Wall clock time and date at job start Mon Mar 30 2020 00:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09008 * 109.47193 * 2 1 4 4 C 1.50699 * 109.47603 * 120.00204 * 2 1 3 5 5 H 1.07993 * 120.00276 * 120.00232 * 4 2 1 6 6 C 1.37883 * 119.99642 * 300.00002 * 4 2 1 7 7 N 1.31515 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99656 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47177 * 60.00459 * 8 6 4 10 10 H 1.48503 * 109.47101 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47328 * 300.00194 * 8 6 4 12 12 N 1.46497 * 109.47414 * 240.00255 * 2 1 3 13 13 C 1.46497 * 120.00141 * 300.00112 * 12 2 1 14 14 C 1.34787 * 120.00306 * 119.99402 * 12 2 1 15 15 O 1.21280 * 119.99549 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00196 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47078 * 180.02562 * 16 14 12 18 18 O 1.42898 * 109.47319 * 299.99900 * 17 16 14 19 19 C 1.53002 * 109.46817 * 179.97438 * 17 16 14 20 20 C 1.52997 * 109.46817 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.47127 * 60.00361 * 20 19 17 22 22 C 1.52999 * 109.46626 * 299.99539 * 21 20 19 23 23 C 1.52996 * 109.47131 * 60.00341 * 17 16 14 24 24 H 1.09008 * 109.47193 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47541 * 299.99399 * 1 2 3 26 26 H 1.08998 * 109.47497 * 59.99734 * 1 2 3 27 27 H 0.96998 * 119.99258 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47015 * 269.99717 * 13 12 2 29 29 H 1.09004 * 109.46935 * 29.99619 * 13 12 2 30 30 H 1.08996 * 109.47743 * 149.99469 * 13 12 2 31 31 H 1.09002 * 109.46959 * 60.00232 * 16 14 12 32 32 H 1.09000 * 109.46670 * 300.00440 * 16 14 12 33 33 H 0.96708 * 113.99549 * 59.99770 * 18 17 16 34 34 H 1.09002 * 109.47070 * 60.00180 * 19 17 16 35 35 H 1.08996 * 109.47407 * 299.99780 * 19 17 16 36 36 H 1.09001 * 109.47502 * 300.00518 * 20 19 17 37 37 H 1.09001 * 109.47289 * 180.02562 * 20 19 17 38 38 H 1.08993 * 109.46955 * 60.00011 * 21 20 19 39 39 H 1.09000 * 109.47050 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.46719 * 180.02562 * 22 21 20 41 41 H 1.08993 * 109.47839 * 299.99931 * 22 21 20 42 42 H 1.09001 * 109.46993 * 300.00131 * 23 17 16 43 43 H 1.09000 * 109.47380 * 59.99237 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.8065 -1.1208 4.0080 10 1 1.8261 -0.4207 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0354 -2.0834 15 8 3.0864 1.1256 -1.8912 16 6 3.2950 -0.7456 -3.3142 17 6 4.1455 0.2159 -4.1466 18 8 3.3523 1.3392 -4.5351 19 6 4.6556 -0.5054 -5.3958 20 6 5.5066 0.4559 -6.2279 21 6 6.6967 0.9356 -5.3944 22 6 6.1865 1.6569 -4.1452 23 6 5.3358 0.6956 -3.3136 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7082 1.1607 3.4844 28 1 2.4158 -2.7376 -0.9718 29 1 0.6904 -2.3001 -0.9847 30 1 1.6237 -2.2851 -2.5002 31 1 2.4470 -1.0878 -3.9074 32 1 3.9004 -1.6022 -3.0178 33 1 2.9952 1.8444 -3.7918 34 1 3.8079 -0.8476 -5.9894 35 1 5.2608 -1.3620 -5.0992 36 1 4.9019 1.3129 -6.5246 37 1 5.8697 -0.0577 -7.1181 38 1 7.3014 0.0788 -5.0978 39 1 7.3032 1.6202 -5.9874 40 1 7.0343 1.9991 -3.5516 41 1 5.5818 2.5138 -4.4418 42 1 4.9728 1.2093 -2.4234 43 1 5.9409 -0.1612 -3.0173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304297756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:46 Heat of formation + Delta-G solvation = -126.244340 kcal Electronic energy + Delta-G solvation = -22140.161363 eV Core-core repulsion = 18990.671839 eV Total energy + Delta-G solvation = -3149.489524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45636 -39.54746 -37.13471 -35.77734 -34.85405 -32.78342 -31.62576 -31.16066 -28.09776 -27.54337 -27.24048 -23.71080 -23.35713 -22.03765 -20.59812 -19.87317 -18.50579 -17.98138 -17.15681 -17.07909 -16.49582 -16.37579 -16.16156 -15.26551 -15.17196 -14.63441 -14.51296 -14.25191 -13.83167 -13.78283 -13.49933 -13.24632 -13.09171 -13.00929 -12.81658 -12.74184 -12.61999 -12.56611 -12.39593 -12.17783 -12.13578 -11.89763 -11.62041 -11.34577 -11.19212 -11.12817 -10.55852 -10.53977 -10.23823 -9.30771 -8.14898 -6.31539 1.40728 1.42620 1.50103 1.79865 2.31847 2.50265 3.12924 3.37366 3.64792 3.75131 3.92812 4.05798 4.22525 4.31363 4.42494 4.48340 4.59371 4.62162 4.67116 4.69228 4.78616 4.81785 4.85888 4.88466 4.97158 5.04040 5.07269 5.13883 5.19729 5.31994 5.33766 5.39817 5.45568 5.56161 5.62480 5.63260 5.69749 6.03330 6.16263 6.74436 6.78173 6.87264 7.33178 7.50101 8.88880 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.004724 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.170664 B = 5925.912814 C = 6177.777694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.011 0.989 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.263 1.263 12 N -0.600 5.600 13 C 0.081 3.919 14 C 0.496 3.504 15 O -0.593 6.593 16 C -0.158 4.158 17 C 0.151 3.849 18 O -0.574 6.574 19 C -0.101 4.101 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.157 4.157 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.264 0.736 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.378 0.622 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.962 -7.073 -15.285 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.029 0.971 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.187 1.187 12 N -0.330 5.330 13 C -0.061 4.061 14 C 0.286 3.714 15 O -0.477 6.477 16 C -0.198 4.198 17 C 0.110 3.890 18 O -0.383 6.383 19 C -0.139 4.139 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.194 4.194 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.143 -6.608 -15.615 18.399 hybrid contribution -0.182 0.297 2.034 2.064 sum 6.961 -6.311 -13.581 16.514 Atomic orbital electron populations 1.21883 0.97397 1.00006 0.99902 1.18506 0.91451 0.92320 0.81804 0.97064 1.21542 1.31884 1.13014 0.91230 0.92287 1.25723 0.95092 0.95631 1.01992 1.70015 1.37260 1.23902 1.24428 0.85541 0.78388 0.79011 0.78262 1.20306 1.20974 1.18740 1.48273 1.48856 1.13387 1.22478 1.21823 1.01476 0.80524 1.02307 1.21327 0.78012 0.86934 0.85136 1.90481 1.59627 1.19412 1.78179 1.22511 1.02715 1.00743 0.93815 1.20988 0.88713 0.85241 0.94018 1.86306 1.70036 1.43335 1.38657 1.21575 1.00138 0.97971 0.94174 1.21431 0.96277 0.99141 0.98196 1.21537 0.97625 1.00316 0.95715 1.21384 0.98434 0.98166 0.96943 1.22376 0.97350 1.00337 0.99363 0.93494 0.91501 0.96141 0.92690 0.92575 0.91331 0.88647 0.86585 0.86308 0.77093 0.90592 0.88780 0.93011 0.90118 0.91096 0.91357 0.92456 0.93327 0.92363 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.95 71.98 0.64 -5.77 16 2 C 0.26 13.44 2.64 44.24 0.12 13.55 16 3 H 0.01 0.70 6.90 -2.38 -0.02 0.68 16 4 C -0.54 -29.05 8.37 25.60 0.21 -28.84 16 5 H 0.06 3.09 7.65 -2.91 -0.02 3.07 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 8 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 N -0.60 -24.54 2.75 -826.81 -2.28 -26.81 16 13 C 0.08 2.45 9.48 127.77 1.21 3.66 16 14 C 0.50 19.24 7.18 87.66 0.63 19.87 16 15 O -0.59 -27.59 11.02 14.43 0.16 -27.43 16 16 C -0.16 -4.21 3.53 29.85 0.11 -4.11 16 17 C 0.15 4.09 0.68 -10.79 -0.01 4.09 16 18 O -0.57 -18.59 11.61 -131.52 -1.53 -20.11 16 19 C -0.10 -2.01 4.94 30.59 0.15 -1.86 16 20 C -0.11 -2.20 5.78 30.60 0.18 -2.02 16 21 C -0.11 -2.26 5.92 30.60 0.18 -2.08 16 22 C -0.11 -2.90 5.78 30.58 0.18 -2.72 16 23 C -0.16 -4.62 4.60 30.57 0.14 -4.48 16 24 H 0.05 2.04 6.66 -2.38 -0.02 2.03 16 25 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 2.14 6.43 -2.38 -0.02 2.12 16 30 H 0.10 2.06 6.44 -2.39 -0.02 2.04 16 31 H 0.12 2.59 7.40 -2.39 -0.02 2.58 16 32 H 0.12 2.59 8.11 -2.39 -0.02 2.57 16 33 H 0.38 13.82 6.54 -74.05 -0.48 13.34 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.21 7.68 -2.39 -0.02 1.19 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.42 7.68 -2.39 -0.02 1.40 16 42 H 0.06 2.22 5.51 -2.39 -0.01 2.21 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -65.90 325.36 3.32 -62.58 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.50 Total: 28.90 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.19 Total: -9.43 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -2.03 Total: -79.42 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -1.37 Total: -47.55 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -65.90 3.32 -62.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304297756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.666 kcal (2) G-P(sol) polarization free energy of solvation -65.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds