Wall clock time and date at job start Mon Mar 30 2020 01:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 120.00095 * 2 1 4 4 C 1.50696 * 109.47040 * 269.99761 * 3 2 1 5 5 H 1.07998 * 119.99918 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99899 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00481 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99985 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47243 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47210 * 120.00072 * 8 6 4 11 11 H 1.48502 * 109.47033 * 240.00048 * 8 6 4 12 12 C 1.34774 * 119.99654 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99707 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00169 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47131 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.47540 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47540 * 179.97438 * 16 15 14 18 18 C 1.53175 * 109.53913 * 65.44548 * 17 16 15 19 19 C 1.53092 * 109.16179 * 176.85000 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 1.08999 * 109.46905 * 270.00247 * 1 2 3 24 24 H 1.08997 * 109.46414 * 29.99968 * 1 2 3 25 25 H 1.08992 * 109.46665 * 150.00129 * 1 2 3 26 26 H 1.09002 * 109.47189 * 29.99695 * 3 2 1 27 27 H 1.08999 * 109.47187 * 149.99447 * 3 2 1 28 28 H 0.96999 * 120.00568 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.46854 * 60.00454 * 14 12 2 30 30 H 1.08997 * 109.47397 * 299.99886 * 14 12 2 31 31 H 1.09009 * 109.47020 * 60.00053 * 15 14 12 32 32 H 1.09005 * 109.47341 * 300.00316 * 15 14 12 33 33 H 1.09005 * 109.46474 * 59.99952 * 16 15 14 34 34 H 1.09005 * 109.47030 * 300.00468 * 16 15 14 35 35 H 1.08997 * 109.61228 * 305.22843 * 17 16 15 36 36 H 1.09006 * 109.52647 * 296.75300 * 18 17 16 37 37 H 1.08998 * 109.52537 * 56.94192 * 18 17 16 38 38 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 39 39 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 40 40 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 41 41 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 42 42 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 43 43 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8778 -1.6727 7 7 3.5526 3.6186 -0.6732 8 14 3.4369 3.4174 -3.4339 9 1 2.8601 2.4168 -4.3673 10 1 2.7989 4.7380 -3.6670 11 1 4.8994 3.5261 -3.6675 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 6 1.6146 -4.9603 -0.0001 17 6 2.6088 -6.1232 -0.0008 18 6 3.3977 -6.1235 1.3122 19 6 4.3333 -7.3351 1.3360 20 8 3.5658 -8.5309 1.1832 21 6 2.8441 -8.6075 -0.0478 22 6 1.8487 -7.4471 -0.1272 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5138 27 1 3.1500 1.1384 0.5139 28 1 4.0294 4.4445 -0.8504 29 1 0.7591 -2.5302 -0.8897 30 1 0.7584 -2.5299 0.8902 31 1 3.0062 -3.5775 0.8906 32 1 3.0063 -3.5775 -0.8895 33 1 0.9883 -5.0177 -0.8904 34 1 0.9876 -5.0183 0.8896 35 1 3.2967 -6.0160 -0.8394 36 1 3.9853 -5.2082 1.3844 37 1 2.7061 -6.1807 2.1527 38 1 4.8662 -7.3642 2.2864 39 1 5.0506 -7.2567 0.5191 40 1 2.3042 -9.5533 -0.0943 41 1 3.5418 -8.5458 -0.8829 42 1 1.1258 -7.5310 0.6843 43 1 1.3285 -7.4783 -1.0845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330955513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:21 Heat of formation + Delta-G solvation = -112.844617 kcal Electronic energy + Delta-G solvation = -20668.927533 eV Core-core repulsion = 17520.019065 eV Total energy + Delta-G solvation = -3148.908468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69537 -38.92115 -35.96598 -34.74659 -32.81286 -32.32542 -31.27759 -28.60269 -27.28061 -25.71250 -24.27065 -23.67427 -22.47093 -20.96358 -20.17190 -18.28017 -16.54753 -16.39738 -16.22039 -16.08732 -15.62933 -15.19447 -14.93766 -14.67314 -14.23315 -14.09569 -13.62960 -13.07626 -12.72055 -12.62318 -12.28512 -12.18564 -11.90016 -11.75397 -11.59512 -11.56225 -11.39798 -11.17157 -10.91536 -10.84576 -10.68295 -10.55935 -10.40468 -10.29330 -10.14939 -9.67290 -9.59702 -8.82809 -8.43504 -7.60737 -6.03841 -4.08583 3.29498 3.36693 3.40373 3.50515 3.67452 4.00210 4.43610 4.50484 4.53720 4.66411 4.81379 4.98294 5.11288 5.15879 5.20141 5.26909 5.29716 5.32287 5.46003 5.52338 5.56788 5.59927 5.68396 5.73432 5.78994 5.84411 5.92220 5.96012 5.98454 6.01371 6.18000 6.22897 6.38831 6.51614 6.98268 7.08484 7.46154 7.57337 7.92998 8.24775 8.46514 8.91890 9.14667 9.56687 11.04265 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.003151 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.159096 B = 8884.380889 C = 9107.480447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.606 5.606 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.501 3.499 13 O -0.545 6.545 14 C -0.139 4.139 15 C -0.104 4.104 16 C -0.112 4.112 17 C -0.090 4.090 18 C -0.154 4.154 19 C 0.059 3.941 20 O -0.387 6.387 21 C 0.060 3.940 22 C -0.151 4.151 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -20.688 2.439 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.338 5.338 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.288 3.712 13 O -0.423 6.423 14 C -0.179 4.179 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.109 4.109 18 C -0.191 4.191 19 C -0.017 4.017 20 O -0.306 6.306 21 C -0.017 4.017 22 C -0.189 4.189 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.520 -20.629 2.623 21.516 hybrid contribution 0.016 0.795 -1.226 1.462 sum -5.504 -19.834 1.397 20.631 Atomic orbital electron populations 1.21618 0.81559 1.02496 1.00298 1.48186 1.06127 1.07985 1.71488 1.19276 0.92557 0.78267 0.97451 1.21478 1.36333 1.06184 0.92361 0.92473 1.24949 0.95406 0.96408 0.97452 1.69944 1.38520 1.14331 1.30661 0.86440 0.78089 0.78287 0.84588 1.19825 1.20955 1.20857 1.20437 0.88176 0.85266 0.77325 1.90653 1.14039 1.87358 1.50216 1.21697 0.99379 0.93607 1.03219 1.21368 0.97515 0.91706 1.03605 1.21641 0.97624 0.93762 1.01920 1.21209 0.97376 0.94293 0.97979 1.22310 0.99550 0.99085 0.98184 1.22615 0.92902 0.84353 1.01871 1.87912 1.63704 1.40095 1.38852 1.22569 0.93786 0.98680 0.86652 1.22256 0.98830 0.95048 1.02734 0.93864 0.90906 0.92447 0.95114 0.93902 0.92781 0.89748 0.89900 0.91161 0.91312 0.91936 0.91972 0.90948 0.90090 0.91080 0.88955 0.93203 0.89151 0.93308 0.91073 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.24 59.85 0.61 1.96 16 2 N -0.61 -13.07 2.86 -182.96 -0.52 -13.60 16 3 C 0.24 6.51 5.16 -5.20 -0.03 6.49 16 4 C -0.52 -15.13 9.39 -34.44 -0.32 -15.46 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.50 10.49 7.67 -10.99 -0.08 10.41 16 13 O -0.54 -13.84 15.56 5.56 0.09 -13.75 16 14 C -0.14 -2.00 4.25 -27.88 -0.12 -2.12 16 15 C -0.10 -1.39 4.27 -26.73 -0.11 -1.50 16 16 C -0.11 -1.12 4.69 -26.73 -0.13 -1.24 16 17 C -0.09 -0.86 2.27 -90.44 -0.21 -1.06 16 18 C -0.15 -1.50 5.10 -26.59 -0.14 -1.63 16 19 C 0.06 0.56 6.84 37.21 0.25 0.81 16 20 O -0.39 -4.15 10.77 -35.23 -0.38 -4.53 16 21 C 0.06 0.51 6.84 37.20 0.25 0.76 16 22 C -0.15 -1.24 5.42 -26.59 -0.14 -1.39 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 25 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 30 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.07 1.01 6.62 -51.92 -0.34 0.66 16 32 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.84 6.75 -51.93 -0.35 0.49 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -33.72 343.61 -7.85 -41.57 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.67 Total: -3.36 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.25 Total: -2.35 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.21 Total: -39.80 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.29 Total: -18.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.72 -7.85 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330955513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.274 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds