Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 119.99887 * 2 1 4 4 C 1.52999 * 109.47795 * 89.99372 * 3 2 1 5 5 C 1.53000 * 109.47540 * 179.97438 * 4 3 2 6 6 C 1.53175 * 109.53913 * 65.44548 * 5 4 3 7 7 C 1.53092 * 109.16179 * 176.85000 * 6 5 4 8 8 O 1.42910 * 109.41107 * 302.39040 * 7 6 5 9 9 C 1.42900 * 114.09727 * 61.16189 * 8 7 6 10 10 C 1.53090 * 109.41229 * 298.83586 * 9 8 7 11 11 C 1.34778 * 120.00153 * 179.97438 * 2 1 3 12 12 O 1.21279 * 120.00214 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99891 * 0.02562 * 11 2 1 14 14 C 1.52996 * 109.46902 * 180.02562 * 13 11 2 15 15 C 1.50707 * 109.47237 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99792 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00154 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00180 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00159 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47148 * 90.00236 * 19 17 15 21 21 H 1.48500 * 109.47355 * 210.00376 * 19 17 15 22 22 H 1.48508 * 109.46841 * 330.00453 * 19 17 15 23 23 H 1.09000 * 109.46556 * 90.01006 * 1 2 3 24 24 H 1.09001 * 109.46965 * 210.00311 * 1 2 3 25 25 H 1.08992 * 109.47623 * 330.00284 * 1 2 3 26 26 H 1.09009 * 109.46956 * 329.99268 * 3 2 1 27 27 H 1.09005 * 109.47149 * 209.99688 * 3 2 1 28 28 H 1.09005 * 109.46474 * 59.99873 * 4 3 2 29 29 H 1.09005 * 109.47030 * 300.00389 * 4 3 2 30 30 H 1.08997 * 109.61228 * 305.22843 * 5 4 3 31 31 H 1.09006 * 109.52647 * 296.75300 * 6 5 4 32 32 H 1.08998 * 109.52537 * 56.94192 * 6 5 4 33 33 H 1.08998 * 109.48147 * 182.40843 * 7 6 5 34 34 H 1.08997 * 109.48550 * 62.37144 * 7 6 5 35 35 H 1.09003 * 109.47953 * 178.86010 * 9 8 7 36 36 H 1.08995 * 109.49265 * 58.82602 * 9 8 7 37 37 H 1.09001 * 109.52724 * 297.70937 * 10 9 8 38 38 H 1.09000 * 109.52338 * 177.51272 * 10 9 8 39 39 H 1.09002 * 109.46991 * 300.00194 * 13 11 2 40 40 H 1.09004 * 109.47103 * 60.00212 * 13 11 2 41 41 H 1.09002 * 109.47299 * 299.99813 * 14 13 11 42 42 H 1.09004 * 109.47225 * 60.00095 * 14 13 11 43 43 H 0.96997 * 120.00150 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 1.4424 5 6 3.2179 3.0353 1.4424 6 6 2.3375 4.1357 0.8421 7 6 3.0812 5.4717 0.9182 8 8 3.4181 5.7509 2.2787 9 6 4.2786 4.7800 2.8778 10 6 3.5829 3.4163 2.8804 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0018 15 6 1.6262 -4.9404 0.0024 16 1 0.5463 -4.9404 0.0016 17 6 2.3156 -6.1343 0.0031 18 7 3.6308 -6.1343 0.0037 19 14 1.3817 -7.7521 0.0032 20 1 1.1349 -8.1813 -1.3969 21 1 2.1840 -8.7868 0.7039 22 1 0.0838 -7.5744 0.7025 23 1 -0.3632 -0.0002 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5137 26 1 1.6083 2.0283 -0.5140 27 1 3.1499 1.1384 -0.5138 28 1 3.0415 0.9509 1.9563 29 1 1.4999 1.8409 1.9562 30 1 4.1273 2.9323 0.8503 31 1 2.1185 3.8996 -0.1993 32 1 1.4064 4.2046 1.4045 33 1 2.4426 6.2658 0.5315 34 1 3.9922 5.4151 0.3224 35 1 4.5024 5.0758 3.9027 36 1 5.2053 4.7143 2.3078 37 1 2.6769 3.4706 3.4839 38 1 4.2546 2.6655 3.2967 39 1 0.7584 -2.5298 0.8903 40 1 0.7591 -2.5303 -0.8897 41 1 3.0070 -3.5778 -0.8877 42 1 3.0057 -3.5770 0.8923 43 1 4.1158 -6.9743 0.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330906467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = -133.270278 kcal Electronic energy + Delta-G solvation = -20717.128380 eV Core-core repulsion = 17567.334189 eV Total energy + Delta-G solvation = -3149.794191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01063 -40.26126 -37.24667 -35.66116 -35.52539 -33.09578 -32.05306 -30.93723 -27.95764 -27.58666 -25.84135 -24.47247 -23.63886 -22.42349 -20.97320 -19.94305 -18.79455 -17.62393 -17.30073 -16.97244 -16.74962 -16.70612 -16.39627 -15.93162 -15.56829 -15.10829 -14.69076 -14.43640 -14.23267 -14.09819 -13.74030 -13.38389 -13.29212 -13.24264 -13.02163 -12.91037 -12.80491 -12.48113 -12.29407 -12.16972 -11.92959 -11.79622 -11.59282 -11.31435 -11.30532 -11.19869 -10.68625 -10.57722 -10.46789 -9.59206 -8.18771 -6.33264 1.41499 1.44553 1.55473 1.69256 2.11003 2.42924 2.98466 3.14044 3.66341 3.71342 3.81068 3.90476 4.07629 4.20169 4.26433 4.34327 4.42728 4.45944 4.46849 4.51109 4.53966 4.61775 4.74798 4.78433 4.80554 4.82768 4.92379 4.94274 5.04375 5.09840 5.12316 5.15639 5.26763 5.43416 5.47407 5.61114 5.68346 5.84115 6.16457 6.27019 6.40691 6.85260 7.28107 7.37296 8.94057 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041520 B = 0.003008 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.216765 B = 9307.409319 C = 9655.845379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.619 5.619 3 C 0.113 3.887 4 C -0.117 4.117 5 C -0.086 4.086 6 C -0.145 4.145 7 C 0.054 3.946 8 O -0.404 6.404 9 C 0.060 3.940 10 C -0.149 4.149 11 C 0.505 3.495 12 O -0.590 6.590 13 C -0.116 4.116 14 C 0.043 3.957 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.254 1.254 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.101 0.899 41 H -0.020 1.020 42 H -0.020 1.020 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 23.709 2.352 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.352 5.352 3 C -0.009 4.009 4 C -0.156 4.156 5 C -0.105 4.105 6 C -0.183 4.183 7 C -0.022 4.022 8 O -0.323 6.323 9 C -0.017 4.017 10 C -0.187 4.187 11 C 0.295 3.705 12 O -0.470 6.470 13 C -0.155 4.155 14 C 0.006 3.994 15 C -0.581 4.581 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.178 1.178 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.120 0.880 41 H -0.002 1.002 42 H -0.002 1.002 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.215 23.782 2.443 24.972 hybrid contribution 0.485 -1.429 -0.097 1.512 sum -6.730 22.353 2.346 23.462 Atomic orbital electron populations 1.22081 0.76858 1.04743 1.03332 1.48067 1.08643 1.05124 1.73353 1.21598 0.97318 0.84686 0.97298 1.21854 1.00732 0.96226 0.96779 1.21119 0.98669 0.94009 0.96667 1.22270 0.99200 0.94272 1.02552 1.22753 0.99323 0.97584 0.82519 1.87893 1.68490 1.48496 1.27406 1.22645 0.92053 0.87703 0.99261 1.22214 1.01790 0.97817 0.96898 1.21410 0.87690 0.86930 0.74475 1.90633 1.16700 1.88173 1.51528 1.21638 0.99247 0.90307 1.04357 1.18685 0.93685 0.92599 0.94477 1.21712 0.93999 0.91560 1.50810 0.90548 1.26164 0.95738 1.04031 0.94596 1.70184 1.08369 1.27829 1.51469 0.85303 0.78678 0.77586 0.78566 1.19638 1.21181 1.17801 0.91056 0.90458 0.88448 0.87188 0.92834 0.94741 0.90439 0.91741 0.89291 0.90584 0.87350 0.92931 0.87863 0.92927 0.90989 0.91306 0.88032 0.88035 1.00157 1.00190 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 10.24 127.77 1.31 2.59 16 2 N -0.62 -17.32 2.87 -846.76 -2.43 -19.75 16 3 C 0.11 2.68 5.17 86.38 0.45 3.13 16 4 C -0.12 -2.59 5.01 30.59 0.15 -2.44 16 5 C -0.09 -1.56 2.27 -10.68 -0.02 -1.58 16 6 C -0.15 -1.98 5.10 30.68 0.16 -1.83 16 7 C 0.05 0.77 6.84 72.01 0.49 1.26 16 8 O -0.40 -7.56 10.77 -148.98 -1.60 -9.17 16 9 C 0.06 0.98 6.84 72.01 0.49 1.47 16 10 C -0.15 -2.64 5.42 30.68 0.17 -2.47 16 11 C 0.50 20.34 7.67 87.66 0.67 21.01 16 12 O -0.59 -29.93 15.56 -3.03 -0.05 -29.98 16 13 C -0.12 -4.79 4.19 29.85 0.13 -4.67 16 14 C 0.04 2.46 4.26 29.85 0.13 2.59 16 15 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 16 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 17 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 18 N -0.94 -60.25 13.29 21.44 0.28 -59.97 16 19 Si 0.98 44.51 29.54 68.60 2.03 46.54 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.42 6.44 -2.39 -0.02 1.40 16 25 H 0.10 1.16 8.07 -2.39 -0.02 1.14 16 26 H 0.11 1.75 6.59 -2.38 -0.02 1.74 16 27 H 0.05 1.58 7.42 -2.38 -0.02 1.56 16 28 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 0.97 6.75 -2.38 -0.02 0.96 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 3.71 7.40 -2.39 -0.02 3.69 16 40 H 0.10 3.70 8.11 -2.39 -0.02 3.69 16 41 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 42 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -78.96 343.54 3.99 -74.97 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.95 Total: 9.36 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.81 Total: -12.00 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -2.15 Total: -79.72 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.65 Total: -39.15 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -78.96 3.99 -74.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330906467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.301 kcal (2) G-P(sol) polarization free energy of solvation -78.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds