 O -0.400 6.400 15 C -0.171 4.171 16 H 0.117 0.883 17 C -0.123 4.123 18 H 0.100 0.900 19 C -0.214 4.214 20 C 0.025 3.975 21 H 0.078 0.922 22 C -0.211 4.211 23 O -0.276 6.276 24 C 0.038 3.962 25 H 0.086 0.914 26 C -0.214 4.214 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.247 -6.165 13.282 15.555 hybrid contribution 0.922 -0.636 -0.389 1.186 sum -4.325 -6.801 12.893 15.205 Atomic orbital electron populations 1.22305 0.96980 1.01285 1.02476 1.21396 0.93321 0.84631 1.02450 1.48279 1.63870 1.12857 1.08092 1.19233 0.95628 0.93921 0.78326 1.21461 0.95735 1.32591 1.06134 0.92460 1.24929 0.97953 0.95045 0.96230 1.69943 1.35870 1.34746 1.12904 0.86490 0.85127 0.78028 0.78049 1.19840 1.21049 1.20932 1.19650 0.79048 0.86038 0.84010 1.90677 1.43320 1.19773 1.86191 1.23270 0.97855 1.00397 0.95578 0.88342 1.22430 0.95487 0.98572 0.95787 0.90032 1.22126 0.95221 1.04568 0.99508 1.22638 0.88890 0.89821 0.96114 0.92224 1.22033 0.94807 1.00106 1.04114 1.88933 1.29712 1.31861 1.77063 1.22866 0.90001 0.90806 0.92500 0.91352 1.21937 0.99195 1.00474 0.99826 0.92275 0.92900 0.92043 0.89913 0.92036 0.95248 0.94097 0.92859 0.92640 0.92546 0.89509 0.90117 0.92790 0.91736 0.89789 0.91615 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.89 37.16 0.37 -1.87 16 2 C 0.11 1.68 5.71 -4.04 -0.02 1.66 16 3 N -0.60 -12.31 2.46 -175.06 -0.43 -12.75 16 4 C 0.25 6.39 5.11 -5.20 -0.03 6.36 16 5 C -0.52 -14.57 9.39 -34.44 -0.32 -14.89 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.53 10.57 3.77 -10.98 -0.04 10.53 16 14 O -0.52 -12.77 13.44 2.45 0.03 -12.73 16 15 C -0.15 -2.29 2.46 -89.64 -0.22 -2.51 16 16 H 0.10 1.28 5.09 -51.93 -0.26 1.01 16 17 C -0.10 -1.46 3.56 -89.09 -0.32 -1.78 16 18 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.16 -2.51 7.02 37.15 0.26 -2.25 16 20 C 0.08 1.21 4.06 -26.16 -0.11 1.10 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.15 -2.24 8.40 37.16 0.31 -1.92 16 23 O -0.36 -6.09 10.45 -38.33 -0.40 -6.49 16 24 C 0.10 1.43 3.69 -25.55 -0.09 1.34 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 C -0.16 -2.39 9.03 37.16 0.34 -2.06 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.66 6.65 -51.93 -0.35 0.31 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 31 H 0.06 0.84 6.61 -51.93 -0.34 0.50 16 32 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.05 0.74 7.11 -51.93 -0.37 0.38 16 36 H 0.06 0.94 8.11 -51.93 -0.42 0.51 16 37 H 0.09 1.72 4.59 -51.93 -0.24 1.48 16 38 H 0.08 1.44 6.54 -51.93 -0.34 1.10 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.79 7.01 -51.93 -0.36 0.43 16 41 H 0.08 1.60 6.13 -51.92 -0.32 1.29 16 42 H 0.06 0.88 7.61 -51.93 -0.39 0.49 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -32.23 330.20 -7.21 -39.44 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.13 Total: 1.20 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.03 Total: -4.67 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.31 Total: -38.60 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.37 Total: -19.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.23 -7.21 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249822383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.698 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds