Wall clock time and date at job start Mon Mar 30 2020 01:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.52999 * 109.47524 * 239.99612 * 2 1 3 5 5 O 1.45203 * 109.47101 * 119.99536 * 2 1 3 6 6 C 1.34636 * 116.99909 * 60.00134 * 5 2 1 7 7 O 1.21509 * 120.00106 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00070 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46963 * 299.99499 * 12 11 9 14 14 H 1.09002 * 109.47067 * 300.00341 * 13 12 11 15 15 C 1.50703 * 109.47292 * 180.02562 * 13 12 11 16 16 H 1.07996 * 119.99751 * 240.00190 * 15 13 12 17 17 C 1.37880 * 119.99788 * 60.00122 * 15 13 12 18 18 N 1.31510 * 119.99893 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 119.99568 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47545 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46892 * 120.00078 * 19 17 15 22 22 H 1.48496 * 109.47356 * 239.99680 * 19 17 15 23 23 C 1.52997 * 109.47092 * 60.00194 * 13 12 11 24 24 C 1.53002 * 109.46799 * 205.00309 * 9 8 6 25 25 H 1.09001 * 109.47288 * 299.99905 * 1 2 3 26 26 H 1.08997 * 109.47246 * 60.00117 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47317 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47032 * 299.99708 * 3 2 1 30 30 H 1.08994 * 109.47302 * 59.99740 * 3 2 1 31 31 H 1.09002 * 109.47054 * 300.00242 * 4 2 1 32 32 H 1.08997 * 109.46638 * 59.99899 * 4 2 1 33 33 H 1.08993 * 109.47517 * 179.97438 * 4 2 1 34 34 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47194 * 299.99493 * 11 9 8 36 36 H 1.08992 * 109.47399 * 59.99666 * 11 9 8 37 37 H 1.09000 * 109.47437 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47508 * 59.99571 * 12 11 9 39 39 H 0.96996 * 119.99480 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47375 * 180.02562 * 23 13 12 41 41 H 1.09002 * 109.47497 * 59.99850 * 23 13 12 42 42 H 1.09002 * 109.47075 * 299.99543 * 24 9 8 43 43 H 1.08996 * 109.47407 * 60.00500 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4169 9 6 1.6739 -4.0667 2.5834 10 1 0.6645 -4.2086 2.1972 11 6 2.6452 -4.9645 1.8144 12 6 2.2332 -6.4278 1.9878 13 6 2.2668 -6.7945 3.4728 14 1 3.2761 -6.6528 3.8593 15 6 1.8616 -8.2359 3.6437 16 1 0.9976 -8.4867 4.2409 17 6 2.5942 -9.2344 3.0374 18 7 3.6467 -8.9288 2.3105 19 14 2.0923 -11.0211 3.2498 20 1 0.8830 -11.0970 4.1082 21 1 1.7933 -11.6125 1.9208 22 1 3.2014 -11.7742 3.8884 23 6 1.2956 -5.8966 4.2419 24 6 1.7079 -4.4329 4.0686 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1391 33 1 3.1300 -0.7209 -1.2494 34 1 2.6276 -2.2366 3.0830 35 1 2.6209 -4.7036 0.7563 36 1 3.6545 -4.8226 2.2005 37 1 2.9254 -7.0675 1.4403 38 1 1.2239 -6.5694 1.6013 39 1 4.1617 -9.6313 1.8837 40 1 1.3198 -6.1575 5.3000 41 1 0.2863 -6.0382 3.8555 42 1 2.7173 -4.2911 4.4547 43 1 1.0160 -3.7933 4.6165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306145435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:26 Heat of formation + Delta-G solvation = -129.842635 kcal Electronic energy + Delta-G solvation = -21536.005620 eV Core-core repulsion = 18386.360062 eV Total energy + Delta-G solvation = -3149.645557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82435 -39.76014 -37.89396 -35.84056 -34.99345 -33.87066 -31.44542 -30.44103 -28.33939 -28.25963 -26.65362 -23.91050 -23.36227 -22.09519 -21.23108 -20.42987 -19.05535 -18.38099 -17.66704 -17.11083 -16.73908 -16.36927 -15.72489 -15.39813 -15.11573 -14.81774 -14.66847 -14.45729 -14.07785 -13.61611 -13.31037 -13.12538 -12.98199 -12.94934 -12.87052 -12.82931 -12.69851 -12.50963 -12.36192 -12.20823 -12.14511 -11.95613 -11.81800 -11.35630 -11.20442 -11.09734 -10.84281 -10.62732 -10.37963 -10.02454 -8.05557 -6.18771 1.20902 1.40805 1.43387 1.53998 1.81823 2.45454 3.19578 3.22617 3.78924 3.83011 3.83531 3.98105 4.02730 4.29626 4.52677 4.54450 4.61268 4.63773 4.67161 4.78722 4.78894 4.83158 4.87288 4.90975 4.92020 4.94994 5.12297 5.17692 5.23244 5.31485 5.33479 5.37372 5.44504 5.48606 5.63525 5.64201 5.68745 6.05541 6.19971 6.43757 6.50336 6.94574 7.42053 7.49306 8.98527 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041236 B = 0.003723 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.860658 B = 7519.557085 C = 7780.839284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.368 6.368 6 C 0.644 3.356 7 O -0.595 6.595 8 N -0.695 5.695 9 C 0.176 3.824 10 H 0.070 0.930 11 C -0.114 4.114 12 C -0.098 4.098 13 C 0.043 3.957 14 H 0.002 0.998 15 C -0.532 4.532 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.917 5.917 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.281 1.281 23 C -0.099 4.099 24 C -0.110 4.110 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.416 0.584 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 20.490 -2.034 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.283 6.283 6 C 0.398 3.602 7 O -0.486 6.486 8 N -0.354 5.354 9 C 0.073 3.927 10 H 0.088 0.912 11 C -0.153 4.153 12 C -0.137 4.137 13 C 0.025 3.975 14 H 0.020 0.980 15 C -0.570 4.570 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.557 5.557 19 Si 0.776 3.224 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.207 1.207 23 C -0.137 4.137 24 C -0.148 4.148 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.252 0.748 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.138 20.231 -2.585 20.636 hybrid contribution 0.213 -1.345 -0.023 1.362 sum -2.925 18.886 -2.608 19.288 Atomic orbital electron populations 1.22469 0.93979 1.03528 1.03692 1.22429 0.94671 0.92836 0.81400 1.21872 1.02384 0.90307 1.04448 1.22485 1.01549 1.02118 0.97750 1.86304 1.71649 1.22910 1.47412 1.18296 0.78732 0.80791 0.82392 1.90897 1.42552 1.71125 1.44043 1.44871 1.55041 1.12115 1.23343 1.20858 0.97991 0.76888 0.96998 0.91168 1.21840 0.98917 0.95965 0.98540 1.21377 0.98875 0.93228 1.00187 1.18675 0.94079 0.92987 0.91763 0.98016 1.21673 1.12137 0.92932 1.30247 0.92875 1.25736 0.95083 1.02874 0.95104 1.70022 1.18564 1.33401 1.33716 0.85622 0.78337 0.80671 0.77723 1.19059 1.21039 1.20681 1.21468 0.98982 0.93236 1.00044 1.21747 1.03038 0.97040 0.92950 0.91663 0.88989 0.92396 0.91273 0.87877 0.90924 0.92534 0.88908 0.92135 0.74758 0.94349 0.92513 0.92320 0.95819 0.93237 0.92039 0.93339 0.90645 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 2 C 0.12 2.62 1.13 -10.80 -0.01 2.61 16 3 C -0.13 -1.81 8.85 71.98 0.64 -1.17 16 4 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 5 O -0.37 -9.71 9.94 -55.45 -0.55 -10.26 16 6 C 0.64 20.20 8.02 129.79 1.04 21.24 16 7 O -0.60 -22.18 11.54 19.81 0.23 -21.96 16 8 N -0.69 -19.76 5.08 -570.12 -2.90 -22.66 16 9 C 0.18 5.91 2.45 44.99 0.11 6.02 16 10 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 11 C -0.11 -4.57 5.49 30.59 0.17 -4.40 16 12 C -0.10 -4.75 4.98 30.60 0.15 -4.60 16 13 C 0.04 2.13 2.10 -11.54 -0.02 2.10 16 14 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 15 C -0.53 -29.22 8.56 25.60 0.22 -29.00 16 16 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 17 C 0.01 0.57 5.30 84.66 0.45 1.02 16 18 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 19 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 C -0.10 -3.84 5.15 30.61 0.16 -3.68 16 24 C -0.11 -3.34 5.40 30.61 0.17 -3.17 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.68 5.88 -2.39 -0.01 1.67 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.42 9.28 8.71 -92.71 -0.81 8.48 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -65.22 335.22 3.49 -61.73 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.17 Total: 20.00 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 4.27 Total: -19.67 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -2.65 Total: -75.91 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.32 Total: -32.21 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -65.22 3.49 -61.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306145435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.113 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds