Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46701 * 2 1 4 4 C 1.42901 * 113.99616 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46846 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.50229 * 54.93327 * 5 4 3 7 7 C 1.53042 * 109.49679 * 175.00488 * 5 4 3 8 8 C 1.53040 * 109.53725 * 181.35220 * 7 5 4 9 9 C 1.53202 * 109.31031 * 298.62885 * 8 7 5 10 10 N 1.46925 * 108.77226 * 54.63723 * 9 8 7 11 11 C 1.34777 * 120.62765 * 126.37060 * 10 9 8 12 12 O 1.21288 * 119.99593 * 179.97438 * 11 10 9 13 13 C 1.50697 * 120.00369 * 359.97438 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15 21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15 22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15 23 23 C 1.46924 * 118.74023 * 306.64001 * 10 9 8 24 24 H 1.09001 * 109.47329 * 60.00931 * 1 2 3 25 25 H 1.09012 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47647 * 299.99937 * 1 2 3 27 27 H 1.08998 * 109.47176 * 240.00115 * 2 1 3 28 28 H 1.09000 * 109.47084 * 119.99814 * 2 1 3 29 29 H 1.09004 * 109.47328 * 60.00127 * 4 3 2 30 30 H 1.08996 * 109.47593 * 299.99686 * 4 3 2 31 31 H 1.08996 * 109.46319 * 61.32756 * 7 5 4 32 32 H 1.08999 * 109.45482 * 301.36449 * 7 5 4 33 33 H 1.09000 * 109.49910 * 178.68391 * 8 7 5 34 34 H 1.08998 * 109.52910 * 58.59299 * 8 7 5 35 35 H 1.08993 * 109.58416 * 294.84692 * 9 8 7 36 36 H 1.08994 * 109.58567 * 174.42316 * 9 8 7 37 37 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 38 38 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 39 39 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 40 40 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58438 * 173.14533 * 23 10 9 43 43 H 1.08996 * 109.59050 * 293.57622 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3483 3.4427 0.8403 7 6 5.3454 3.0616 0.1261 8 6 5.7382 4.5403 0.1594 9 6 5.3060 5.2089 -1.1495 10 7 3.8704 4.9702 -1.3509 11 6 3.0271 5.9989 -1.5678 12 8 1.8440 5.7887 -1.7331 13 6 3.5540 7.4103 -1.6050 14 6 2.3988 8.3793 -1.8645 15 6 2.9257 9.7907 -1.9011 16 1 3.9791 9.9779 -1.7544 17 6 2.0629 10.8431 -2.1229 18 7 0.7801 10.6152 -2.3021 19 14 2.7161 12.5925 -2.1690 20 1 3.1023 12.9402 -3.5601 21 1 1.6618 13.5272 -1.6997 22 1 3.9035 12.7011 -1.2839 23 6 3.3706 3.5893 -1.3053 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9766 -0.8892 30 1 3.8333 0.9769 0.8908 31 1 5.8210 2.5786 -0.7275 32 1 5.6737 2.5779 1.0461 33 1 6.8188 4.6273 0.2728 34 1 5.2436 5.0299 0.9984 35 1 5.8676 4.7821 -1.9805 36 1 5.4936 6.2810 -1.0915 37 1 4.2916 7.5018 -2.4023 38 1 4.0205 7.6492 -0.6494 39 1 1.6615 8.2876 -1.0669 40 1 1.9319 8.1405 -2.8201 41 1 0.1731 11.3556 -2.4577 42 1 2.2815 3.5933 -1.3500 43 1 3.7710 3.0277 -2.1492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330911549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -132.127105 kcal Electronic energy + Delta-G solvation = -20934.195541 eV Core-core repulsion = 17784.450921 eV Total energy + Delta-G solvation = -3149.744619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25059 -39.38440 -38.12440 -35.61714 -34.57103 -32.97444 -32.76457 -31.51236 -28.30398 -26.67727 -26.13825 -23.73295 -23.40910 -23.08207 -21.20902 -19.80906 -18.82710 -17.67141 -17.57500 -17.32112 -16.65326 -16.55521 -16.36616 -15.60648 -15.49846 -15.03189 -14.65778 -14.37466 -14.24627 -14.11682 -13.82070 -13.70182 -13.29962 -13.19192 -12.95217 -12.81061 -12.51179 -12.37998 -12.11085 -11.98224 -11.93532 -11.84804 -11.66330 -11.49632 -11.44602 -11.30737 -10.65173 -10.57461 -10.52998 -9.60073 -8.17964 -6.32757 1.41877 1.45395 1.56304 1.67758 2.06575 2.43463 2.73452 3.14724 3.68285 3.79643 3.83870 4.05322 4.10530 4.15742 4.21085 4.30390 4.42727 4.44903 4.49026 4.49597 4.52628 4.61780 4.64729 4.71765 4.83118 4.89940 4.91990 5.00396 5.01222 5.12706 5.15470 5.24299 5.25552 5.45548 5.47460 5.60407 5.65496 5.84175 6.16493 6.33237 6.43011 6.85552 7.27168 7.37669 8.95041 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.003668 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.449607 B = 7632.382838 C = 8561.730816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 O -0.422 6.422 4 C 0.071 3.929 5 C -0.096 4.096 6 H 0.055 0.945 7 C -0.104 4.104 8 C -0.130 4.130 9 C 0.095 3.905 10 N -0.614 5.614 11 C 0.505 3.495 12 O -0.594 6.594 13 C -0.113 4.113 14 C 0.043 3.957 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.977 3.023 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.253 1.253 23 C 0.119 3.881 24 H 0.048 0.952 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.102 0.898 39 H -0.022 1.022 40 H -0.020 1.020 41 H 0.263 0.737 42 H 0.053 0.947 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.046 -22.244 6.083 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.342 6.342 4 C -0.006 4.006 5 C -0.115 4.115 6 H 0.073 0.927 7 C -0.142 4.142 8 C -0.168 4.168 9 C -0.027 4.027 10 N -0.347 5.347 11 C 0.296 3.704 12 O -0.475 6.475 13 C -0.153 4.153 14 C 0.005 3.995 15 C -0.580 4.580 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.801 3.199 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.177 1.177 23 C -0.004 4.004 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.120 0.880 39 H -0.003 1.003 40 H -0.002 1.002 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.165 -22.127 5.964 26.429 hybrid contribution -0.653 0.775 -0.168 1.027 sum 12.512 -21.352 5.796 25.418 Atomic orbital electron populations 1.21797 0.94003 1.03266 1.02108 1.22620 0.95669 0.82872 1.01166 1.87952 1.22481 1.28166 1.95632 1.22580 0.80648 0.95473 1.01882 1.21423 0.98303 0.94872 0.96934 0.92655 1.21499 0.91649 0.96863 1.04141 1.21923 1.03103 0.95497 0.96316 1.22129 0.78356 1.02880 0.99296 1.48310 1.09400 1.05976 1.71033 1.21488 0.85710 0.88569 0.74651 1.90641 1.19076 1.86143 1.51616 1.21620 1.00350 0.89035 1.04260 1.18689 0.92869 0.93568 0.94338 1.21700 0.95277 0.91902 1.49120 0.90395 1.26194 0.94931 1.04893 0.94613 1.70196 1.04524 1.33330 1.49862 0.85273 0.78263 0.77509 0.78901 1.19599 1.21218 1.17701 1.21449 0.99468 0.81293 0.98162 0.93325 0.88706 0.92893 0.92230 0.91889 0.91507 0.90982 0.89578 0.89416 0.87190 0.92766 0.89043 0.88907 0.87767 0.88004 1.00338 1.00183 0.92854 0.92819 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.05 0.91 6.66 71.98 0.48 1.39 16 3 O -0.42 -10.40 9.99 -148.98 -1.49 -11.89 16 4 C 0.07 1.27 5.32 71.98 0.38 1.65 16 5 C -0.10 -2.06 2.56 -10.86 -0.03 -2.08 16 6 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 7 C -0.10 -1.41 5.17 30.62 0.16 -1.26 16 8 C -0.13 -1.99 6.08 30.68 0.19 -1.80 16 9 C 0.09 1.94 6.34 86.37 0.55 2.49 16 10 N -0.61 -19.20 2.98 -819.73 -2.44 -21.64 16 11 C 0.51 21.83 7.70 87.66 0.67 22.51 16 12 O -0.59 -32.36 15.40 -3.05 -0.05 -32.41 16 13 C -0.11 -4.85 3.99 29.85 0.12 -4.73 16 14 C 0.04 2.51 4.26 29.85 0.13 2.64 16 15 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 16 H 0.08 4.10 7.74 -2.91 -0.02 4.08 16 17 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 18 N -0.94 -61.14 13.29 21.45 0.28 -60.86 16 19 Si 0.98 45.00 29.54 68.60 2.03 47.02 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 23 C 0.12 3.41 5.53 86.22 0.48 3.89 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.91 5.93 -2.39 -0.01 1.90 16 37 H 0.10 3.90 7.94 -2.39 -0.02 3.89 16 38 H 0.10 3.86 7.69 -2.39 -0.02 3.84 16 39 H -0.02 -1.45 8.10 -2.39 -0.02 -1.47 16 40 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 41 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 42 H 0.05 2.03 6.84 -2.39 -0.02 2.02 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -82.81 345.61 3.84 -78.97 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.95 Total: 9.60 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 4.56 Total: -8.79 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.16 Total: -82.50 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.53 Total: -44.30 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -82.81 3.84 -78.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330911549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.161 kcal (2) G-P(sol) polarization free energy of solvation -82.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds