Wall clock time and date at job start Mon Mar 30 2020 00:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46858 * 2 1 4 4 C 1.50703 * 109.47109 * 119.99901 * 2 1 3 5 5 H 1.07989 * 119.99917 * 85.87464 * 4 2 1 6 6 C 1.37877 * 119.99665 * 265.87433 * 4 2 1 7 7 N 1.31518 * 119.99718 * 177.64134 * 6 4 2 8 8 Si 1.86798 * 120.00409 * 357.63523 * 6 4 2 9 9 H 1.48496 * 109.47284 * 274.92510 * 8 6 4 10 10 H 1.48509 * 109.46806 * 34.92742 * 8 6 4 11 11 H 1.48500 * 109.47336 * 154.92335 * 8 6 4 12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3 13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1 14 14 O 1.21276 * 120.00272 * 0.02562 * 13 12 2 15 15 C 1.50707 * 120.00000 * 179.97438 * 13 12 2 16 16 C 1.52995 * 109.47034 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47051 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.47307 * 180.02562 * 17 16 15 19 19 C 1.53176 * 109.54082 * 294.55152 * 18 17 16 20 20 C 1.53093 * 109.16454 * 183.15091 * 19 18 17 21 21 O 1.42905 * 109.41289 * 57.61194 * 20 19 18 22 22 C 1.42906 * 114.09640 * 298.84181 * 21 20 19 23 23 C 1.53094 * 109.41432 * 61.15939 * 22 21 20 24 24 H 1.09000 * 109.47341 * 296.13363 * 1 2 3 25 25 H 1.08996 * 109.47554 * 56.13746 * 1 2 3 26 26 H 1.09000 * 109.47220 * 176.13458 * 1 2 3 27 27 H 0.96999 * 119.99984 * 180.02562 * 7 6 4 28 28 H 0.96997 * 119.99861 * 264.99760 * 12 2 1 29 29 H 1.08998 * 109.47225 * 300.00636 * 15 13 12 30 30 H 1.09006 * 109.46396 * 60.00406 * 15 13 12 31 31 H 1.09004 * 109.47368 * 300.00055 * 16 15 13 32 32 H 1.09000 * 109.47259 * 60.00005 * 16 15 13 33 33 H 1.09006 * 109.47210 * 299.99925 * 17 16 15 34 34 H 1.09000 * 109.47458 * 59.99670 * 17 16 15 35 35 H 1.08995 * 109.54500 * 54.81887 * 18 17 16 36 36 H 1.08999 * 109.52463 * 303.05970 * 19 18 17 37 37 H 1.09007 * 109.52350 * 63.24711 * 19 18 17 38 38 H 1.08994 * 109.48029 * 297.62762 * 20 19 18 39 39 H 1.09002 * 109.48264 * 177.59078 * 20 19 18 40 40 H 1.08999 * 109.47698 * 301.17611 * 22 21 20 41 41 H 1.09001 * 109.48712 * 181.14858 * 22 21 20 42 42 H 1.08999 * 109.52241 * 182.48745 * 23 22 21 43 43 H 1.08996 * 109.52373 * 62.29933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.1489 -1.7840 1.2244 6 6 2.3431 0.0104 2.3640 7 7 2.7371 -0.6136 3.4526 8 14 2.2046 1.8732 2.3536 9 1 3.4567 2.4597 1.8119 10 1 1.0583 2.2796 1.5013 11 1 1.9885 2.3614 3.7393 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7285 -3.5875 16 6 2.7006 0.2544 -4.7588 17 6 3.2106 -0.4669 -6.0080 18 6 3.2619 0.5162 -7.1793 19 6 1.8410 0.9644 -7.5347 20 6 1.8952 1.8853 -8.7565 21 8 2.5168 1.1965 -9.8433 22 6 3.8639 0.7949 -9.5855 23 6 3.8886 -0.1699 -8.3971 24 1 -0.3634 0.4526 0.9226 25 1 -0.3634 0.5726 -0.8533 26 1 -0.3633 -1.0253 -0.0693 27 1 2.9554 -0.1065 4.2502 28 1 2.2490 -1.6317 -1.1525 29 1 3.6492 -1.1204 -3.3978 30 1 1.9776 -1.5508 -3.8325 31 1 1.7011 0.6458 -4.9483 32 1 3.3725 1.0770 -4.5140 33 1 4.2101 -0.8586 -5.8189 34 1 2.5384 -1.2893 -6.2527 35 1 3.8605 1.3837 -6.9014 36 1 1.2301 0.0911 -7.7637 37 1 1.4072 1.5026 -6.6919 38 1 2.4725 2.7775 -8.5138 39 1 0.8829 2.1732 -9.0400 40 1 4.4668 1.6728 -9.3537 41 1 4.2698 0.2972 -10.4662 42 1 4.9194 -0.4429 -8.1709 43 1 3.3192 -1.0661 -8.6434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330379482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:17 Heat of formation + Delta-G solvation = -145.015286 kcal Electronic energy + Delta-G solvation = -20576.855072 eV Core-core repulsion = 17426.551579 eV Total energy + Delta-G solvation = -3150.303493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70864 -40.26960 -37.08287 -36.47748 -34.38182 -33.61816 -31.99937 -31.57905 -28.71527 -27.33516 -25.18281 -24.40987 -22.86457 -21.77774 -21.15100 -20.89295 -19.21133 -17.62791 -17.24547 -17.01708 -16.96324 -16.68149 -15.91558 -15.77965 -15.46876 -15.00333 -14.82327 -14.62836 -14.40150 -14.23696 -13.80569 -13.43455 -13.14952 -13.11079 -12.84546 -12.71576 -12.64003 -12.46632 -12.31691 -12.19328 -11.89656 -11.80261 -11.58653 -11.22973 -11.15405 -11.11899 -10.89418 -10.67525 -10.37394 -9.78001 -8.40479 -6.46611 1.27495 1.31879 1.42816 1.84927 2.25498 2.53355 2.99434 3.03409 3.71363 3.78863 3.89294 4.02257 4.11653 4.19830 4.27597 4.34758 4.43643 4.53078 4.55675 4.67369 4.73329 4.75072 4.78299 4.80382 4.82718 4.87777 4.98209 5.04351 5.08548 5.14118 5.17239 5.22185 5.32816 5.36471 5.44352 5.48133 5.55338 5.77730 6.12353 6.28521 6.58593 6.95410 7.20018 7.52795 8.74617 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040216 B = 0.003039 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.079719 B = 9212.617499 C = 9368.161081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.233 3.767 3 H 0.026 0.974 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.927 3.073 9 H -0.275 1.275 10 H -0.256 1.256 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.493 3.507 14 O -0.603 6.603 15 C -0.130 4.130 16 C -0.099 4.099 17 C -0.103 4.103 18 C -0.091 4.091 19 C -0.152 4.152 20 C 0.057 3.943 21 O -0.406 6.406 22 C 0.053 3.947 23 C -0.146 4.146 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.271 0.729 28 H 0.406 0.594 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -0.097 -24.593 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.129 3.871 3 H 0.044 0.956 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.752 3.248 9 H -0.201 1.201 10 H -0.181 1.181 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.282 3.718 14 O -0.486 6.486 15 C -0.170 4.170 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.110 4.110 19 C -0.189 4.189 20 C -0.020 4.020 21 O -0.325 6.325 22 C -0.023 4.023 23 C -0.183 4.183 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.241 0.759 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.566 0.701 -24.584 24.644 hybrid contribution 0.199 0.516 1.091 1.223 sum 1.765 1.217 -23.494 23.592 Atomic orbital electron populations 1.22121 0.97282 1.01034 0.99580 1.18824 0.91873 0.93004 0.83438 0.95595 1.21217 1.44315 0.94991 0.95948 0.92454 1.25610 0.93777 1.02370 0.95115 1.69975 1.46151 1.37783 1.03060 0.86054 0.79704 0.81379 0.77670 1.20112 1.18057 1.20174 1.46419 1.65311 1.14487 1.09455 1.21638 0.77080 0.87222 0.85901 1.90609 1.53410 1.18400 1.86142 1.21728 1.04268 0.99931 0.91060 1.21307 1.01630 0.97377 0.93392 1.21570 1.02189 0.97809 0.92508 1.21210 0.96034 0.98640 0.95080 1.22273 0.97665 1.00662 0.98322 1.22669 0.98666 0.93844 0.86775 1.87890 1.28271 1.76615 1.39744 1.22750 0.82856 0.97596 0.99078 1.22214 1.02356 0.99138 0.94628 0.93416 0.94659 0.92221 0.92017 0.75852 0.87183 0.86687 0.92472 0.93241 0.90584 0.90849 0.91569 0.91189 0.91062 0.93015 0.88302 0.92912 0.87703 0.89489 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.11 9.44 71.98 0.68 -5.43 16 2 C 0.23 11.03 2.16 44.25 0.10 11.13 16 3 H 0.03 1.36 4.89 -2.38 -0.01 1.35 16 4 C -0.53 -28.48 9.05 25.60 0.23 -28.25 16 5 H 0.06 3.28 8.06 -2.92 -0.02 3.26 16 6 C 0.03 1.78 5.47 84.65 0.46 2.24 16 7 N -0.93 -55.55 13.96 21.45 0.30 -55.25 16 8 Si 0.93 44.87 26.74 68.60 1.83 46.70 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 10 H -0.26 -12.14 6.87 99.48 0.68 -11.45 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 N -0.71 -27.46 5.07 -446.10 -2.26 -29.72 16 13 C 0.49 17.88 7.79 87.66 0.68 18.56 16 14 O -0.60 -27.00 15.64 -3.02 -0.05 -27.05 16 15 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 16 C -0.10 -2.23 4.27 30.59 0.13 -2.10 16 17 C -0.10 -1.64 4.69 30.59 0.14 -1.49 16 18 C -0.09 -1.44 2.27 -10.67 -0.02 -1.47 16 19 C -0.15 -2.58 5.10 30.68 0.16 -2.42 16 20 C 0.06 0.95 6.84 72.01 0.49 1.45 16 21 O -0.41 -7.81 10.77 -148.98 -1.60 -9.41 16 22 C 0.05 0.76 6.84 72.01 0.49 1.25 16 23 C -0.15 -1.92 5.42 30.69 0.17 -1.75 16 24 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 25 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.41 13.58 8.59 -92.71 -0.80 12.78 16 29 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.06 1.44 6.62 -2.39 -0.02 1.42 16 32 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.33 6.75 -2.38 -0.02 1.31 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -68.26 341.54 2.26 -66.01 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.15 Total: 19.90 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.88 Total: -11.17 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.96 Total: -84.98 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.65 Total: -36.46 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.83 Total: 46.70 kcal Total: -68.26 2.26 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330379482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.009 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds