Wall clock time and date at job start Mon Mar 30 2020 00:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46731 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00313 * 2 1 3 5 5 H 1.07999 * 119.99662 * 245.37276 * 4 2 1 6 6 C 1.37875 * 120.00120 * 65.37261 * 4 2 1 7 7 N 1.31515 * 119.99748 * 184.89036 * 6 4 2 8 8 Si 1.86794 * 120.00196 * 5.16703 * 6 4 2 9 9 H 1.48500 * 109.47373 * 269.72603 * 8 6 4 10 10 H 1.48505 * 109.47126 * 29.72474 * 8 6 4 11 11 H 1.48499 * 109.47207 * 149.72425 * 8 6 4 12 12 N 1.46495 * 109.47130 * 120.00222 * 2 1 3 13 13 C 1.34777 * 120.00120 * 274.99902 * 12 2 1 14 14 O 1.21291 * 119.99910 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00409 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.47235 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46895 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.46895 * 179.97438 * 17 16 15 19 19 C 1.53177 * 109.54358 * 294.55318 * 18 17 16 20 20 C 1.53094 * 109.16299 * 183.15497 * 19 18 17 21 21 O 1.42901 * 109.41353 * 57.61079 * 20 19 18 22 22 C 1.42904 * 114.09573 * 298.83970 * 21 20 19 23 23 C 1.53091 * 109.41637 * 61.16222 * 22 21 20 24 24 H 1.09000 * 109.47127 * 54.97478 * 1 2 3 25 25 H 1.08997 * 109.46920 * 174.97504 * 1 2 3 26 26 H 1.09000 * 109.47026 * 294.97471 * 1 2 3 27 27 H 0.97000 * 120.00553 * 355.27176 * 7 6 4 28 28 H 0.96997 * 120.00507 * 94.99817 * 12 2 1 29 29 H 1.09002 * 109.46677 * 300.00341 * 15 13 12 30 30 H 1.09003 * 109.46788 * 60.00127 * 15 13 12 31 31 H 1.09002 * 109.46974 * 299.99665 * 16 15 13 32 32 H 1.08997 * 109.46784 * 60.00191 * 16 15 13 33 33 H 1.09002 * 109.46893 * 299.99540 * 17 16 15 34 34 H 1.08996 * 109.47165 * 59.99638 * 17 16 15 35 35 H 1.08994 * 109.54029 * 54.82642 * 18 17 16 36 36 H 1.09000 * 109.51998 * 303.06462 * 19 18 17 37 37 H 1.08995 * 109.51975 * 63.24643 * 19 18 17 38 38 H 1.08998 * 109.47878 * 297.62772 * 20 19 18 39 39 H 1.08997 * 109.47616 * 177.59063 * 20 19 18 40 40 H 1.08998 * 109.48070 * 301.17715 * 22 21 20 41 41 H 1.08998 * 109.49035 * 181.15204 * 22 21 20 42 42 H 1.08996 * 109.52236 * 182.48157 * 23 22 21 43 43 H 1.09007 * 109.52009 * 62.29582 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1782 -2.4797 7 7 2.1461 -0.8447 -3.5570 8 14 0.9742 1.4929 -2.6418 9 1 -0.4987 1.3176 -2.7140 10 1 1.3161 2.3282 -1.4625 11 1 1.4542 2.1615 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6500 -0.7286 3.5874 16 6 2.7007 0.2543 4.7589 17 6 3.2119 -0.4667 6.0078 18 6 3.2632 0.5164 7.1790 19 6 4.3078 1.5998 6.8933 20 6 4.4082 2.5325 8.1031 21 8 4.7450 1.7703 9.2640 22 6 3.7805 0.7732 9.6072 23 6 3.6548 -0.2303 8.4579 24 1 -0.3633 0.5898 -0.8416 25 1 -0.3633 -1.0237 -0.0900 26 1 -0.3633 0.4339 0.9316 27 1 2.6359 -1.6778 -3.4732 28 1 2.2490 -1.6318 1.1526 29 1 1.9778 -1.5509 3.8324 30 1 3.6493 -1.1203 3.3978 31 1 3.3727 1.0769 4.5141 32 1 1.7012 0.6457 4.9483 33 1 2.5402 -1.2894 6.2527 34 1 4.2114 -0.8577 5.8180 35 1 2.2845 0.9775 7.3112 36 1 5.2760 1.1332 6.7116 37 1 4.0079 2.1724 6.0157 38 1 3.4507 3.0293 8.2595 39 1 5.1806 3.2801 7.9225 40 1 2.8148 1.2470 9.7833 41 1 4.1004 0.2534 10.5102 42 1 2.8880 -0.9663 8.6992 43 1 4.6099 -0.7337 8.3078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330379481.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:16 Heat of formation + Delta-G solvation = -123.359568 kcal Electronic energy + Delta-G solvation = -20568.975942 eV Core-core repulsion = 17419.611512 eV Total energy + Delta-G solvation = -3149.364430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76176 -39.03871 -36.09260 -34.94319 -32.72286 -32.35324 -31.34340 -29.88632 -27.77762 -24.89011 -24.24780 -23.68766 -21.63524 -20.44198 -20.23968 -19.50646 -17.74802 -16.48676 -16.28139 -16.15537 -15.76338 -15.23960 -14.97715 -14.72873 -14.17488 -13.87437 -13.52402 -13.18407 -12.92750 -12.69578 -12.59263 -12.26798 -11.98631 -11.89323 -11.67351 -11.55544 -11.49020 -11.33095 -11.01552 -10.78694 -10.55137 -10.48236 -10.38646 -10.08580 -9.78117 -9.73978 -9.14449 -8.85996 -8.56839 -8.15162 -6.56101 -4.24434 3.28207 3.35443 3.44946 3.58930 3.62018 3.97252 4.40549 4.44595 4.47004 4.59232 4.75175 4.92798 5.04915 5.07513 5.15818 5.19443 5.21141 5.28358 5.41268 5.45642 5.52164 5.54479 5.66463 5.71649 5.76255 5.85154 5.90836 5.92777 6.09540 6.27766 6.35685 6.39151 6.45044 6.61732 6.89885 6.92851 7.27394 7.39208 7.65028 8.21713 8.49365 8.69848 9.00735 9.46487 10.84353 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.002972 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.118984 B = 9419.206701 C = 9647.990845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.234 3.766 3 H 0.047 0.953 4 C -0.609 4.609 5 H 0.061 0.939 6 C 0.034 3.966 7 N -0.906 5.906 8 Si 1.052 2.948 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.705 5.705 13 C 0.499 3.501 14 O -0.560 6.560 15 C -0.142 4.142 16 C -0.103 4.103 17 C -0.113 4.113 18 C -0.090 4.090 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.386 6.386 22 C 0.060 3.940 23 C -0.151 4.151 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.032 0.968 27 H 0.268 0.732 28 H 0.392 0.608 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 0.600 23.677 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.130 3.870 3 H 0.065 0.935 4 C -0.647 4.647 5 H 0.079 0.921 6 C -0.171 4.171 7 N -0.540 5.540 8 Si 0.881 3.119 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.353 5.353 13 C 0.284 3.716 14 O -0.439 6.439 15 C -0.182 4.182 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.108 4.108 19 C -0.192 4.192 20 C -0.017 4.017 21 O -0.305 6.305 22 C -0.017 4.017 23 C -0.189 4.189 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.225 0.775 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.735 2.552 22.671 22.880 hybrid contribution 0.408 -1.866 0.764 2.057 sum 2.143 0.686 23.435 23.543 Atomic orbital electron populations 1.22391 0.99305 1.00756 0.99171 1.19182 0.90270 0.94747 0.82790 0.93498 1.22177 1.40652 1.10668 0.91193 0.92052 1.25718 0.96240 1.03530 0.91635 1.70833 1.36199 1.16776 1.30190 0.83903 0.76407 0.75557 0.76049 1.20824 1.20003 1.21421 1.46299 1.65163 1.13704 1.10097 1.20626 0.78390 0.87584 0.84954 1.90637 1.51609 1.16279 1.85393 1.21689 1.02695 0.99720 0.94093 1.21351 1.02470 0.97851 0.92404 1.21650 1.01487 0.97801 0.94131 1.21204 0.99007 0.96064 0.94534 1.22313 1.00040 0.97956 0.98857 1.22611 1.00853 0.93338 0.84921 1.87919 1.47067 1.49736 1.45791 1.22570 0.92469 0.89377 0.97264 1.22259 1.02567 0.98622 0.95458 0.93212 0.93185 0.94867 0.92188 0.77506 0.89611 0.89506 0.91074 0.91394 0.91890 0.91861 0.90998 0.91013 0.90142 0.93234 0.88925 0.93324 0.89106 0.90930 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.07 37.16 0.34 -3.24 16 2 C 0.23 5.70 2.14 -69.09 -0.15 5.55 16 3 H 0.05 1.26 6.08 -51.93 -0.32 0.94 16 4 C -0.61 -16.66 9.10 -34.44 -0.31 -16.97 16 5 H 0.06 1.75 7.95 -52.49 -0.42 1.33 16 6 C 0.03 0.98 5.43 -17.82 -0.10 0.88 16 7 N -0.91 -27.35 13.70 55.43 0.76 -26.59 16 8 Si 1.05 25.71 25.28 -169.99 -4.30 21.42 16 9 H -0.28 -6.51 6.82 56.52 0.39 -6.12 16 10 H -0.27 -6.53 6.35 56.52 0.36 -6.17 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 N -0.71 -14.29 5.07 -54.93 -0.28 -14.57 16 13 C 0.50 9.41 7.79 -10.98 -0.09 9.32 16 14 O -0.56 -12.62 15.65 5.55 0.09 -12.54 16 15 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 16 C -0.10 -1.24 4.27 -26.73 -0.11 -1.36 16 17 C -0.11 -1.04 4.69 -26.73 -0.13 -1.17 16 18 C -0.09 -0.78 2.27 -90.43 -0.21 -0.99 16 19 C -0.15 -1.41 5.10 -26.59 -0.14 -1.54 16 20 C 0.06 0.53 6.84 37.21 0.25 0.78 16 21 O -0.39 -3.96 10.77 -35.23 -0.38 -4.34 16 22 C 0.06 0.47 6.84 37.20 0.25 0.73 16 23 C -0.15 -1.16 5.42 -26.59 -0.14 -1.31 16 24 H 0.05 1.13 4.41 -51.93 -0.23 0.90 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.27 7.99 8.72 -40.82 -0.36 7.63 16 28 H 0.39 7.01 8.53 -40.82 -0.35 6.67 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.94 6.61 -51.93 -0.34 0.60 16 32 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.77 6.75 -51.93 -0.35 0.42 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -32.11 336.54 -7.27 -39.38 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.55 Total: 3.49 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -0.68 Total: -11.32 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.48 Total: -41.16 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.29 Total: -16.88 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -4.30 Total: 21.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.11 -7.27 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330379481.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.976 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds