Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.50338 * 304.93343 * 5 4 3 7 7 C 1.53043 * 109.49813 * 184.83540 * 5 4 3 8 8 C 1.53042 * 109.53879 * 178.68368 * 7 5 4 9 9 C 1.53189 * 109.31022 * 61.36620 * 8 7 5 10 10 N 1.46922 * 108.78173 * 305.36449 * 9 8 7 11 11 C 1.34773 * 120.63411 * 233.59183 * 10 9 8 12 12 O 1.21280 * 119.99902 * 180.02562 * 11 10 9 13 13 C 1.50704 * 119.99860 * 0.02562 * 11 10 9 14 14 C 1.53001 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47164 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00180 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00110 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00038 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00331 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46953 * 59.99877 * 19 17 15 21 21 H 1.48495 * 109.47202 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46934 * 300.00268 * 19 17 15 23 23 C 1.46934 * 118.73511 * 53.60496 * 10 9 8 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 30 30 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 31 31 H 1.08994 * 109.46005 * 298.70515 * 7 5 4 32 32 H 1.08997 * 109.45870 * 58.66403 * 7 5 4 33 33 H 1.08999 * 109.49706 * 301.41475 * 8 7 5 34 34 H 1.08997 * 109.49437 * 181.31716 * 8 7 5 35 35 H 1.09003 * 109.58500 * 185.57308 * 9 8 7 36 36 H 1.09006 * 109.58823 * 65.15489 * 9 8 7 37 37 H 1.09003 * 109.46862 * 299.99684 * 13 11 10 38 38 H 1.08992 * 109.47296 * 60.00046 * 13 11 10 39 39 H 1.09006 * 109.46305 * 299.99819 * 14 13 11 40 40 H 1.08996 * 109.47150 * 59.99144 * 14 13 11 41 41 H 0.97001 * 120.00029 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58367 * 186.60963 * 23 10 9 43 43 H 1.09003 * 109.69820 * 66.25673 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3509 3.4413 -0.8430 7 6 5.3459 3.0614 -0.1211 8 6 5.7388 4.5402 -0.1549 9 6 5.3019 5.2104 1.1515 10 7 3.8656 4.9721 1.3481 11 6 3.0216 6.0010 1.5615 12 8 1.8381 5.7910 1.7229 13 6 3.5487 7.4124 1.5995 14 6 2.3929 8.3816 1.8557 15 6 2.9200 9.7929 1.8943 16 1 3.9740 9.9798 1.7510 17 6 2.0567 10.8454 2.1127 18 7 0.7731 10.6179 2.2867 19 14 2.7101 12.5948 2.1613 20 1 3.3510 12.9201 0.8617 21 1 1.5881 13.5356 2.4086 22 1 3.7106 12.7193 3.2515 23 6 3.3667 3.5906 1.3081 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8332 0.9769 0.8908 30 1 3.8340 0.9766 -0.8891 31 1 5.8183 2.5797 0.7348 32 1 5.6774 2.5765 -1.0392 33 1 5.2469 5.0281 -0.9964 34 1 6.8197 4.6269 -0.2646 35 1 5.4898 6.2825 1.0927 36 1 5.8605 4.7847 1.9852 37 1 4.2835 7.5043 2.3993 38 1 4.0184 7.6506 0.6453 39 1 1.6577 8.2896 1.0561 40 1 1.9234 8.1431 2.8100 41 1 0.1658 11.3585 2.4407 42 1 2.2776 3.5940 1.3526 43 1 3.7653 3.0313 2.1546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330911548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -108.801590 kcal Electronic energy + Delta-G solvation = -20932.281430 eV Core-core repulsion = 17783.548281 eV Total energy + Delta-G solvation = -3148.733149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92162 -38.33619 -36.97051 -33.58591 -33.28297 -31.89647 -31.10358 -30.47444 -26.60674 -25.68163 -24.60721 -22.98169 -22.18988 -21.53773 -20.12896 -18.39908 -16.97376 -16.79128 -16.43263 -15.83500 -15.30787 -15.15127 -14.76077 -14.45939 -14.34818 -13.94106 -13.41233 -13.23938 -13.12682 -12.83543 -12.52213 -12.22700 -12.04672 -11.98833 -11.62187 -11.36748 -11.16020 -11.11358 -10.96062 -10.87155 -10.72699 -10.59002 -10.51797 -9.90135 -9.77349 -9.55017 -9.12019 -8.91103 -8.33674 -8.25517 -5.91814 -3.96291 3.29698 3.36744 3.37042 3.41679 3.43581 3.46434 4.50129 4.63108 4.64040 4.73527 4.83155 4.90643 4.95282 5.12824 5.13707 5.24517 5.34234 5.37372 5.40904 5.42736 5.47490 5.53576 5.60678 5.71339 5.75050 5.80914 5.90556 5.94911 5.99767 6.21268 6.25034 6.28011 6.29099 6.82635 6.97753 7.05375 7.78528 7.85751 7.92045 8.12371 8.43236 8.84331 9.12278 9.66852 11.19125 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.003668 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.319436 B = 7632.339758 C = 8562.207141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.384 6.384 4 C 0.071 3.929 5 C -0.101 4.101 6 H 0.083 0.917 7 C -0.111 4.111 8 C -0.134 4.134 9 C 0.107 3.893 10 N -0.626 5.626 11 C 0.512 3.488 12 O -0.532 6.532 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.121 3.879 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.097 0.903 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.047 -21.462 -5.441 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.303 6.303 4 C -0.006 4.006 5 C -0.121 4.121 6 H 0.102 0.898 7 C -0.148 4.148 8 C -0.173 4.173 9 C -0.016 4.016 10 N -0.362 5.362 11 C 0.302 3.698 12 O -0.407 6.407 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.002 4.002 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.116 0.884 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.079 -21.298 -5.303 23.751 hybrid contribution 0.619 0.625 -0.020 0.880 sum 9.698 -20.673 -5.323 23.447 Atomic orbital electron populations 1.21749 0.93692 1.02038 1.03550 1.22438 0.95770 0.83927 0.99705 1.87975 1.20885 1.26129 1.95333 1.22474 0.81542 0.96582 0.99992 1.21531 0.96122 0.94236 1.00199 0.89822 1.21485 0.94310 0.97008 1.02023 1.21909 1.01230 0.95477 0.98639 1.21695 0.81208 1.02007 0.96722 1.48301 1.07909 1.06435 1.73548 1.21572 0.86087 0.87568 0.74568 1.90662 1.16406 1.85328 1.48320 1.21873 1.02643 0.90057 1.02198 1.18900 0.91599 0.91294 0.98257 1.21185 0.94064 0.91553 1.49715 0.92699 1.25026 0.94853 0.99122 0.95384 1.69994 1.02533 1.31649 1.48649 0.86657 0.78348 0.84472 0.78466 1.20272 1.21301 1.20269 1.21437 1.01800 0.81773 0.95208 0.91279 0.91576 0.91765 0.93691 0.93567 0.93284 0.93260 0.91674 0.91702 0.91175 0.90610 0.88952 0.91840 0.90370 0.90351 0.95844 0.95851 0.92917 0.88430 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.38 -4.73 9.99 -35.23 -0.35 -5.08 16 4 C 0.07 0.71 5.32 37.16 0.20 0.90 16 5 C -0.10 -1.15 2.58 -90.50 -0.23 -1.39 16 6 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.11 -0.97 5.17 -26.69 -0.14 -1.11 16 8 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 9 C 0.11 1.25 6.34 -3.71 -0.02 1.23 16 10 N -0.63 -9.89 2.97 -172.76 -0.51 -10.40 16 11 C 0.51 10.61 7.70 -10.98 -0.08 10.53 16 12 O -0.53 -13.38 15.40 5.56 0.09 -13.29 16 13 C -0.13 -2.71 3.99 -27.88 -0.11 -2.82 16 14 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 15 C -0.53 -15.21 9.11 -34.45 -0.31 -15.53 16 16 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.89 13.29 55.43 0.74 -27.15 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.12 1.73 5.55 -3.71 -0.02 1.71 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.09 5.93 -51.93 -0.31 0.79 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 38 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.10 1.72 6.85 -51.93 -0.36 1.36 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -34.87 345.64 -8.11 -42.98 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -7.78 Total: -3.61 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.48 Total: -5.55 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.22 Total: -37.56 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.27 Total: -18.37 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.87 -8.11 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330911548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.823 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds