Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46701 * 2 1 4 4 C 1.42901 * 113.99616 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46846 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.50229 * 54.93327 * 5 4 3 7 7 C 1.53042 * 109.49679 * 175.00488 * 5 4 3 8 8 C 1.53040 * 109.53725 * 181.35220 * 7 5 4 9 9 C 1.53202 * 109.31031 * 298.62885 * 8 7 5 10 10 N 1.46925 * 108.77226 * 54.63723 * 9 8 7 11 11 C 1.34777 * 120.62765 * 126.37060 * 10 9 8 12 12 O 1.21288 * 119.99593 * 179.97438 * 11 10 9 13 13 C 1.50697 * 120.00369 * 359.97438 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15 21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15 22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15 23 23 C 1.46924 * 118.74023 * 306.64001 * 10 9 8 24 24 H 1.09001 * 109.47329 * 60.00931 * 1 2 3 25 25 H 1.09012 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47647 * 299.99937 * 1 2 3 27 27 H 1.08998 * 109.47176 * 240.00115 * 2 1 3 28 28 H 1.09000 * 109.47084 * 119.99814 * 2 1 3 29 29 H 1.09004 * 109.47328 * 60.00127 * 4 3 2 30 30 H 1.08996 * 109.47593 * 299.99686 * 4 3 2 31 31 H 1.08996 * 109.46319 * 61.32756 * 7 5 4 32 32 H 1.08999 * 109.45482 * 301.36449 * 7 5 4 33 33 H 1.09000 * 109.49910 * 178.68391 * 8 7 5 34 34 H 1.08998 * 109.52910 * 58.59299 * 8 7 5 35 35 H 1.08993 * 109.58416 * 294.84692 * 9 8 7 36 36 H 1.08994 * 109.58567 * 174.42316 * 9 8 7 37 37 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 38 38 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 39 39 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 40 40 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58438 * 173.14533 * 23 10 9 43 43 H 1.08996 * 109.59050 * 293.57622 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3483 3.4427 0.8403 7 6 5.3454 3.0616 0.1261 8 6 5.7382 4.5403 0.1594 9 6 5.3060 5.2089 -1.1495 10 7 3.8704 4.9702 -1.3509 11 6 3.0271 5.9989 -1.5678 12 8 1.8440 5.7887 -1.7331 13 6 3.5540 7.4103 -1.6050 14 6 2.3988 8.3793 -1.8645 15 6 2.9257 9.7907 -1.9011 16 1 3.9791 9.9779 -1.7544 17 6 2.0629 10.8431 -2.1229 18 7 0.7801 10.6152 -2.3021 19 14 2.7161 12.5925 -2.1690 20 1 3.1023 12.9402 -3.5601 21 1 1.6618 13.5272 -1.6997 22 1 3.9035 12.7011 -1.2839 23 6 3.3706 3.5893 -1.3053 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9766 -0.8892 30 1 3.8333 0.9769 0.8908 31 1 5.8210 2.5786 -0.7275 32 1 5.6737 2.5779 1.0461 33 1 6.8188 4.6273 0.2728 34 1 5.2436 5.0299 0.9984 35 1 5.8676 4.7821 -1.9805 36 1 5.4936 6.2810 -1.0915 37 1 4.2916 7.5018 -2.4023 38 1 4.0205 7.6492 -0.6494 39 1 1.6615 8.2876 -1.0669 40 1 1.9319 8.1405 -2.8201 41 1 0.1731 11.3556 -2.4577 42 1 2.2815 3.5933 -1.3500 43 1 3.7710 3.0277 -2.1492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330911549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -108.851973 kcal Electronic energy + Delta-G solvation = -20933.186255 eV Core-core repulsion = 17784.450921 eV Total energy + Delta-G solvation = -3148.735334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93232 -38.33871 -36.97616 -33.59050 -33.28599 -31.89935 -31.10724 -30.48055 -26.60888 -25.68315 -24.61476 -22.98255 -22.19039 -21.54418 -20.12604 -18.40002 -16.97526 -16.79357 -16.43396 -15.83809 -15.31043 -15.15313 -14.75857 -14.46179 -14.34547 -13.94615 -13.41221 -13.24341 -13.12707 -12.83805 -12.52481 -12.23071 -12.05146 -11.98920 -11.62076 -11.36867 -11.16082 -11.11264 -10.96085 -10.88960 -10.72496 -10.57912 -10.50964 -9.90637 -9.77470 -9.55135 -9.11258 -8.90896 -8.33911 -8.25821 -5.92100 -3.96413 3.29347 3.35729 3.36978 3.41928 3.44469 3.46455 4.50040 4.62977 4.64320 4.73213 4.83108 4.90563 4.95220 5.12846 5.13666 5.24504 5.34373 5.37331 5.40820 5.42629 5.47632 5.53480 5.60750 5.71301 5.74994 5.80920 5.90642 5.94859 5.99722 6.21394 6.24921 6.27955 6.29078 6.82585 6.97703 7.05258 7.78782 7.85680 7.91934 8.12190 8.43129 8.84275 9.12337 9.66764 11.18894 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.003668 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.449607 B = 7632.382838 C = 8561.730816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.384 6.384 4 C 0.072 3.928 5 C -0.102 4.102 6 H 0.083 0.917 7 C -0.111 4.111 8 C -0.134 4.134 9 C 0.107 3.893 10 N -0.626 5.626 11 C 0.512 3.488 12 O -0.532 6.532 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.121 3.879 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.097 0.903 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 -21.466 5.511 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.303 6.303 4 C -0.006 4.006 5 C -0.121 4.121 6 H 0.102 0.898 7 C -0.148 4.148 8 C -0.173 4.173 9 C -0.016 4.016 10 N -0.362 5.362 11 C 0.302 3.698 12 O -0.407 6.407 13 C -0.168 4.168 14 C -0.001 4.001 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.002 4.002 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.079 -21.303 5.373 23.772 hybrid contribution 0.607 0.626 0.014 0.872 sum 9.686 -20.676 5.386 23.460 Atomic orbital electron populations 1.21750 0.93691 1.02039 1.03550 1.22437 0.95770 0.83923 0.99708 1.87975 1.20884 1.26134 1.95334 1.22472 0.81542 0.96553 1.00002 1.21455 0.96152 0.94268 1.00242 0.89842 1.21484 0.94309 0.97005 1.02023 1.21912 1.01256 0.95482 0.98620 1.21696 0.81239 1.02012 0.96689 1.48300 1.07955 1.06467 1.73460 1.21574 0.86074 0.87564 0.74585 1.90664 1.16435 1.85318 1.48303 1.21870 1.02636 0.90049 1.02208 1.18907 0.91612 0.91316 0.98256 1.21222 0.94152 0.91538 1.49520 0.92649 1.25029 0.94853 0.99137 0.95399 1.70003 1.02590 1.31542 1.48674 0.86596 0.78534 0.84642 0.78193 1.20700 1.21244 1.19905 1.21350 1.01798 0.81815 0.95248 0.91570 0.91278 0.91771 0.93563 0.93690 0.93285 0.93240 0.91668 0.91698 0.90608 0.91176 0.91829 0.88951 0.90368 0.90352 0.95836 0.95846 0.92978 0.88420 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.38 -4.73 9.99 -35.23 -0.35 -5.08 16 4 C 0.07 0.71 5.32 37.16 0.20 0.91 16 5 C -0.10 -1.15 2.56 -90.72 -0.23 -1.39 16 6 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.11 -0.97 5.17 -26.69 -0.14 -1.11 16 8 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 9 C 0.11 1.25 6.34 -3.71 -0.02 1.23 16 10 N -0.63 -9.89 2.98 -173.03 -0.52 -10.40 16 11 C 0.51 10.61 7.70 -10.99 -0.08 10.53 16 12 O -0.53 -13.38 15.40 5.55 0.09 -13.29 16 13 C -0.13 -2.71 3.99 -27.89 -0.11 -2.82 16 14 C 0.04 1.01 4.26 -27.88 -0.12 0.90 16 15 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.87 13.29 55.43 0.74 -27.14 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.12 1.73 5.53 -3.93 -0.02 1.71 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.09 5.93 -51.93 -0.31 0.79 16 37 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 38 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 42 H 0.10 1.72 6.84 -51.93 -0.36 1.36 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -34.89 345.61 -8.11 -43.00 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -7.78 Total: -3.65 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.48 Total: -5.54 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.22 Total: -37.54 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.27 Total: -18.37 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.89 -8.11 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330911549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.855 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds