Wall clock time and date at job start Mon Mar 30 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47447 * 2 1 4 4 C 1.42895 * 113.99986 * 184.96611 * 3 2 1 5 5 C 1.50696 * 110.02016 * 304.32482 * 4 3 2 6 6 O 1.21287 * 120.00348 * 129.71867 * 5 4 3 7 7 N 1.34779 * 120.00408 * 309.72054 * 5 4 3 8 8 C 1.46498 * 119.99625 * 4.35897 * 7 5 4 9 9 C 1.52993 * 109.47186 * 263.30370 * 8 7 5 10 10 C 1.46497 * 120.00206 * 184.35132 * 7 5 4 11 11 C 1.50695 * 109.47539 * 270.00288 * 10 7 5 12 12 H 1.08001 * 119.99967 * 0.02562 * 11 10 7 13 13 C 1.37882 * 120.00077 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99724 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00002 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47507 * 89.99687 * 15 13 11 17 17 H 1.48503 * 109.46985 * 209.99816 * 15 13 11 18 18 H 1.48499 * 109.47060 * 329.99390 * 15 13 11 19 19 C 1.54263 * 110.03492 * 65.72100 * 4 3 2 20 20 C 1.54960 * 104.16359 * 95.74979 * 19 4 3 21 21 C 1.54893 * 102.77507 * 37.89221 * 20 19 4 22 22 C 1.53877 * 110.03432 * 182.93771 * 4 3 2 23 23 H 1.09005 * 109.46880 * 304.98531 * 1 2 3 24 24 H 1.09002 * 109.46990 * 64.98775 * 1 2 3 25 25 H 1.08995 * 109.47494 * 184.99251 * 1 2 3 26 26 H 1.09001 * 109.47185 * 239.99795 * 2 1 3 27 27 H 1.09005 * 109.47205 * 120.00221 * 2 1 3 28 28 H 1.09006 * 109.47418 * 23.30683 * 8 7 5 29 29 H 1.09002 * 109.47373 * 143.30373 * 8 7 5 30 30 H 1.08992 * 109.47419 * 305.52532 * 9 8 7 31 31 H 1.09001 * 109.46960 * 65.52815 * 9 8 7 32 32 H 1.09003 * 109.47508 * 185.52474 * 9 8 7 33 33 H 1.08998 * 109.47274 * 30.00923 * 10 7 5 34 34 H 1.09004 * 109.46925 * 150.00133 * 10 7 5 35 35 H 0.97007 * 119.99996 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.48888 * 214.40012 * 19 4 3 37 37 H 1.08999 * 110.48518 * 337.03980 * 19 4 3 38 38 H 1.08998 * 110.72323 * 279.57686 * 20 19 4 39 39 H 1.08995 * 110.76714 * 156.22490 * 20 19 4 40 40 H 1.09005 * 110.48682 * 203.40562 * 21 20 19 41 41 H 1.08999 * 110.48963 * 80.76196 * 21 20 19 42 42 H 1.08999 * 110.03057 * 359.95060 * 22 4 3 43 43 H 1.08995 * 110.03807 * 121.37828 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4263 1.4616 -0.1130 5 6 4.0962 0.6737 0.9830 6 8 4.9814 -0.1101 0.7124 7 7 3.7117 0.8397 2.2641 8 6 2.5796 1.7137 2.5816 9 6 3.0989 3.0966 2.9797 10 6 4.4257 0.1462 3.3390 11 6 3.7841 -1.1951 3.5845 12 1 2.9301 -1.5006 2.9982 13 6 4.2873 -2.0322 4.5577 14 7 5.3275 -1.6603 5.2713 15 14 3.4924 -3.6951 4.8615 16 1 4.1378 -4.7173 3.9991 17 1 3.6627 -4.0718 6.2879 18 1 2.0449 -3.6180 4.5394 19 6 3.8897 0.9483 -1.4919 20 6 3.9906 2.2287 -2.3589 21 6 4.5480 3.2746 -1.3615 22 6 3.8443 2.9402 -0.0300 23 1 -0.3633 0.5893 0.8420 24 1 -0.3633 0.4345 -0.9313 25 1 -0.3634 -1.0237 0.0894 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9350 1.8054 1.7074 29 1 2.0118 1.2869 3.4084 30 1 3.8194 2.9945 3.7911 31 1 3.5819 3.5642 2.1216 32 1 2.2654 3.7166 3.3098 33 1 5.4670 0.0035 3.0504 34 1 4.3797 0.7432 4.2498 35 1 5.6814 -2.2491 5.9562 36 1 4.8632 0.4646 -1.4115 37 1 3.1545 0.2607 -1.9098 38 1 3.0072 2.5271 -2.7221 39 1 4.6813 2.0801 -3.1888 40 1 4.2930 4.2839 -1.6848 41 1 5.6279 3.1670 -1.2597 42 1 2.9640 3.5706 0.0955 43 1 4.5315 3.0878 0.8029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330565275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:48 Heat of formation + Delta-G solvation = -84.680143 kcal Electronic energy + Delta-G solvation = -22841.819194 eV Core-core repulsion = 19694.132029 eV Total energy + Delta-G solvation = -3147.687165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49144 -37.38231 -36.07222 -35.15102 -32.74051 -31.10711 -30.04742 -28.68036 -28.20030 -26.74529 -23.31479 -22.88951 -22.59324 -20.81679 -20.33098 -18.57498 -17.11211 -16.34358 -16.15780 -15.75328 -15.15353 -14.93792 -14.39361 -14.20628 -13.60527 -13.43812 -13.20323 -13.01165 -12.71847 -12.42069 -12.17371 -11.94106 -11.78831 -11.50666 -11.43454 -11.28093 -11.19233 -11.00516 -10.91714 -10.76599 -10.71032 -10.53836 -10.46002 -10.29876 -10.13765 -9.61499 -9.52936 -8.47037 -8.41991 -7.58422 -6.02809 -4.07112 3.25645 3.31070 3.37002 3.39288 3.71602 4.01498 4.44956 4.60796 4.70153 4.97774 5.17881 5.20377 5.31760 5.34554 5.47523 5.52291 5.56743 5.66355 5.71591 5.73428 5.82481 5.85728 5.91397 5.93160 5.98179 6.06758 6.10100 6.15125 6.18234 6.31026 6.38877 6.44689 6.47907 6.72241 7.07097 7.30737 7.46342 7.61295 7.93807 8.25947 8.48367 8.90632 9.09269 9.57543 11.05311 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.006501 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.238465 B = 4306.325859 C = 4583.067179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.362 6.362 4 C 0.101 3.899 5 C 0.486 3.514 6 O -0.537 6.537 7 N -0.584 5.584 8 C 0.075 3.925 9 C -0.176 4.176 10 C 0.244 3.756 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.141 4.141 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.110 4.110 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 10.026 -11.642 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 O -0.282 6.282 4 C 0.058 3.942 5 C 0.271 3.729 6 O -0.415 6.415 7 N -0.315 5.315 8 C -0.048 4.048 9 C -0.234 4.234 10 C 0.125 3.875 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.179 4.179 20 C -0.156 4.156 21 C -0.161 4.161 22 C -0.148 4.148 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.868 9.701 -11.566 16.585 hybrid contribution -0.253 -1.238 0.502 1.359 sum -7.121 8.463 -11.065 15.645 Atomic orbital electron populations 1.21712 0.93629 1.02321 1.02563 1.22645 0.95280 0.83874 1.01664 1.87814 1.20068 1.27118 1.93201 1.22419 0.81097 0.96599 0.94082 1.20788 0.84423 0.83328 0.84359 1.90655 1.32244 1.36302 1.82316 1.48231 1.31734 1.44826 1.06704 1.22112 0.89712 0.89418 1.03601 1.22401 1.01455 0.97631 1.01957 1.19268 0.93032 0.91350 0.83862 1.21397 1.14772 1.01551 1.18330 0.92624 1.24931 0.95017 0.98345 0.95832 1.69935 1.23504 1.37179 1.22826 0.86525 0.79600 0.84164 0.77298 1.20586 1.21134 1.19940 1.22881 1.03685 0.98016 0.93340 1.22448 1.00879 0.94833 0.97438 1.22376 1.00227 0.98957 0.94513 1.22359 1.01048 0.92697 0.98662 0.91700 0.92323 0.91200 0.92974 0.91764 0.87215 0.91123 0.92595 0.92283 0.92481 0.94248 0.95037 0.92771 0.88676 0.90922 0.91380 0.91475 0.91281 0.91307 0.89606 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.16 0.38 -1.36 16 2 C 0.04 0.63 5.61 37.16 0.21 0.84 16 3 O -0.36 -5.56 6.98 -35.23 -0.25 -5.81 16 4 C 0.10 1.63 0.53 -90.66 -0.05 1.59 16 5 C 0.49 10.37 4.97 -10.99 -0.05 10.32 16 6 O -0.54 -13.69 15.01 5.55 0.08 -13.61 16 7 N -0.58 -12.73 2.30 -175.07 -0.40 -13.13 16 8 C 0.07 1.32 5.45 -4.05 -0.02 1.30 16 9 C -0.18 -2.64 10.06 37.15 0.37 -2.27 16 10 C 0.24 6.52 5.15 -5.20 -0.03 6.49 16 11 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.14 -2.11 5.74 -25.04 -0.14 -2.25 16 20 C -0.12 -1.37 6.91 -24.70 -0.17 -1.54 16 21 C -0.12 -1.41 6.83 -25.07 -0.17 -1.58 16 22 C -0.11 -1.50 4.29 -25.61 -0.11 -1.61 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.77 6.23 -51.93 -0.32 0.45 16 27 H 0.06 1.20 7.05 -51.93 -0.37 0.84 16 28 H 0.11 1.79 4.13 -52.30 -0.22 1.57 16 29 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 30 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 31 H 0.06 0.81 4.42 -51.93 -0.23 0.58 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 1.18 7.49 -51.93 -0.39 0.79 16 34 H 0.03 0.86 7.94 -51.93 -0.41 0.44 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 36 H 0.09 1.62 6.79 -51.93 -0.35 1.27 16 37 H 0.07 1.03 6.14 -51.93 -0.32 0.72 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.05 7.73 -51.93 -0.40 0.65 16 43 H 0.08 1.20 5.96 -51.93 -0.31 0.89 16 LS Contribution 330.36 15.07 4.98 4.98 Total: -1.00 -32.19 330.36 -7.16 -39.35 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.08 Total: 1.08 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.20 Total: -3.74 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.33 Total: -39.33 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.16 Total: -19.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.19 -7.16 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330565275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.331 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds