Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.50338 * 304.93343 * 5 4 3 7 7 C 1.53043 * 109.49813 * 184.83540 * 5 4 3 8 8 C 1.53042 * 109.53879 * 178.68368 * 7 5 4 9 9 C 1.53189 * 109.31022 * 61.36620 * 8 7 5 10 10 N 1.46922 * 108.78173 * 305.36449 * 9 8 7 11 11 C 1.34773 * 120.63411 * 233.59183 * 10 9 8 12 12 O 1.21280 * 119.99902 * 180.02562 * 11 10 9 13 13 C 1.50704 * 119.99860 * 0.02562 * 11 10 9 14 14 C 1.53001 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47164 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00180 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00110 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00038 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00331 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46953 * 59.99877 * 19 17 15 21 21 H 1.48495 * 109.47202 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46934 * 300.00268 * 19 17 15 23 23 C 1.46934 * 118.73511 * 53.60496 * 10 9 8 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 30 30 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 31 31 H 1.08994 * 109.46005 * 298.70515 * 7 5 4 32 32 H 1.08997 * 109.45870 * 58.66403 * 7 5 4 33 33 H 1.08999 * 109.49706 * 301.41475 * 8 7 5 34 34 H 1.08997 * 109.49437 * 181.31716 * 8 7 5 35 35 H 1.09003 * 109.58500 * 185.57308 * 9 8 7 36 36 H 1.09006 * 109.58823 * 65.15489 * 9 8 7 37 37 H 1.09003 * 109.46862 * 299.99684 * 13 11 10 38 38 H 1.08992 * 109.47296 * 60.00046 * 13 11 10 39 39 H 1.09006 * 109.46305 * 299.99819 * 14 13 11 40 40 H 1.08996 * 109.47150 * 59.99144 * 14 13 11 41 41 H 0.97001 * 120.00029 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58367 * 186.60963 * 23 10 9 43 43 H 1.09003 * 109.69820 * 66.25673 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3509 3.4413 -0.8430 7 6 5.3459 3.0614 -0.1211 8 6 5.7388 4.5402 -0.1549 9 6 5.3019 5.2104 1.1515 10 7 3.8656 4.9721 1.3481 11 6 3.0216 6.0010 1.5615 12 8 1.8381 5.7910 1.7229 13 6 3.5487 7.4124 1.5995 14 6 2.3929 8.3816 1.8557 15 6 2.9200 9.7929 1.8943 16 1 3.9740 9.9798 1.7510 17 6 2.0567 10.8454 2.1127 18 7 0.7731 10.6179 2.2867 19 14 2.7101 12.5948 2.1613 20 1 3.3510 12.9201 0.8617 21 1 1.5881 13.5356 2.4086 22 1 3.7106 12.7193 3.2515 23 6 3.3667 3.5906 1.3081 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8332 0.9769 0.8908 30 1 3.8340 0.9766 -0.8891 31 1 5.8183 2.5797 0.7348 32 1 5.6774 2.5765 -1.0392 33 1 5.2469 5.0281 -0.9964 34 1 6.8197 4.6269 -0.2646 35 1 5.4898 6.2825 1.0927 36 1 5.8605 4.7847 1.9852 37 1 4.2835 7.5043 2.3993 38 1 4.0184 7.6506 0.6453 39 1 1.6577 8.2896 1.0561 40 1 1.9234 8.1431 2.8100 41 1 0.1658 11.3585 2.4407 42 1 2.2776 3.5940 1.3526 43 1 3.7653 3.0313 2.1546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330911548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -132.059262 kcal Electronic energy + Delta-G solvation = -20933.289958 eV Core-core repulsion = 17783.548281 eV Total energy + Delta-G solvation = -3149.741678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24307 -39.37870 -38.11969 -35.61635 -34.56438 -32.97338 -32.76115 -31.50493 -28.30318 -26.67595 -26.13220 -23.73216 -23.40373 -23.08188 -21.20870 -19.80952 -18.82493 -17.66814 -17.57322 -17.31929 -16.65211 -16.55760 -16.36863 -15.60575 -15.49473 -15.02984 -14.65514 -14.36563 -14.24294 -14.11805 -13.82022 -13.70163 -13.30036 -13.19112 -12.94929 -12.77503 -12.53370 -12.39597 -12.10971 -11.98278 -11.92640 -11.84521 -11.66319 -11.49753 -11.44877 -11.32415 -10.65157 -10.56493 -10.52929 -9.59882 -8.17733 -6.32729 1.41805 1.47140 1.54846 1.67864 2.06690 2.43610 2.73511 3.14760 3.68000 3.79844 3.83779 4.05457 4.10626 4.15715 4.21097 4.30144 4.42705 4.44855 4.49057 4.49583 4.52624 4.61542 4.64843 4.71864 4.83181 4.90021 4.91920 5.00367 5.01172 5.12827 5.15488 5.24295 5.25426 5.45607 5.47233 5.60425 5.65549 5.84135 6.16509 6.33312 6.43070 6.85392 7.27227 7.37719 8.95040 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.003668 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.319436 B = 7632.339758 C = 8562.207141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 O -0.422 6.422 4 C 0.071 3.929 5 C -0.095 4.095 6 H 0.055 0.945 7 C -0.104 4.104 8 C -0.130 4.130 9 C 0.095 3.905 10 N -0.614 5.614 11 C 0.505 3.495 12 O -0.594 6.594 13 C -0.113 4.113 14 C 0.043 3.957 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.977 3.023 20 H -0.261 1.261 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.119 3.881 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.102 0.898 39 H -0.022 1.022 40 H -0.020 1.020 41 H 0.263 0.737 42 H 0.053 0.947 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.056 -22.235 -5.994 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.342 6.342 4 C -0.006 4.006 5 C -0.115 4.115 6 H 0.074 0.926 7 C -0.142 4.142 8 C -0.168 4.168 9 C -0.027 4.027 10 N -0.347 5.347 11 C 0.296 3.704 12 O -0.475 6.475 13 C -0.153 4.153 14 C 0.006 3.994 15 C -0.581 4.581 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.800 3.200 20 H -0.186 1.186 21 H -0.214 1.214 22 H -0.185 1.185 23 C -0.004 4.004 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.120 0.880 39 H -0.004 1.004 40 H -0.002 1.002 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.170 -22.116 -5.875 26.402 hybrid contribution -0.642 0.770 0.153 1.014 sum 12.528 -21.346 -5.722 25.403 Atomic orbital electron populations 1.21796 0.94004 1.03264 1.02108 1.22620 0.95668 0.82876 1.01163 1.87952 1.22483 1.28161 1.95631 1.22582 0.80648 0.95504 1.01871 1.21498 0.98271 0.94837 0.96888 0.92632 1.21499 0.91648 0.96867 1.04142 1.21920 1.03077 0.95489 0.96338 1.22128 0.78321 1.02876 0.99332 1.48310 1.09358 1.05945 1.71112 1.21486 0.85726 0.88575 0.74634 1.90638 1.19047 1.86153 1.51635 1.21623 1.00347 0.89045 1.04257 1.18683 0.92861 0.93552 0.94331 1.21673 0.95228 0.91921 1.49316 0.90395 1.26193 0.94925 1.04891 0.94584 1.70191 1.04465 1.33399 1.49854 0.85328 0.77790 0.77353 0.79489 1.18569 1.21360 1.18505 1.21540 0.99474 0.81251 0.98129 0.88707 0.93327 0.92891 0.91896 0.92229 0.91499 0.91012 0.89582 0.89421 0.92765 0.87189 0.88908 0.89053 0.87780 0.87997 1.00354 1.00187 0.92845 0.92827 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.05 0.91 6.66 71.98 0.48 1.39 16 3 O -0.42 -10.40 9.99 -148.98 -1.49 -11.89 16 4 C 0.07 1.26 5.32 71.98 0.38 1.65 16 5 C -0.10 -2.05 2.58 -10.72 -0.03 -2.08 16 6 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 7 C -0.10 -1.41 5.17 30.62 0.16 -1.26 16 8 C -0.13 -1.99 6.08 30.67 0.19 -1.80 16 9 C 0.09 1.94 6.34 86.36 0.55 2.49 16 10 N -0.61 -19.21 2.97 -818.88 -2.43 -21.64 16 11 C 0.51 21.84 7.70 87.66 0.67 22.51 16 12 O -0.59 -32.37 15.40 -3.03 -0.05 -32.41 16 13 C -0.11 -4.86 3.99 29.85 0.12 -4.74 16 14 C 0.04 2.54 4.26 29.85 0.13 2.66 16 15 C -0.54 -31.77 9.11 25.60 0.23 -31.53 16 16 H 0.08 4.10 7.74 -2.91 -0.02 4.07 16 17 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 18 N -0.94 -61.18 13.29 21.45 0.28 -60.89 16 19 Si 0.98 44.98 29.54 68.60 2.03 47.00 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 23 C 0.12 3.40 5.55 86.36 0.48 3.88 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.91 5.93 -2.39 -0.01 1.90 16 36 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.10 3.90 7.94 -2.39 -0.02 3.88 16 38 H 0.10 3.87 7.69 -2.39 -0.02 3.85 16 39 H -0.02 -1.46 8.10 -2.38 -0.02 -1.48 16 40 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 41 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 42 H 0.05 2.03 6.85 -2.39 -0.02 2.01 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -82.81 345.64 3.85 -78.95 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.95 Total: 9.72 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.56 Total: -8.84 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.15 Total: -82.53 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -1.53 Total: -44.31 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -82.81 3.85 -78.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330911548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.106 kcal (2) G-P(sol) polarization free energy of solvation -82.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds