Wall clock time and date at job start Mon Mar 30 2020 01:20:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.42906 * 109.46701 * 2 1
4 4 C 1.42901 * 113.99616 * 179.97438 * 3 2 1
5 5 C 1.52997 * 109.46846 * 179.97438 * 4 3 2
6 6 H 1.08997 * 109.50229 * 54.93327 * 5 4 3
7 7 C 1.53042 * 109.49679 * 175.00488 * 5 4 3
8 8 C 1.53040 * 109.53725 * 181.35220 * 7 5 4
9 9 C 1.53202 * 109.31031 * 298.62885 * 8 7 5
10 10 N 1.46925 * 108.77226 * 54.63723 * 9 8 7
11 11 C 1.34777 * 120.62765 * 126.37060 * 10 9 8
12 12 O 1.21288 * 119.99593 * 179.97438 * 11 10 9
13 13 C 1.50697 * 120.00369 * 359.97438 * 11 10 9
14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10
15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11
16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13
17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13
18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14
20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15
21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15
22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15
23 23 C 1.46924 * 118.74023 * 306.64001 * 10 9 8
24 24 H 1.09001 * 109.47329 * 60.00931 * 1 2 3
25 25 H 1.09012 * 109.47019 * 180.02562 * 1 2 3
26 26 H 1.08994 * 109.47647 * 299.99937 * 1 2 3
27 27 H 1.08998 * 109.47176 * 240.00115 * 2 1 3
28 28 H 1.09000 * 109.47084 * 119.99814 * 2 1 3
29 29 H 1.09004 * 109.47328 * 60.00127 * 4 3 2
30 30 H 1.08996 * 109.47593 * 299.99686 * 4 3 2
31 31 H 1.08996 * 109.46319 * 61.32756 * 7 5 4
32 32 H 1.08999 * 109.45482 * 301.36449 * 7 5 4
33 33 H 1.09000 * 109.49910 * 178.68391 * 8 7 5
34 34 H 1.08998 * 109.52910 * 58.59299 * 8 7 5
35 35 H 1.08993 * 109.58416 * 294.84692 * 9 8 7
36 36 H 1.08994 * 109.58567 * 174.42316 * 9 8 7
37 37 H 1.09002 * 109.47120 * 59.99760 * 13 11 10
38 38 H 1.08998 * 109.46862 * 300.00562 * 13 11 10
39 39 H 1.09002 * 109.47153 * 59.99773 * 14 13 11
40 40 H 1.09001 * 109.46832 * 299.99964 * 14 13 11
41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15
42 42 H 1.08998 * 109.58438 * 173.14533 * 23 10 9
43 43 H 1.08996 * 109.59050 * 293.57622 * 23 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3474 0.0000
4 6 3.4308 1.4602 0.0006
5 6 3.8252 2.9385 -0.0001
6 1 3.3483 3.4427 0.8403
7 6 5.3454 3.0616 0.1261
8 6 5.7382 4.5403 0.1594
9 6 5.3060 5.2089 -1.1495
10 7 3.8704 4.9702 -1.3509
11 6 3.0271 5.9989 -1.5678
12 8 1.8440 5.7887 -1.7331
13 6 3.5540 7.4103 -1.6050
14 6 2.3988 8.3793 -1.8645
15 6 2.9257 9.7907 -1.9011
16 1 3.9791 9.9779 -1.7544
17 6 2.0629 10.8431 -2.1229
18 7 0.7801 10.6152 -2.3021
19 14 2.7161 12.5925 -2.1690
20 1 3.1023 12.9402 -3.5601
21 1 1.6618 13.5272 -1.6997
22 1 3.9035 12.7011 -1.2839
23 6 3.3706 3.5893 -1.3053
24 1 -0.3634 0.5137 -0.8901
25 1 -0.3634 -1.0278 0.0005
26 1 -0.3634 0.5138 0.8899
27 1 1.8933 -0.5138 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 3.8340 0.9766 -0.8892
30 1 3.8333 0.9769 0.8908
31 1 5.8210 2.5786 -0.7275
32 1 5.6737 2.5779 1.0461
33 1 6.8188 4.6273 0.2728
34 1 5.2436 5.0299 0.9984
35 1 5.8676 4.7821 -1.9805
36 1 5.4936 6.2810 -1.0915
37 1 4.2916 7.5018 -2.4023
38 1 4.0205 7.6492 -0.6494
39 1 1.6615 8.2876 -1.0669
40 1 1.9319 8.1405 -2.8201
41 1 0.1731 11.3556 -2.4577
42 1 2.2815 3.5933 -1.3500
43 1 3.7710 3.0277 -2.1492
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330911549.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:20:11
Heat of formation + Delta-G solvation = -108.851973 kcal
Electronic energy + Delta-G solvation = -20933.186255 eV
Core-core repulsion = 17784.450921 eV
Total energy + Delta-G solvation = -3148.735334 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.93232 -38.33871 -36.97616 -33.59050 -33.28599 -31.89935 -31.10724 -30.48055
-26.60888 -25.68315 -24.61476 -22.98255 -22.19039 -21.54418 -20.12604 -18.40002
-16.97526 -16.79357 -16.43396 -15.83809 -15.31043 -15.15313 -14.75857 -14.46179
-14.34547 -13.94615 -13.41221 -13.24341 -13.12707 -12.83805 -12.52481 -12.23071
-12.05146 -11.98920 -11.62076 -11.36867 -11.16082 -11.11264 -10.96085 -10.88960
-10.72496 -10.57912 -10.50964 -9.90637 -9.77470 -9.55135 -9.11258 -8.90896
-8.33911 -8.25821 -5.92100 -3.96413 3.29347 3.35729 3.36978 3.41928
3.44469 3.46455 4.50040 4.62977 4.64320 4.73213 4.83108 4.90563
4.95220 5.12846 5.13666 5.24504 5.34373 5.37331 5.40820 5.42629
5.47632 5.53480 5.60750 5.71301 5.74994 5.80920 5.90642 5.94859
5.99722 6.21394 6.24921 6.27955 6.29078 6.82585 6.97703 7.05258
7.78782 7.85680 7.91934 8.12190 8.43129 8.84275 9.12337 9.66764
11.18894
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.025051 B = 0.003668 C = 0.003270
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.449607 B = 7632.382838 C = 8561.730816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.058 3.942
3 O -0.384 6.384
4 C 0.072 3.928
5 C -0.102 4.102
6 H 0.083 0.917
7 C -0.111 4.111
8 C -0.134 4.134
9 C 0.107 3.893
10 N -0.626 5.626
11 C 0.512 3.488
12 O -0.532 6.532
13 C -0.128 4.128
14 C 0.037 3.963
15 C -0.526 4.526
16 H 0.055 0.945
17 C 0.057 3.943
18 N -0.889 5.889
19 Si 0.893 3.107
20 H -0.281 1.281
21 H -0.287 1.287
22 H -0.274 1.274
23 C 0.121 3.879
24 H 0.065 0.935
25 H 0.068 0.932
26 H 0.063 0.937
27 H 0.046 0.954
28 H 0.045 0.955
29 H 0.049 0.951
30 H 0.049 0.951
31 H 0.065 0.935
32 H 0.064 0.936
33 H 0.075 0.925
34 H 0.069 0.931
35 H 0.063 0.937
36 H 0.092 0.908
37 H 0.078 0.922
38 H 0.078 0.922
39 H 0.023 0.977
40 H 0.023 0.977
41 H 0.260 0.740
42 H 0.097 0.903
43 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.042 -21.466 5.511 24.331
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.018 4.018
3 O -0.303 6.303
4 C -0.006 4.006
5 C -0.121 4.121
6 H 0.102 0.898
7 C -0.148 4.148
8 C -0.173 4.173
9 C -0.016 4.016
10 N -0.362 5.362
11 C 0.302 3.698
12 O -0.407 6.407
13 C -0.168 4.168
14 C -0.001 4.001
15 C -0.564 4.564
16 H 0.074 0.926
17 C -0.144 4.144
18 N -0.528 5.528
19 Si 0.720 3.280
20 H -0.207 1.207
21 H -0.212 1.212
22 H -0.199 1.199
23 C -0.002 4.002
24 H 0.084 0.916
25 H 0.087 0.913
26 H 0.082 0.918
27 H 0.064 0.936
28 H 0.063 0.937
29 H 0.067 0.933
30 H 0.068 0.932
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.094 0.906
34 H 0.088 0.912
35 H 0.082 0.918
36 H 0.110 0.890
37 H 0.096 0.904
38 H 0.096 0.904
39 H 0.042 0.958
40 H 0.042 0.958
41 H 0.070 0.930
42 H 0.116 0.884
43 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 9.079 -21.303 5.373 23.772
hybrid contribution 0.607 0.626 0.014 0.872
sum 9.686 -20.676 5.386 23.460
Atomic orbital electron populations
1.21750 0.93691 1.02039 1.03550 1.22437 0.95770 0.83923 0.99708
1.87975 1.20884 1.26134 1.95334 1.22472 0.81542 0.96553 1.00002
1.21455 0.96152 0.94268 1.00242 0.89842 1.21484 0.94309 0.97005
1.02023 1.21912 1.01256 0.95482 0.98620 1.21696 0.81239 1.02012
0.96689 1.48300 1.07955 1.06467 1.73460 1.21574 0.86074 0.87564
0.74585 1.90664 1.16435 1.85318 1.48303 1.21870 1.02636 0.90049
1.02208 1.18907 0.91612 0.91316 0.98256 1.21222 0.94152 0.91538
1.49520 0.92649 1.25029 0.94853 0.99137 0.95399 1.70003 1.02590
1.31542 1.48674 0.86596 0.78534 0.84642 0.78193 1.20700 1.21244
1.19905 1.21350 1.01798 0.81815 0.95248 0.91570 0.91278 0.91771
0.93563 0.93690 0.93285 0.93240 0.91668 0.91698 0.90608 0.91176
0.91829 0.88951 0.90368 0.90352 0.95836 0.95846 0.92978 0.88420
0.92540
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16
2 C 0.06 0.53 6.66 37.16 0.25 0.78 16
3 O -0.38 -4.73 9.99 -35.23 -0.35 -5.08 16
4 C 0.07 0.71 5.32 37.16 0.20 0.91 16
5 C -0.10 -1.15 2.56 -90.72 -0.23 -1.39 16
6 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
7 C -0.11 -0.97 5.17 -26.69 -0.14 -1.11 16
8 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16
9 C 0.11 1.25 6.34 -3.71 -0.02 1.23 16
10 N -0.63 -9.89 2.98 -173.03 -0.52 -10.40 16
11 C 0.51 10.61 7.70 -10.99 -0.08 10.53 16
12 O -0.53 -13.38 15.40 5.55 0.09 -13.29 16
13 C -0.13 -2.71 3.99 -27.89 -0.11 -2.82 16
14 C 0.04 1.01 4.26 -27.88 -0.12 0.90 16
15 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16
16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16
17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
18 N -0.89 -27.87 13.29 55.43 0.74 -27.14 16
19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16
20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16
23 C 0.12 1.73 5.53 -3.93 -0.02 1.71 16
24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16
26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
36 H 0.09 1.09 5.93 -51.93 -0.31 0.79 16
37 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16
38 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16
39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16
40 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16
41 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16
42 H 0.10 1.72 6.84 -51.93 -0.36 1.36 16
43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
LS Contribution 345.61 15.07 5.21 5.21
Total: -1.00 -34.89 345.61 -8.11 -43.00
By element:
Atomic # 1 Polarization: 4.13 SS G_CDS: -7.78 Total: -3.65 kcal
Atomic # 6 Polarization: -5.07 SS G_CDS: -0.48 Total: -5.54 kcal
Atomic # 7 Polarization: -37.76 SS G_CDS: 0.22 Total: -37.54 kcal
Atomic # 8 Polarization: -18.11 SS G_CDS: -0.27 Total: -18.37 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -34.89 -8.11 -43.00 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330911549.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.855 kcal
(2) G-P(sol) polarization free energy of solvation -34.887 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.852 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds