Wall clock time and date at job start Mon Mar 30 2020 00:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47151 * 2 1 4 4 C 1.50703 * 109.46947 * 239.99807 * 2 1 3 5 5 H 1.08007 * 119.99302 * 275.00774 * 4 2 1 6 6 C 1.37873 * 120.00263 * 95.00604 * 4 2 1 7 7 N 1.31511 * 120.00110 * 184.91486 * 6 4 2 8 8 Si 1.86806 * 119.99674 * 4.91359 * 6 4 2 9 9 H 1.48506 * 109.46877 * 84.83883 * 8 6 4 10 10 H 1.48498 * 109.46837 * 204.83463 * 8 6 4 11 11 H 1.48493 * 109.47335 * 324.83629 * 8 6 4 12 12 N 1.46503 * 109.46862 * 120.00040 * 2 1 3 13 13 C 1.46492 * 120.00141 * 59.99585 * 12 2 1 14 14 C 1.34777 * 119.99838 * 239.99838 * 12 2 1 15 15 O 1.21286 * 120.00000 * 0.02562 * 14 12 2 16 16 C 1.50693 * 120.00265 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47384 * 179.97438 * 16 14 12 18 18 O 1.42901 * 109.47282 * 299.99704 * 17 16 14 19 19 C 1.53004 * 109.46975 * 179.97438 * 17 16 14 20 20 C 1.53006 * 109.46845 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46938 * 59.99968 * 20 19 17 22 22 C 1.52994 * 109.47384 * 299.99700 * 21 20 19 23 23 C 1.52999 * 109.47054 * 60.00214 * 17 16 14 24 24 H 1.09002 * 109.46778 * 54.97773 * 1 2 3 25 25 H 1.08992 * 109.47340 * 174.97808 * 1 2 3 26 26 H 1.09004 * 109.46857 * 294.98347 * 1 2 3 27 27 H 0.97002 * 119.99959 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.47612 * 270.00291 * 13 12 2 29 29 H 1.09007 * 109.47252 * 30.00106 * 13 12 2 30 30 H 1.09001 * 109.47398 * 150.00070 * 13 12 2 31 31 H 1.09000 * 109.47033 * 59.99321 * 16 14 12 32 32 H 1.09005 * 109.46850 * 300.00356 * 16 14 12 33 33 H 0.96700 * 113.99453 * 59.99606 * 18 17 16 34 34 H 1.09000 * 109.47163 * 299.99780 * 19 17 16 35 35 H 1.08995 * 109.47286 * 59.99960 * 19 17 16 36 36 H 1.08997 * 109.46960 * 179.97438 * 20 19 17 37 37 H 1.09000 * 109.47061 * 299.99843 * 20 19 17 38 38 H 1.09008 * 109.46551 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47346 * 60.00050 * 21 20 19 40 40 H 1.09000 * 109.47165 * 300.00461 * 22 21 20 41 41 H 1.08995 * 109.47291 * 180.02562 * 22 21 20 42 42 H 1.09007 * 109.46828 * 299.99751 * 23 17 16 43 43 H 1.09000 * 109.47519 * 59.99954 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1353 -1.7856 -1.2289 6 6 2.3604 0.0119 -2.3580 7 7 2.7060 -0.6134 -3.4621 8 14 2.3137 1.8790 -2.3174 9 1 3.5995 2.3946 -1.7822 10 1 2.1060 2.3989 -3.6928 11 1 1.1989 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2960 -0.7461 3.3135 17 6 4.1464 0.2154 4.1461 18 8 5.2576 0.6644 3.3678 19 6 4.6563 -0.5059 5.3954 20 6 5.5073 0.4555 6.2276 21 6 4.6582 1.6583 6.6439 22 6 4.1483 2.3795 5.3947 23 6 3.2966 1.4175 4.5630 24 1 -0.3633 0.5898 -0.8416 25 1 -0.3633 -1.0236 -0.0900 26 1 -0.3633 0.4341 0.9316 27 1 2.9364 -0.1051 -4.2556 28 1 0.7374 -2.1443 1.9994 29 1 1.5294 -2.5969 0.4709 30 1 2.4627 -2.5819 1.9865 31 1 3.9016 -1.6023 3.0166 32 1 2.4483 -1.0891 3.9069 33 1 5.0079 1.1316 2.5588 34 1 3.8085 -0.8480 5.9889 35 1 5.2615 -1.3625 5.0988 36 1 5.8702 -0.0582 7.1178 37 1 6.3551 0.7972 5.6339 38 1 5.2644 2.3430 7.2372 39 1 3.8104 1.3166 7.2376 40 1 4.9962 2.7213 4.8009 41 1 3.5439 3.2366 5.6912 42 1 2.9330 1.9314 3.6731 43 1 2.4491 1.0750 5.1566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304297755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:44 Heat of formation + Delta-G solvation = -108.865589 kcal Electronic energy + Delta-G solvation = -22275.913698 eV Core-core repulsion = 19127.177774 eV Total energy + Delta-G solvation = -3148.735924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.19404 -38.31132 -35.60347 -34.61742 -32.84731 -31.59280 -30.66314 -30.17340 -27.01004 -26.17790 -25.28152 -22.68408 -22.00402 -20.55858 -19.58893 -18.32863 -17.28829 -16.44101 -15.97669 -15.59735 -15.32717 -15.06555 -14.44426 -14.17316 -13.85940 -13.32583 -13.10961 -12.73133 -12.59532 -12.47378 -12.38309 -12.23705 -11.97205 -11.84903 -11.56639 -11.38608 -11.31141 -11.09229 -10.92630 -10.76039 -10.62818 -10.48189 -10.39640 -10.07541 -9.82382 -9.43615 -9.31852 -8.90451 -8.64263 -7.74374 -6.20520 -4.23255 3.18811 3.28728 3.35908 3.42187 3.77426 4.34932 4.46368 4.76225 4.79908 4.92504 5.08776 5.15734 5.21246 5.32042 5.42797 5.54306 5.60025 5.61850 5.68263 5.73859 5.81365 5.89936 5.92768 6.03076 6.15146 6.21650 6.24286 6.27643 6.31242 6.33809 6.35308 6.53844 6.56186 6.64451 6.88511 7.02439 7.41006 7.58551 8.05120 8.13332 8.45777 8.79650 8.86192 9.41678 10.91319 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.005383 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.548004 B = 5200.040292 C = 5513.843429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.221 3.779 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.876 3.124 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.584 5.584 13 C 0.080 3.920 14 C 0.508 3.492 15 O -0.562 6.562 16 C -0.171 4.171 17 C 0.157 3.843 18 O -0.564 6.564 19 C -0.104 4.104 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.157 4.157 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.267 0.733 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.388 0.612 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 -0.030 17.739 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.121 3.879 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.703 3.297 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.314 5.314 13 C -0.063 4.063 14 C 0.297 3.703 15 O -0.444 6.444 16 C -0.211 4.211 17 C 0.115 3.885 18 O -0.375 6.375 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.150 4.150 23 C -0.194 4.194 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.241 0.759 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.809 0.297 17.867 17.888 hybrid contribution -0.456 0.909 -0.642 1.203 sum 0.354 1.206 17.225 17.271 Atomic orbital electron populations 1.22212 0.98346 1.00872 0.99066 1.19331 0.90788 0.94980 0.82848 0.91683 1.21104 1.44879 0.95646 0.94861 0.90433 1.24958 0.93697 0.98548 0.95193 1.69886 1.45024 1.36128 1.01703 0.86875 0.79854 0.85996 0.76976 1.19566 1.21408 1.18914 1.48358 1.48622 1.11686 1.22736 1.21662 0.98964 0.83071 1.02633 1.20457 0.78674 0.86904 0.84290 1.90467 1.59427 1.17422 1.77075 1.22492 1.01510 1.00851 0.96248 1.20726 0.85911 0.92016 0.89838 1.86319 1.33050 1.78017 1.40117 1.21518 0.99891 0.98109 0.94646 1.21428 0.98884 0.95972 0.98853 1.21550 0.99226 0.97287 0.97542 1.21421 0.99867 0.97547 0.96152 1.22470 0.97885 0.97296 1.01795 0.92625 0.93189 0.95582 0.92337 0.93772 0.89892 0.92355 0.88548 0.88923 0.75850 0.91138 0.91477 0.92578 0.91029 0.92524 0.92556 0.91406 0.92694 0.88472 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.10 37.16 0.34 -2.68 16 2 C 0.22 5.17 2.30 -69.08 -0.16 5.02 16 3 H 0.07 1.67 4.05 -51.93 -0.21 1.46 16 4 C -0.53 -14.21 8.72 -34.44 -0.30 -14.51 16 5 H 0.08 2.22 6.82 -52.48 -0.36 1.86 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 8 Si 0.88 21.91 26.99 -169.99 -4.59 17.32 16 9 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.39 6.82 56.52 0.39 -6.00 16 12 N -0.58 -11.63 2.75 -175.26 -0.48 -12.11 16 13 C 0.08 1.27 9.39 59.84 0.56 1.83 16 14 C 0.51 9.62 7.18 -10.99 -0.08 9.55 16 15 O -0.56 -12.10 11.02 -12.70 -0.14 -12.24 16 16 C -0.17 -2.44 3.53 -27.89 -0.10 -2.54 16 17 C 0.16 2.21 0.68 -90.62 -0.06 2.15 16 18 O -0.56 -9.42 11.60 -53.48 -0.62 -10.04 16 19 C -0.10 -1.21 4.95 -26.73 -0.13 -1.34 16 20 C -0.11 -1.26 5.78 -26.73 -0.15 -1.42 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.11 -1.42 5.78 -26.70 -0.15 -1.57 16 23 C -0.16 -2.21 4.60 -26.70 -0.12 -2.33 16 24 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.44 6.56 -51.93 -0.34 1.10 16 30 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 31 H 0.10 1.32 7.40 -51.93 -0.38 0.93 16 32 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.39 7.05 6.54 45.56 0.30 7.35 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 38 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.64 5.51 -51.93 -0.29 1.36 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -30.37 325.11 -7.40 -37.77 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.62 Total: 7.25 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.62 Total: -7.11 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.29 Total: -37.85 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.76 Total: -22.28 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.37 -7.40 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304297755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.096 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds