Wall clock time and date at job start Mon Mar 30 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46972 * 2 1 4 4 C 1.46490 * 120.00195 * 266.00999 * 3 2 1 5 5 C 1.50705 * 109.47204 * 269.99990 * 4 3 2 6 6 H 1.07998 * 119.99810 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00080 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99863 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99907 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47177 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47357 * 119.99488 * 9 7 5 12 12 H 1.48500 * 109.47330 * 239.99995 * 9 7 5 13 13 C 1.34776 * 119.99529 * 86.01000 * 3 2 1 14 14 O 1.21283 * 119.99987 * 175.18385 * 13 3 2 15 15 C 1.50705 * 120.00258 * 355.18772 * 13 3 2 16 16 H 1.08998 * 110.83293 * 351.30678 * 15 13 3 17 17 C 1.54814 * 110.90608 * 114.95257 * 15 13 3 18 18 H 1.09002 * 110.48439 * 216.12460 * 17 15 13 19 19 C 1.52992 * 110.48871 * 338.64162 * 17 15 13 20 20 C 1.54103 * 104.30452 * 97.38536 * 17 15 13 21 21 H 1.09003 * 109.87676 * 117.32467 * 20 17 15 22 22 C 1.52999 * 109.87793 * 238.48000 * 20 17 15 23 23 O 1.43748 * 107.29398 * 357.90091 * 20 17 15 24 24 C 1.44381 * 106.97251 * 26.51636 * 23 20 17 25 25 H 1.08993 * 110.62175 * 78.43900 * 24 23 20 26 26 C 1.53003 * 110.61647 * 201.43630 * 24 23 20 27 27 H 1.09001 * 109.46875 * 184.97741 * 1 2 3 28 28 H 1.08999 * 109.47120 * 304.97469 * 1 2 3 29 29 H 1.08998 * 109.47281 * 64.97655 * 1 2 3 30 30 H 1.08997 * 109.47087 * 240.00544 * 2 1 3 31 31 H 1.09004 * 109.46874 * 120.00364 * 2 1 3 32 32 H 1.08997 * 109.47623 * 30.00101 * 4 3 2 33 33 H 1.09001 * 109.47098 * 150.00291 * 4 3 2 34 34 H 0.97003 * 119.99295 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47131 * 181.38905 * 19 17 15 36 36 H 1.09001 * 109.47553 * 301.39331 * 19 17 15 37 37 H 1.09005 * 109.47457 * 61.39431 * 19 17 15 38 38 H 1.08993 * 109.47571 * 60.00092 * 22 20 17 39 39 H 1.08999 * 109.46679 * 180.02562 * 22 20 17 40 40 H 1.08998 * 109.46634 * 299.99583 * 22 20 17 41 41 H 1.09008 * 109.47146 * 53.48621 * 26 24 23 42 42 H 1.09000 * 109.47338 * 173.48222 * 26 24 23 43 43 H 1.09003 * 109.47351 * 293.48737 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3457 2.0424 -1.2655 5 6 3.7944 1.7968 -1.6007 6 1 4.4095 1.2067 -0.9375 7 6 4.3344 2.3253 -2.7539 8 7 3.5852 3.0433 -3.5618 9 14 6.1298 2.0201 -3.1697 10 1 6.7495 1.1880 -2.1071 11 1 6.2230 1.3114 -4.4713 12 1 6.8445 3.3186 -3.2606 13 6 2.1664 2.0436 1.1644 14 8 2.6524 3.1548 1.1725 15 6 1.7281 1.4035 2.4565 16 1 1.1784 0.4818 2.2655 17 6 2.9408 1.1417 3.3825 18 1 2.8063 0.2106 3.9331 19 6 4.2361 1.0994 2.5695 20 6 2.9489 2.3428 4.3479 21 1 2.7929 1.9978 5.3701 22 6 4.2829 3.0847 4.2441 23 8 1.8739 3.2131 3.9563 24 6 0.8822 2.3909 3.3044 25 1 0.2877 1.8500 4.0406 26 6 -0.0162 3.2419 2.4046 27 1 -0.3633 -1.0238 0.0892 28 1 -0.3633 0.5891 0.8421 29 1 -0.3634 0.4347 -0.9312 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7160 1.6404 -2.0592 33 1 2.1714 3.1143 -1.1712 34 1 3.9651 3.4148 -4.3733 35 1 5.0750 0.8899 3.2332 36 1 4.1659 0.3163 1.8145 37 1 4.3905 2.0618 2.0815 38 1 4.4214 3.4424 3.2239 39 1 4.2816 3.9321 4.9296 40 1 5.0963 2.4078 4.5053 41 1 0.6014 3.8216 1.7183 42 1 -0.6802 2.5919 1.8349 43 1 -0.6096 3.9188 3.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249822383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:40 Heat of formation + Delta-G solvation = -106.311079 kcal Electronic energy + Delta-G solvation = -22931.858413 eV Core-core repulsion = 19783.233261 eV Total energy + Delta-G solvation = -3148.625153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.91193 -39.41588 -36.81020 -35.06969 -34.91475 -33.52661 -31.55756 -30.03279 -29.14208 -27.91195 -25.72452 -24.52996 -24.12741 -22.46963 -20.66676 -19.52697 -18.76059 -18.43499 -17.35188 -16.92428 -16.62818 -16.21857 -15.80365 -15.54700 -14.92754 -14.81456 -14.56764 -14.19241 -13.96681 -13.70143 -13.49856 -13.39249 -13.24921 -13.15763 -12.91596 -12.72295 -12.69049 -12.55027 -12.51799 -12.22473 -12.08108 -11.89221 -11.79226 -11.67035 -11.58673 -11.44686 -10.64973 -10.50038 -10.24301 -9.33375 -8.21626 -6.35613 1.33136 1.35900 1.47189 1.91655 2.30988 2.47158 2.90203 3.07418 3.47345 3.60442 3.83941 3.99151 4.02161 4.16629 4.34186 4.38378 4.42136 4.43442 4.47055 4.54094 4.60118 4.67853 4.73790 4.84315 4.86295 4.91547 4.99257 5.02298 5.04988 5.10984 5.20518 5.25043 5.25960 5.31536 5.42892 5.53670 5.61529 5.92289 6.09312 6.16275 6.73262 6.91355 7.31141 7.65547 8.85125 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.007002 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.192841 B = 3998.162020 C = 4630.439527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.607 5.607 4 C 0.267 3.733 5 C -0.532 4.532 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.523 3.477 14 O -0.578 6.578 15 C -0.144 4.144 16 H 0.133 0.867 17 C -0.099 4.099 18 H 0.131 0.869 19 C -0.154 4.154 20 C 0.077 3.923 21 H 0.098 0.902 22 C -0.152 4.152 23 O -0.390 6.390 24 C 0.095 3.905 25 H 0.116 0.884 26 C -0.156 4.156 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.018 0.982 33 H -0.009 1.009 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.032 0.968 42 H 0.083 0.917 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 -10.145 15.979 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.145 3.855 5 C -0.571 4.571 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.312 3.688 14 O -0.457 6.457 15 C -0.165 4.165 16 H 0.151 0.849 17 C -0.118 4.118 18 H 0.149 0.851 19 C -0.211 4.211 20 C 0.020 3.980 21 H 0.116 0.884 22 C -0.209 4.209 23 O -0.310 6.310 24 C 0.037 3.963 25 H 0.133 0.867 26 C -0.214 4.214 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.036 0.964 33 H 0.009 0.991 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.624 -9.255 15.826 19.177 hybrid contribution 1.023 0.365 -1.182 1.605 sum -4.601 -8.890 14.644 17.738 Atomic orbital electron populations 1.22239 0.94395 1.03709 1.01845 1.21720 0.95429 0.81794 1.03457 1.48291 1.64215 1.14749 1.06553 1.18608 0.94617 0.91482 0.80769 1.21712 0.96768 1.32449 1.06126 0.92982 1.25839 1.02600 0.94702 0.96161 1.70063 1.37922 1.35623 1.13421 0.85433 0.79419 0.77919 0.78445 1.19054 1.19381 1.21030 1.20556 0.77659 0.85346 0.85271 1.90656 1.45550 1.22444 1.87080 1.23322 0.99179 1.01385 0.92626 0.84939 1.22572 0.93327 1.00603 0.95271 0.85142 1.22045 0.97788 1.01425 0.99841 1.22892 0.87727 0.89418 0.97960 0.88423 1.22021 0.96560 1.00998 1.01341 1.88911 1.30918 1.33753 1.77418 1.23137 0.89740 0.90405 0.93009 0.86670 1.21922 0.99063 1.00850 0.99522 0.88432 0.91909 0.94134 0.91172 0.88761 0.96450 0.99115 0.92574 0.90124 0.93561 0.94275 0.94616 0.92482 0.89344 0.94868 0.89865 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.89 71.98 0.71 -3.13 16 2 C 0.10 2.97 5.71 86.38 0.49 3.46 16 3 N -0.61 -25.59 2.46 -826.15 -2.03 -27.62 16 4 C 0.27 14.62 5.11 85.64 0.44 15.06 16 5 C -0.53 -31.08 9.39 25.60 0.24 -30.84 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 C 0.52 21.43 3.77 87.66 0.33 21.76 16 14 O -0.58 -30.17 13.44 -0.07 0.00 -30.17 16 15 C -0.14 -4.03 2.46 -10.16 -0.02 -4.05 16 16 H 0.13 2.76 5.09 -2.39 -0.01 2.75 16 17 C -0.10 -2.44 3.56 -9.80 -0.03 -2.47 16 18 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 19 C -0.15 -4.72 7.02 71.98 0.51 -4.21 16 20 C 0.08 2.01 4.06 30.97 0.13 2.14 16 21 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 22 C -0.15 -4.34 8.40 71.98 0.60 -3.73 16 23 O -0.39 -12.76 10.45 -146.01 -1.53 -14.29 16 24 C 0.09 2.54 3.69 31.36 0.12 2.66 16 25 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 26 C -0.16 -4.66 9.03 71.98 0.65 -4.01 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.35 6.65 -2.39 -0.02 1.34 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 31 H 0.09 2.23 6.61 -2.38 -0.02 2.21 16 32 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 33 H -0.01 -0.59 7.49 -2.39 -0.02 -0.61 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.08 1.98 7.11 -2.39 -0.02 1.97 16 36 H 0.05 1.47 8.11 -2.39 -0.02 1.45 16 37 H 0.04 1.59 4.59 -2.38 -0.01 1.58 16 38 H 0.03 1.34 6.54 -2.39 -0.02 1.32 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 2.00 7.01 -2.39 -0.02 1.99 16 41 H 0.03 1.32 6.13 -2.38 -0.01 1.31 16 42 H 0.08 2.11 7.61 -2.39 -0.02 2.09 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -77.72 330.20 4.34 -73.38 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.98 Total: 14.53 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.62 Total: -6.59 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -1.75 Total: -84.77 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.53 Total: -44.46 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -77.72 4.34 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249822383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.936 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds