Wall clock time and date at job start Mon Mar 30 2020 01:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 119.99887 * 2 1 4 4 C 1.52999 * 109.47795 * 89.99372 * 3 2 1 5 5 C 1.53000 * 109.47540 * 179.97438 * 4 3 2 6 6 C 1.53175 * 109.53913 * 65.44548 * 5 4 3 7 7 C 1.53092 * 109.16179 * 176.85000 * 6 5 4 8 8 O 1.42910 * 109.41107 * 302.39040 * 7 6 5 9 9 C 1.42900 * 114.09727 * 61.16189 * 8 7 6 10 10 C 1.53090 * 109.41229 * 298.83586 * 9 8 7 11 11 C 1.34778 * 120.00153 * 179.97438 * 2 1 3 12 12 O 1.21279 * 120.00214 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99891 * 0.02562 * 11 2 1 14 14 C 1.52996 * 109.46902 * 180.02562 * 13 11 2 15 15 C 1.50707 * 109.47237 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99792 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00154 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00180 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00159 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47148 * 90.00236 * 19 17 15 21 21 H 1.48500 * 109.47355 * 210.00376 * 19 17 15 22 22 H 1.48508 * 109.46841 * 330.00453 * 19 17 15 23 23 H 1.09000 * 109.46556 * 90.01006 * 1 2 3 24 24 H 1.09001 * 109.46965 * 210.00311 * 1 2 3 25 25 H 1.08992 * 109.47623 * 330.00284 * 1 2 3 26 26 H 1.09009 * 109.46956 * 329.99268 * 3 2 1 27 27 H 1.09005 * 109.47149 * 209.99688 * 3 2 1 28 28 H 1.09005 * 109.46474 * 59.99873 * 4 3 2 29 29 H 1.09005 * 109.47030 * 300.00389 * 4 3 2 30 30 H 1.08997 * 109.61228 * 305.22843 * 5 4 3 31 31 H 1.09006 * 109.52647 * 296.75300 * 6 5 4 32 32 H 1.08998 * 109.52537 * 56.94192 * 6 5 4 33 33 H 1.08998 * 109.48147 * 182.40843 * 7 6 5 34 34 H 1.08997 * 109.48550 * 62.37144 * 7 6 5 35 35 H 1.09003 * 109.47953 * 178.86010 * 9 8 7 36 36 H 1.08995 * 109.49265 * 58.82602 * 9 8 7 37 37 H 1.09001 * 109.52724 * 297.70937 * 10 9 8 38 38 H 1.09000 * 109.52338 * 177.51272 * 10 9 8 39 39 H 1.09002 * 109.46991 * 300.00194 * 13 11 2 40 40 H 1.09004 * 109.47103 * 60.00212 * 13 11 2 41 41 H 1.09002 * 109.47299 * 299.99813 * 14 13 11 42 42 H 1.09004 * 109.47225 * 60.00095 * 14 13 11 43 43 H 0.96997 * 120.00150 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 1.4424 5 6 3.2179 3.0353 1.4424 6 6 2.3375 4.1357 0.8421 7 6 3.0812 5.4717 0.9182 8 8 3.4181 5.7509 2.2787 9 6 4.2786 4.7800 2.8778 10 6 3.5829 3.4163 2.8804 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0018 15 6 1.6262 -4.9404 0.0024 16 1 0.5463 -4.9404 0.0016 17 6 2.3156 -6.1343 0.0031 18 7 3.6308 -6.1343 0.0037 19 14 1.3817 -7.7521 0.0032 20 1 1.1349 -8.1813 -1.3969 21 1 2.1840 -8.7868 0.7039 22 1 0.0838 -7.5744 0.7025 23 1 -0.3632 -0.0002 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5137 26 1 1.6083 2.0283 -0.5140 27 1 3.1499 1.1384 -0.5138 28 1 3.0415 0.9509 1.9563 29 1 1.4999 1.8409 1.9562 30 1 4.1273 2.9323 0.8503 31 1 2.1185 3.8996 -0.1993 32 1 1.4064 4.2046 1.4045 33 1 2.4426 6.2658 0.5315 34 1 3.9922 5.4151 0.3224 35 1 4.5024 5.0758 3.9027 36 1 5.2053 4.7143 2.3078 37 1 2.6769 3.4706 3.4839 38 1 4.2546 2.6655 3.2967 39 1 0.7584 -2.5298 0.8903 40 1 0.7591 -2.5303 -0.8897 41 1 3.0070 -3.5778 -0.8877 42 1 3.0057 -3.5770 0.8923 43 1 4.1158 -6.9743 0.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330906467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:05 Heat of formation + Delta-G solvation = -110.944325 kcal Electronic energy + Delta-G solvation = -20716.160254 eV Core-core repulsion = 17567.334189 eV Total energy + Delta-G solvation = -3148.826065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87414 -39.21659 -36.09791 -34.55218 -33.47436 -31.43297 -31.18087 -29.82187 -26.63515 -26.14738 -24.55761 -23.75350 -22.26775 -20.96192 -20.22131 -18.49664 -16.95522 -16.51446 -16.27181 -15.78662 -15.61471 -15.37138 -15.09331 -14.74974 -14.41672 -14.08321 -13.37697 -13.27236 -13.02831 -12.57744 -12.53693 -12.26973 -12.15681 -12.07252 -11.96768 -11.58698 -11.35140 -11.10197 -10.96394 -10.91444 -10.59579 -10.51633 -10.48362 -9.94230 -9.77812 -9.61423 -9.15942 -8.97002 -8.39624 -8.30658 -5.95641 -4.00066 3.23204 3.32521 3.33308 3.39622 3.42317 3.62432 4.44271 4.47248 4.49505 4.63008 4.74633 4.91711 4.98137 5.11234 5.20639 5.22227 5.31229 5.39200 5.39602 5.43845 5.45130 5.52451 5.61279 5.64616 5.67661 5.76699 5.80901 5.85565 5.99228 6.15965 6.22557 6.24839 6.26835 6.78732 6.91338 6.92754 7.74355 7.75831 7.87148 8.07850 8.39250 8.76501 9.08501 9.63422 11.15349 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041520 B = 0.003008 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.216765 B = 9307.409319 C = 9655.845379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.631 5.631 3 C 0.115 3.885 4 C -0.127 4.127 5 C -0.087 4.087 6 C -0.152 4.152 7 C 0.060 3.940 8 O -0.386 6.386 9 C 0.060 3.940 10 C -0.151 4.151 11 C 0.510 3.490 12 O -0.533 6.533 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 22.681 2.526 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C -0.008 4.008 4 C -0.166 4.166 5 C -0.106 4.106 6 C -0.190 4.190 7 C -0.017 4.017 8 O -0.305 6.305 9 C -0.016 4.016 10 C -0.189 4.189 11 C 0.300 3.700 12 O -0.408 6.408 13 C -0.168 4.168 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.999 22.701 2.618 23.199 hybrid contribution -0.500 -1.192 -0.148 1.301 sum -4.499 21.509 2.471 22.113 Atomic orbital electron populations 1.21721 0.79937 1.02945 1.01523 1.48082 1.06749 1.06028 1.75849 1.21402 0.97874 0.85030 0.96447 1.21970 1.00428 0.96322 0.97872 1.21154 0.98864 0.94361 0.96270 1.22312 0.99627 0.95126 1.01924 1.22590 0.98788 0.97049 0.83275 1.87916 1.68249 1.47975 1.26367 1.22589 0.92218 0.88300 0.98525 1.22239 1.01820 0.97562 0.97232 1.21594 0.88454 0.85599 0.74359 1.90653 1.14418 1.87301 1.48454 1.21884 1.00685 0.92029 1.02212 1.18904 0.93190 0.89422 0.98550 1.21223 0.92908 0.91031 1.51328 0.92636 1.25027 0.94828 0.99222 0.95326 1.70000 1.06055 1.26564 1.50238 0.86594 0.79772 0.83528 0.78064 1.20671 1.21216 1.19892 0.92954 0.90538 0.91811 0.91203 0.90194 0.91114 0.91945 0.90770 0.90653 0.91004 0.89037 0.93213 0.88972 0.93174 0.91043 0.90622 0.90330 0.90346 0.95884 0.95889 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.24 59.85 0.61 1.51 16 2 N -0.63 -9.31 2.87 -181.57 -0.52 -9.84 16 3 C 0.12 1.44 5.17 -4.05 -0.02 1.42 16 4 C -0.13 -1.46 5.01 -26.73 -0.13 -1.59 16 5 C -0.09 -0.83 2.27 -90.44 -0.21 -1.04 16 6 C -0.15 -1.23 5.10 -26.59 -0.14 -1.37 16 7 C 0.06 0.48 6.84 37.21 0.25 0.74 16 8 O -0.39 -3.93 10.77 -35.23 -0.38 -4.31 16 9 C 0.06 0.52 6.84 37.20 0.25 0.78 16 10 C -0.15 -1.37 5.42 -26.59 -0.14 -1.51 16 11 C 0.51 10.10 7.67 -10.98 -0.08 10.01 16 12 O -0.53 -12.73 15.56 5.56 0.09 -12.64 16 13 C -0.13 -2.66 4.19 -27.88 -0.12 -2.78 16 14 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 15 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 25 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 26 H 0.07 0.68 6.59 -51.92 -0.34 0.34 16 27 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.54 6.75 -51.93 -0.35 0.19 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.49 7.40 -51.93 -0.38 1.11 16 40 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -34.28 343.54 -7.84 -42.12 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.67 Total: -3.63 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.25 Total: -6.72 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.21 Total: -36.70 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.29 Total: -16.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.28 -7.84 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330906467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.825 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds