Wall clock time and date at job start Mon Mar 30 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46858 * 2 1 4 4 C 1.50703 * 109.47109 * 119.99901 * 2 1 3 5 5 H 1.07989 * 119.99917 * 85.87464 * 4 2 1 6 6 C 1.37877 * 119.99665 * 265.87433 * 4 2 1 7 7 N 1.31518 * 119.99718 * 177.64134 * 6 4 2 8 8 Si 1.86798 * 120.00409 * 357.63523 * 6 4 2 9 9 H 1.48496 * 109.47284 * 274.92510 * 8 6 4 10 10 H 1.48509 * 109.46806 * 34.92742 * 8 6 4 11 11 H 1.48500 * 109.47336 * 154.92335 * 8 6 4 12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3 13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1 14 14 O 1.21276 * 120.00272 * 0.02562 * 13 12 2 15 15 C 1.50707 * 120.00000 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47034 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47051 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.47307 * 180.02562 * 17 16 15 19 19 C 1.53176 * 109.54082 * 294.55152 * 18 17 16 20 20 C 1.53093 * 109.16454 * 183.15091 * 19 18 17 21 21 O 1.42905 * 109.41289 * 57.61194 * 20 19 18 22 22 C 1.42906 * 114.09640 * 298.84181 * 21 20 19 23 23 C 1.53094 * 109.41432 * 61.15939 * 22 21 20 24 24 H 1.09000 * 109.47341 * 296.13363 * 1 2 3 25 25 H 1.08996 * 109.47554 * 56.13746 * 1 2 3 26 26 H 1.09000 * 109.47220 * 176.13458 * 1 2 3 27 27 H 0.96999 * 119.99984 * 180.02562 * 7 6 4 28 28 H 0.96997 * 119.99861 * 264.99760 * 12 2 1 29 29 H 1.08998 * 109.47225 * 300.00636 * 15 13 12 30 30 H 1.09006 * 109.46396 * 60.00406 * 15 13 12 31 31 H 1.09004 * 109.47368 * 300.00055 * 16 15 13 32 32 H 1.09000 * 109.47259 * 60.00005 * 16 15 13 33 33 H 1.09006 * 109.47210 * 299.99925 * 17 16 15 34 34 H 1.09000 * 109.47458 * 59.99670 * 17 16 15 35 35 H 1.08995 * 109.54500 * 54.81887 * 18 17 16 36 36 H 1.08999 * 109.52463 * 303.05970 * 19 18 17 37 37 H 1.09007 * 109.52350 * 63.24711 * 19 18 17 38 38 H 1.08994 * 109.48029 * 297.62762 * 20 19 18 39 39 H 1.09002 * 109.48264 * 177.59078 * 20 19 18 40 40 H 1.08999 * 109.47698 * 301.17611 * 22 21 20 41 41 H 1.09001 * 109.48712 * 181.14858 * 22 21 20 42 42 H 1.08999 * 109.52241 * 182.48745 * 23 22 21 43 43 H 1.08996 * 109.52373 * 62.29933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.1489 -1.7840 1.2244 6 6 2.3431 0.0104 2.3640 7 7 2.7371 -0.6136 3.4526 8 14 2.2046 1.8732 2.3536 9 1 3.4567 2.4597 1.8119 10 1 1.0583 2.2796 1.5013 11 1 1.9885 2.3614 3.7393 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7285 -3.5875 16 6 2.7006 0.2544 -4.7588 17 6 3.2106 -0.4669 -6.0080 18 6 3.2619 0.5162 -7.1793 19 6 1.8410 0.9644 -7.5347 20 6 1.8952 1.8853 -8.7565 21 8 2.5168 1.1965 -9.8433 22 6 3.8639 0.7949 -9.5855 23 6 3.8886 -0.1699 -8.3971 24 1 -0.3634 0.4526 0.9226 25 1 -0.3634 0.5726 -0.8533 26 1 -0.3633 -1.0253 -0.0693 27 1 2.9554 -0.1065 4.2502 28 1 2.2490 -1.6317 -1.1525 29 1 3.6492 -1.1204 -3.3978 30 1 1.9776 -1.5508 -3.8325 31 1 1.7011 0.6458 -4.9483 32 1 3.3725 1.0770 -4.5140 33 1 4.2101 -0.8586 -5.8189 34 1 2.5384 -1.2893 -6.2527 35 1 3.8605 1.3837 -6.9014 36 1 1.2301 0.0911 -7.7637 37 1 1.4072 1.5026 -6.6919 38 1 2.4725 2.7775 -8.5138 39 1 0.8829 2.1732 -9.0400 40 1 4.4668 1.6728 -9.3537 41 1 4.2698 0.2972 -10.4662 42 1 4.9194 -0.4429 -8.1709 43 1 3.3192 -1.0661 -8.6434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330379482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:18 Heat of formation + Delta-G solvation = -123.946602 kcal Electronic energy + Delta-G solvation = -20575.941466 eV Core-core repulsion = 17426.551579 eV Total energy + Delta-G solvation = -3149.389886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74517 -38.99138 -36.06332 -34.84794 -32.68262 -32.29114 -31.33306 -29.91570 -27.73705 -25.31034 -24.27281 -23.68190 -21.62607 -20.43581 -20.22502 -19.49709 -17.34912 -16.41286 -16.26758 -15.89566 -15.70570 -15.37403 -14.98633 -14.66751 -14.13019 -14.03706 -13.56154 -13.15462 -12.88099 -12.65305 -12.52101 -12.38119 -11.98223 -11.75399 -11.61867 -11.49751 -11.39321 -11.11585 -10.98536 -10.81793 -10.75583 -10.54250 -10.46566 -10.36262 -9.89048 -9.72751 -9.18483 -9.07545 -8.72546 -8.06173 -6.23808 -4.27494 3.25103 3.33177 3.34635 3.40975 3.62866 4.01024 4.32137 4.46266 4.48745 4.61053 4.76319 4.94113 5.06717 5.10005 5.13498 5.19266 5.22754 5.32658 5.42941 5.47941 5.55748 5.57626 5.68514 5.74418 5.78562 5.87792 5.94027 5.95778 6.11704 6.30703 6.33189 6.42392 6.54070 6.68482 6.93655 6.94570 7.19025 7.39390 7.57505 8.15032 8.59688 8.76834 9.02982 9.38537 10.88063 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040216 B = 0.003039 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.079719 B = 9212.617499 C = 9368.161081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.260 1.260 11 H -0.286 1.286 12 N -0.706 5.706 13 C 0.498 3.502 14 O -0.563 6.563 15 C -0.142 4.142 16 C -0.103 4.103 17 C -0.113 4.113 18 C -0.090 4.090 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.387 6.387 22 C 0.060 3.940 23 C -0.151 4.151 24 H 0.053 0.947 25 H 0.028 0.972 26 H 0.044 0.956 27 H 0.268 0.732 28 H 0.393 0.607 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 0.319 -22.839 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.066 0.934 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.185 1.185 11 H -0.212 1.212 12 N -0.355 5.355 13 C 0.284 3.716 14 O -0.443 6.443 15 C -0.182 4.182 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.108 4.108 19 C -0.191 4.191 20 C -0.017 4.017 21 O -0.305 6.305 22 C -0.017 4.017 23 C -0.189 4.189 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.226 0.774 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.319 1.141 -22.808 22.875 hybrid contribution 0.270 0.428 0.597 0.783 sum 1.589 1.569 -22.211 22.323 Atomic orbital electron populations 1.22232 0.98741 1.00047 0.99658 1.19075 0.90810 0.94282 0.83014 0.93398 1.21025 1.45261 0.95776 0.94796 0.90375 1.24942 0.93598 0.98647 0.95252 1.69882 1.44286 1.36243 1.02298 0.86883 0.79861 0.85762 0.77306 1.19899 1.18465 1.21185 1.46622 1.64986 1.13857 1.09989 1.20654 0.78354 0.87593 0.85035 1.90626 1.51845 1.16357 1.85464 1.21696 1.02760 0.99695 0.94086 1.21350 1.02597 0.97783 0.92369 1.21650 1.01456 0.97912 0.94043 1.21208 0.96268 0.98747 0.94621 1.22310 0.97437 1.00786 0.98585 1.22611 0.98199 0.93890 0.87038 1.87917 1.27146 1.76386 1.39088 1.22575 0.83691 0.97179 0.98247 1.22257 1.01685 0.99498 0.95457 0.92749 0.95278 0.93658 0.92257 0.77380 0.89447 0.89592 0.91184 0.91380 0.91832 0.91890 0.90985 0.91043 0.90177 0.93238 0.88966 0.93315 0.89103 0.90896 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.44 37.16 0.35 -2.93 16 2 C 0.23 5.55 2.16 -69.09 -0.15 5.40 16 3 H 0.05 1.26 4.89 -51.93 -0.25 1.01 16 4 C -0.53 -14.34 9.05 -34.44 -0.31 -14.65 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 8 Si 0.88 21.73 26.74 -169.99 -4.55 17.18 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.26 -6.36 6.87 56.52 0.39 -5.98 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.71 -14.19 5.07 -54.93 -0.28 -14.46 16 13 C 0.50 9.41 7.79 -10.98 -0.09 9.32 16 14 O -0.56 -12.76 15.64 5.56 0.09 -12.67 16 15 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 16 C -0.10 -1.26 4.27 -26.74 -0.11 -1.37 16 17 C -0.11 -1.05 4.69 -26.73 -0.13 -1.18 16 18 C -0.09 -0.80 2.27 -90.44 -0.21 -1.00 16 19 C -0.15 -1.40 5.10 -26.59 -0.14 -1.53 16 20 C 0.06 0.53 6.84 37.21 0.25 0.78 16 21 O -0.39 -3.98 10.77 -35.23 -0.38 -4.36 16 22 C 0.06 0.48 6.84 37.21 0.25 0.73 16 23 C -0.15 -1.18 5.42 -26.59 -0.14 -1.32 16 24 H 0.05 1.22 7.92 -51.93 -0.41 0.81 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.39 6.90 8.59 -40.82 -0.35 6.55 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.92 6.62 -51.93 -0.34 0.57 16 32 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.77 6.75 -51.93 -0.35 0.41 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -31.83 341.54 -7.48 -39.32 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.62 Total: 3.04 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.67 Total: -7.64 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.50 Total: -40.02 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.29 Total: -17.03 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.55 Total: 17.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.83 -7.48 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330379482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.629 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds