Wall clock time and date at job start Mon Mar 30 2020 00:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09008 * 109.47193 * 2 1 4 4 C 1.50699 * 109.47603 * 120.00204 * 2 1 3 5 5 H 1.07993 * 120.00276 * 120.00232 * 4 2 1 6 6 C 1.37883 * 119.99642 * 300.00002 * 4 2 1 7 7 N 1.31515 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99656 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47177 * 60.00459 * 8 6 4 10 10 H 1.48503 * 109.47101 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47328 * 300.00194 * 8 6 4 12 12 N 1.46497 * 109.47414 * 240.00255 * 2 1 3 13 13 C 1.46497 * 120.00141 * 300.00112 * 12 2 1 14 14 C 1.34787 * 120.00306 * 119.99402 * 12 2 1 15 15 O 1.21280 * 119.99549 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00196 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47078 * 180.02562 * 16 14 12 18 18 O 1.42898 * 109.47319 * 299.99900 * 17 16 14 19 19 C 1.53002 * 109.46817 * 179.97438 * 17 16 14 20 20 C 1.52997 * 109.46817 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.47127 * 60.00361 * 20 19 17 22 22 C 1.52999 * 109.46626 * 299.99539 * 21 20 19 23 23 C 1.52996 * 109.47131 * 60.00341 * 17 16 14 24 24 H 1.09008 * 109.47193 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47541 * 299.99399 * 1 2 3 26 26 H 1.08998 * 109.47497 * 59.99734 * 1 2 3 27 27 H 0.96998 * 119.99258 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47015 * 269.99717 * 13 12 2 29 29 H 1.09004 * 109.46935 * 29.99619 * 13 12 2 30 30 H 1.08996 * 109.47743 * 149.99469 * 13 12 2 31 31 H 1.09002 * 109.46959 * 60.00232 * 16 14 12 32 32 H 1.09000 * 109.46670 * 300.00440 * 16 14 12 33 33 H 0.96708 * 113.99549 * 59.99770 * 18 17 16 34 34 H 1.09002 * 109.47070 * 60.00180 * 19 17 16 35 35 H 1.08996 * 109.47407 * 299.99780 * 19 17 16 36 36 H 1.09001 * 109.47502 * 300.00518 * 20 19 17 37 37 H 1.09001 * 109.47289 * 180.02562 * 20 19 17 38 38 H 1.08993 * 109.46955 * 60.00011 * 21 20 19 39 39 H 1.09000 * 109.47050 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.46719 * 180.02562 * 22 21 20 41 41 H 1.08993 * 109.47839 * 299.99931 * 22 21 20 42 42 H 1.09001 * 109.46993 * 300.00131 * 23 17 16 43 43 H 1.09000 * 109.47380 * 59.99237 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.8065 -1.1208 4.0080 10 1 1.8261 -0.4207 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0354 -2.0834 15 8 3.0864 1.1256 -1.8912 16 6 3.2950 -0.7456 -3.3142 17 6 4.1455 0.2159 -4.1466 18 8 3.3523 1.3392 -4.5351 19 6 4.6556 -0.5054 -5.3958 20 6 5.5066 0.4559 -6.2279 21 6 6.6967 0.9356 -5.3944 22 6 6.1865 1.6569 -4.1452 23 6 5.3358 0.6956 -3.3136 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7082 1.1607 3.4844 28 1 2.4158 -2.7376 -0.9718 29 1 0.6904 -2.3001 -0.9847 30 1 1.6237 -2.2851 -2.5002 31 1 2.4470 -1.0878 -3.9074 32 1 3.9004 -1.6022 -3.0178 33 1 2.9952 1.8444 -3.7918 34 1 3.8079 -0.8476 -5.9894 35 1 5.2608 -1.3620 -5.0992 36 1 4.9019 1.3129 -6.5246 37 1 5.8697 -0.0577 -7.1181 38 1 7.3014 0.0788 -5.0978 39 1 7.3032 1.6202 -5.9874 40 1 7.0343 1.9991 -3.5516 41 1 5.5818 2.5138 -4.4418 42 1 4.9728 1.2093 -2.4234 43 1 5.9409 -0.1612 -3.0173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304297756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:46 Heat of formation + Delta-G solvation = -108.853522 kcal Electronic energy + Delta-G solvation = -22139.407241 eV Core-core repulsion = 18990.671839 eV Total energy + Delta-G solvation = -3148.735401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12152 -38.21435 -35.50315 -34.58608 -32.98301 -31.44263 -30.60527 -29.45121 -26.89239 -26.08761 -25.22232 -22.63092 -21.97547 -20.61046 -19.55913 -18.30879 -16.67704 -16.41364 -15.95526 -15.41738 -15.17740 -15.00075 -14.51281 -14.23351 -13.80837 -13.34095 -13.09879 -12.72882 -12.57412 -12.42709 -12.19167 -11.90607 -11.66688 -11.57350 -11.40495 -11.34115 -11.09045 -10.90831 -10.84584 -10.71499 -10.58849 -10.38543 -10.26744 -10.19229 -9.98082 -9.40620 -9.21271 -8.81011 -8.44795 -7.64404 -6.09955 -4.18230 3.25453 3.27395 3.31183 3.34135 3.89646 4.37079 4.49284 4.80864 4.85751 4.96906 5.16386 5.20321 5.21680 5.35570 5.47384 5.57500 5.64915 5.68722 5.74465 5.77224 5.84472 5.93050 6.03374 6.07243 6.20550 6.25951 6.29945 6.31548 6.38272 6.61700 6.71913 6.74924 6.79161 7.02159 7.37909 7.47883 7.68024 7.97380 8.10443 8.17743 8.48747 8.79320 8.99485 9.48393 10.95215 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.004724 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.170664 B = 5925.912814 C = 6177.777694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.085 3.915 14 C 0.507 3.493 15 O -0.557 6.557 16 C -0.171 4.171 17 C 0.158 3.842 18 O -0.565 6.565 19 C -0.104 4.104 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.158 4.158 24 H 0.029 0.971 25 H 0.094 0.906 26 H 0.011 0.989 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.387 0.613 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 -4.336 -13.761 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.059 4.059 14 C 0.295 3.705 15 O -0.439 6.439 16 C -0.212 4.212 17 C 0.116 3.884 18 O -0.376 6.376 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.195 4.195 24 H 0.049 0.951 25 H 0.112 0.888 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.240 0.760 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.135 -3.835 -14.057 15.809 hybrid contribution 0.106 -0.615 1.580 1.699 sum 6.241 -4.450 -12.476 14.643 Atomic orbital electron populations 1.22097 0.98250 0.99348 1.00892 1.18955 0.90863 0.94549 0.79974 0.91780 1.21266 1.31943 1.13001 0.90322 0.92428 1.24889 0.94924 0.94966 0.98954 1.69867 1.36217 1.22580 1.23885 0.86556 0.79228 0.79584 0.82016 1.20264 1.21137 1.20247 1.48275 1.48396 1.11690 1.23547 1.21582 1.01689 0.83181 0.99452 1.20380 0.78847 0.87129 0.84128 1.90476 1.58696 1.17443 1.77249 1.22494 1.01654 1.00639 0.96365 1.20715 0.89366 0.85675 0.92610 1.86305 1.69736 1.42571 1.39017 1.21520 0.99387 0.97633 0.95630 1.21424 0.96662 0.99647 0.97354 1.21554 0.97338 0.99819 0.96934 1.21399 0.98898 0.98810 0.95830 1.22449 0.96558 1.00016 1.00488 0.95149 0.88774 0.96953 0.92610 0.93241 0.90797 0.92846 0.88920 0.88906 0.75955 0.91604 0.91119 0.91093 0.92637 0.92535 0.92544 0.92622 0.91467 0.88242 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 37.15 0.33 -3.15 16 2 C 0.26 6.42 2.64 -69.09 -0.18 6.23 16 3 H 0.06 1.85 6.90 -51.92 -0.36 1.49 16 4 C -0.53 -14.05 8.37 -34.44 -0.29 -14.34 16 5 H 0.06 1.52 7.65 -52.49 -0.40 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.59 -12.14 2.75 -175.27 -0.48 -12.62 16 13 C 0.08 1.39 9.48 59.85 0.57 1.96 16 14 C 0.51 9.85 7.18 -10.98 -0.08 9.77 16 15 O -0.56 -12.33 11.02 -12.71 -0.14 -12.47 16 16 C -0.17 -2.50 3.53 -27.88 -0.10 -2.60 16 17 C 0.16 2.26 0.68 -90.62 -0.06 2.20 16 18 O -0.57 -9.15 11.61 -53.50 -0.62 -9.77 16 19 C -0.10 -1.22 4.94 -26.73 -0.13 -1.36 16 20 C -0.11 -1.27 5.78 -26.73 -0.15 -1.43 16 21 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 22 C -0.11 -1.48 5.78 -26.76 -0.15 -1.63 16 23 C -0.16 -2.36 4.60 -26.76 -0.12 -2.48 16 24 H 0.03 0.66 6.66 -51.92 -0.35 0.31 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 30 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 31 H 0.09 1.22 7.40 -51.93 -0.38 0.84 16 32 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 33 H 0.39 6.75 6.54 45.56 0.30 7.05 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 42 H 0.10 1.81 5.51 -51.93 -0.29 1.53 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -28.97 325.36 -7.98 -36.95 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.62 Total: 8.02 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.63 Total: -6.63 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.14 Total: -36.86 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.76 Total: -22.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.97 -7.98 -36.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304297756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.900 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds