Wall clock time and date at job start Mon Mar 30 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47447 * 2 1 4 4 C 1.42895 * 113.99986 * 184.96611 * 3 2 1 5 5 C 1.50696 * 110.02016 * 304.32482 * 4 3 2 6 6 O 1.21287 * 120.00348 * 129.71867 * 5 4 3 7 7 N 1.34779 * 120.00408 * 309.72054 * 5 4 3 8 8 C 1.46498 * 119.99625 * 4.35897 * 7 5 4 9 9 C 1.52993 * 109.47186 * 263.30370 * 8 7 5 10 10 C 1.46497 * 120.00206 * 184.35132 * 7 5 4 11 11 C 1.50695 * 109.47539 * 270.00288 * 10 7 5 12 12 H 1.08001 * 119.99967 * 0.02562 * 11 10 7 13 13 C 1.37882 * 120.00077 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99724 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00002 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47507 * 89.99687 * 15 13 11 17 17 H 1.48503 * 109.46985 * 209.99816 * 15 13 11 18 18 H 1.48499 * 109.47060 * 329.99390 * 15 13 11 19 19 C 1.54263 * 110.03492 * 65.72100 * 4 3 2 20 20 C 1.54960 * 104.16359 * 95.74979 * 19 4 3 21 21 C 1.54893 * 102.77507 * 37.89221 * 20 19 4 22 22 C 1.53877 * 110.03432 * 182.93771 * 4 3 2 23 23 H 1.09005 * 109.46880 * 304.98531 * 1 2 3 24 24 H 1.09002 * 109.46990 * 64.98775 * 1 2 3 25 25 H 1.08995 * 109.47494 * 184.99251 * 1 2 3 26 26 H 1.09001 * 109.47185 * 239.99795 * 2 1 3 27 27 H 1.09005 * 109.47205 * 120.00221 * 2 1 3 28 28 H 1.09006 * 109.47418 * 23.30683 * 8 7 5 29 29 H 1.09002 * 109.47373 * 143.30373 * 8 7 5 30 30 H 1.08992 * 109.47419 * 305.52532 * 9 8 7 31 31 H 1.09001 * 109.46960 * 65.52815 * 9 8 7 32 32 H 1.09003 * 109.47508 * 185.52474 * 9 8 7 33 33 H 1.08998 * 109.47274 * 30.00923 * 10 7 5 34 34 H 1.09004 * 109.46925 * 150.00133 * 10 7 5 35 35 H 0.97007 * 119.99996 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.48888 * 214.40012 * 19 4 3 37 37 H 1.08999 * 110.48518 * 337.03980 * 19 4 3 38 38 H 1.08998 * 110.72323 * 279.57686 * 20 19 4 39 39 H 1.08995 * 110.76714 * 156.22490 * 20 19 4 40 40 H 1.09005 * 110.48682 * 203.40562 * 21 20 19 41 41 H 1.08999 * 110.48963 * 80.76196 * 21 20 19 42 42 H 1.08999 * 110.03057 * 359.95060 * 22 4 3 43 43 H 1.08995 * 110.03807 * 121.37828 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4263 1.4616 -0.1130 5 6 4.0962 0.6737 0.9830 6 8 4.9814 -0.1101 0.7124 7 7 3.7117 0.8397 2.2641 8 6 2.5796 1.7137 2.5816 9 6 3.0989 3.0966 2.9797 10 6 4.4257 0.1462 3.3390 11 6 3.7841 -1.1951 3.5845 12 1 2.9301 -1.5006 2.9982 13 6 4.2873 -2.0322 4.5577 14 7 5.3275 -1.6603 5.2713 15 14 3.4924 -3.6951 4.8615 16 1 4.1378 -4.7173 3.9991 17 1 3.6627 -4.0718 6.2879 18 1 2.0449 -3.6180 4.5394 19 6 3.8897 0.9483 -1.4919 20 6 3.9906 2.2287 -2.3589 21 6 4.5480 3.2746 -1.3615 22 6 3.8443 2.9402 -0.0300 23 1 -0.3633 0.5893 0.8420 24 1 -0.3633 0.4345 -0.9313 25 1 -0.3634 -1.0237 0.0894 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9350 1.8054 1.7074 29 1 2.0118 1.2869 3.4084 30 1 3.8194 2.9945 3.7911 31 1 3.5819 3.5642 2.1216 32 1 2.2654 3.7166 3.3098 33 1 5.4670 0.0035 3.0504 34 1 4.3797 0.7432 4.2498 35 1 5.6814 -2.2491 5.9562 36 1 4.8632 0.4646 -1.4115 37 1 3.1545 0.2607 -1.9098 38 1 3.0072 2.5271 -2.7221 39 1 4.6813 2.0801 -3.1888 40 1 4.2930 4.2839 -1.6848 41 1 5.6279 3.1670 -1.2597 42 1 2.9640 3.5706 0.0955 43 1 4.5315 3.0878 0.8029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330565275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:48 Heat of formation + Delta-G solvation = -104.765665 kcal Electronic energy + Delta-G solvation = -22842.690168 eV Core-core repulsion = 19694.132029 eV Total energy + Delta-G solvation = -3148.558138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.94891 -38.94798 -37.39595 -36.71570 -34.90265 -32.24065 -31.66695 -29.87131 -29.65613 -28.45063 -25.31529 -24.21135 -23.86954 -22.21492 -21.44584 -20.03486 -18.86392 -18.32972 -17.64591 -17.06932 -16.85963 -16.31288 -16.12916 -15.51547 -15.15842 -14.89768 -14.61568 -14.31199 -14.06858 -13.79935 -13.63615 -13.38971 -13.27645 -13.13543 -12.91792 -12.68504 -12.61029 -12.56057 -12.36606 -12.22849 -12.03345 -11.96349 -11.84129 -11.69870 -11.56895 -11.45193 -10.99126 -10.69031 -10.07118 -9.44647 -8.26277 -6.41265 1.31878 1.35171 1.44849 1.61709 2.19419 2.37618 2.57552 3.02749 3.36571 3.57236 3.70932 4.03337 4.16379 4.21838 4.29018 4.37548 4.42970 4.47847 4.49087 4.58760 4.67873 4.73708 4.80778 4.85556 4.91136 4.96208 5.01474 5.03499 5.06802 5.12458 5.14523 5.19231 5.24648 5.28299 5.41729 5.46901 5.55335 5.80435 6.00056 6.03933 6.65000 6.75850 7.22047 7.38951 8.81058 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.006501 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.238465 B = 4306.325859 C = 4583.067179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.040 3.960 3 O -0.351 6.351 4 C 0.108 3.892 5 C 0.478 3.522 6 O -0.591 6.591 7 N -0.588 5.588 8 C 0.073 3.927 9 C -0.170 4.170 10 C 0.261 3.739 11 C -0.540 4.540 12 H 0.050 0.950 13 C 0.007 3.993 14 N -0.928 5.928 15 Si 0.967 3.033 16 H -0.279 1.279 17 H -0.272 1.272 18 H -0.261 1.261 19 C -0.145 4.145 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.110 4.110 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.022 0.978 28 H 0.130 0.870 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.091 0.909 33 H -0.007 1.007 34 H 0.020 0.980 35 H 0.268 0.732 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 11.344 -13.195 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.037 4.037 3 O -0.270 6.270 4 C 0.065 3.935 5 C 0.265 3.735 6 O -0.473 6.473 7 N -0.318 5.318 8 C -0.049 4.049 9 C -0.227 4.227 10 C 0.140 3.860 11 C -0.579 4.579 12 H 0.068 0.932 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.791 3.209 16 H -0.205 1.205 17 H -0.197 1.197 18 H -0.186 1.186 19 C -0.183 4.183 20 C -0.145 4.145 21 C -0.157 4.157 22 C -0.147 4.147 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.148 0.852 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.011 0.989 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.128 0.872 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.303 11.059 -13.123 19.520 hybrid contribution 0.525 -1.659 0.995 2.005 sum -8.777 9.399 -12.127 17.677 Atomic orbital electron populations 1.21702 0.90579 1.03284 1.03870 1.22704 0.97661 0.83496 0.99800 1.87813 1.19179 1.27096 1.92906 1.22449 0.81125 0.97597 0.92312 1.21866 0.83789 0.82809 0.85021 1.90615 1.34751 1.38698 1.83193 1.48259 1.32344 1.45067 1.06117 1.22363 0.88506 0.89959 1.04041 1.22356 1.02225 0.96304 1.01846 1.18713 0.91157 0.91394 0.84782 1.21638 1.14883 1.02702 1.18633 0.93174 1.25875 0.95473 1.02447 0.95363 1.70054 1.24687 1.38787 1.23274 0.85427 0.79108 0.78712 0.77674 1.20538 1.19702 1.18553 1.22896 1.02081 1.00002 0.93327 1.22449 1.02477 0.92401 0.97146 1.22406 0.99544 1.00711 0.93000 1.22436 1.01924 0.90685 0.99682 0.91453 0.90063 0.90302 0.92637 0.95980 0.85249 0.92459 0.94816 0.90768 0.89050 0.98861 0.96248 0.92352 0.91671 0.90470 0.89369 0.89894 0.87930 0.92111 0.87161 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 10.28 71.98 0.74 -2.23 16 2 C 0.04 1.18 5.61 71.98 0.40 1.59 16 3 O -0.35 -10.14 6.98 -148.98 -1.04 -11.18 16 4 C 0.11 3.44 0.53 -10.82 -0.01 3.43 16 5 C 0.48 21.28 4.97 87.66 0.44 21.72 16 6 O -0.59 -32.21 15.01 -3.05 -0.05 -32.25 16 7 N -0.59 -26.83 2.30 -826.17 -1.90 -28.72 16 8 C 0.07 2.57 5.45 86.38 0.47 3.05 16 9 C -0.17 -4.89 10.06 71.98 0.72 -4.17 16 10 C 0.26 14.85 5.15 85.63 0.44 15.29 16 11 C -0.54 -32.41 9.39 25.60 0.24 -32.17 16 12 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 13 C 0.01 0.43 5.46 84.66 0.46 0.90 16 14 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 15 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 19 C -0.15 -4.23 5.74 31.69 0.18 -4.05 16 20 C -0.11 -2.15 6.91 31.91 0.22 -1.93 16 21 C -0.12 -2.36 6.83 31.67 0.22 -2.15 16 22 C -0.11 -2.75 4.29 31.32 0.13 -2.62 16 23 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.61 6.23 -2.39 -0.01 1.60 16 27 H 0.02 0.85 7.05 -2.38 -0.02 0.83 16 28 H 0.13 4.05 4.13 -8.33 -0.03 4.02 16 29 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 30 H 0.03 1.11 8.01 -2.39 -0.02 1.09 16 31 H 0.07 1.92 4.42 -2.39 -0.01 1.90 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H -0.01 -0.44 7.49 -2.39 -0.02 -0.46 16 34 H 0.02 1.13 7.94 -2.39 -0.02 1.11 16 35 H 0.27 15.52 8.31 -92.70 -0.77 14.74 16 36 H 0.06 2.31 6.79 -2.39 -0.02 2.29 16 37 H 0.08 2.13 6.14 -2.39 -0.01 2.11 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 2.24 7.73 -2.39 -0.02 2.22 16 43 H 0.07 1.89 5.96 -2.39 -0.01 1.88 16 Total: -1.00 -74.65 330.36 4.95 -69.70 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.96 Total: 15.14 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 4.67 Total: -3.35 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -1.61 Total: -86.11 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.09 Total: -43.43 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.65 4.95 -69.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330565275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.068 kcal (2) G-P(sol) polarization free energy of solvation -74.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds