Wall clock time and date at job start Mon Mar 30 2020 01:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 120.00095 * 2 1 4 4 C 1.50696 * 109.47040 * 269.99761 * 3 2 1 5 5 H 1.07998 * 119.99918 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99899 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00481 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99985 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47243 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47210 * 120.00072 * 8 6 4 11 11 H 1.48502 * 109.47033 * 240.00048 * 8 6 4 12 12 C 1.34774 * 119.99654 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99707 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00169 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47131 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.47540 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47540 * 179.97438 * 16 15 14 18 18 C 1.53175 * 109.53913 * 65.44548 * 17 16 15 19 19 C 1.53092 * 109.16179 * 176.85000 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 1.08999 * 109.46905 * 270.00247 * 1 2 3 24 24 H 1.08997 * 109.46414 * 29.99968 * 1 2 3 25 25 H 1.08992 * 109.46665 * 150.00129 * 1 2 3 26 26 H 1.09002 * 109.47189 * 29.99695 * 3 2 1 27 27 H 1.08999 * 109.47187 * 149.99447 * 3 2 1 28 28 H 0.96999 * 120.00568 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.46854 * 60.00454 * 14 12 2 30 30 H 1.08997 * 109.47397 * 299.99886 * 14 12 2 31 31 H 1.09009 * 109.47020 * 60.00053 * 15 14 12 32 32 H 1.09005 * 109.47341 * 300.00316 * 15 14 12 33 33 H 1.09005 * 109.46474 * 59.99952 * 16 15 14 34 34 H 1.09005 * 109.47030 * 300.00468 * 16 15 14 35 35 H 1.08997 * 109.61228 * 305.22843 * 17 16 15 36 36 H 1.09006 * 109.52647 * 296.75300 * 18 17 16 37 37 H 1.08998 * 109.52537 * 56.94192 * 18 17 16 38 38 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 39 39 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 40 40 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 41 41 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 42 42 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 43 43 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8778 -1.6727 7 7 3.5526 3.6186 -0.6732 8 14 3.4369 3.4174 -3.4339 9 1 2.8601 2.4168 -4.3673 10 1 2.7989 4.7380 -3.6670 11 1 4.8994 3.5261 -3.6675 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 6 1.6146 -4.9603 -0.0001 17 6 2.6088 -6.1232 -0.0008 18 6 3.3977 -6.1235 1.3122 19 6 4.3333 -7.3351 1.3360 20 8 3.5658 -8.5309 1.1832 21 6 2.8441 -8.6075 -0.0478 22 6 1.8487 -7.4471 -0.1272 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6085 2.0284 0.5138 27 1 3.1500 1.1384 0.5139 28 1 4.0294 4.4445 -0.8504 29 1 0.7591 -2.5302 -0.8897 30 1 0.7584 -2.5299 0.8902 31 1 3.0062 -3.5775 0.8906 32 1 3.0063 -3.5775 -0.8895 33 1 0.9883 -5.0177 -0.8904 34 1 0.9876 -5.0183 0.8896 35 1 3.2967 -6.0160 -0.8394 36 1 3.9853 -5.2082 1.3844 37 1 2.7061 -6.1807 2.1527 38 1 4.8662 -7.3642 2.2864 39 1 5.0506 -7.2567 0.5191 40 1 2.3042 -9.5533 -0.0943 41 1 3.5418 -8.5458 -0.8829 42 1 1.1258 -7.5310 0.6843 43 1 1.3285 -7.4783 -1.0845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330955513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:21 Heat of formation + Delta-G solvation = -134.480336 kcal Electronic energy + Delta-G solvation = -20669.865729 eV Core-core repulsion = 17520.019065 eV Total energy + Delta-G solvation = -3149.846663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72987 -40.26637 -36.95862 -36.45190 -34.76552 -33.54924 -31.97898 -30.22538 -28.62009 -27.23926 -25.59020 -24.51362 -23.95574 -21.99416 -20.92219 -19.86327 -18.71891 -17.71553 -17.19825 -17.01369 -16.90419 -16.77657 -16.08980 -15.89811 -15.52830 -15.03071 -14.71756 -14.42896 -14.18215 -13.84937 -13.67355 -13.45579 -13.23017 -13.15559 -12.90252 -12.74680 -12.59052 -12.56272 -12.30962 -12.22206 -12.18673 -11.78679 -11.68106 -11.58637 -11.15147 -11.11362 -10.67106 -10.59050 -10.36180 -9.40543 -8.24274 -6.39777 1.34812 1.37390 1.49374 1.88382 2.32690 2.49292 2.99521 3.04801 3.65197 3.78589 3.84694 3.96195 4.11671 4.17492 4.25251 4.34244 4.40751 4.52640 4.55836 4.67003 4.71289 4.74385 4.77889 4.80035 4.86842 4.94916 4.96736 5.02739 5.06940 5.12247 5.16438 5.22247 5.23228 5.33290 5.47483 5.54213 5.56689 5.84642 6.04686 6.28519 6.68626 6.82025 7.26958 7.51992 8.82981 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031098 B = 0.003151 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.159096 B = 8884.380889 C = 9107.480447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.281 1.281 12 C 0.487 3.513 13 O -0.603 6.603 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.100 4.100 17 C -0.092 4.092 18 C -0.152 4.152 19 C 0.058 3.942 20 O -0.405 6.405 21 C 0.053 3.947 22 C -0.144 4.144 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.022 0.978 27 H -0.005 1.005 28 H 0.267 0.733 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -22.166 1.270 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.346 5.346 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.207 1.207 12 C 0.277 3.723 13 O -0.485 6.485 14 C -0.162 4.162 15 C -0.138 4.138 16 C -0.138 4.138 17 C -0.110 4.110 18 C -0.190 4.190 19 C -0.019 4.019 20 O -0.324 6.324 21 C -0.023 4.023 22 C -0.182 4.182 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.013 0.987 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.783 -22.126 1.459 23.501 hybrid contribution 0.716 1.252 -0.807 1.653 sum -7.067 -20.874 0.652 22.048 Atomic orbital electron populations 1.21935 0.77800 1.04048 1.02560 1.48257 1.08499 1.06483 1.71366 1.18739 0.91030 0.80708 0.96004 1.21741 1.36801 1.06532 0.93039 0.92875 1.25911 0.94885 0.96415 1.02189 1.70063 1.39000 1.14830 1.33088 0.85327 0.77898 0.78441 0.78886 1.19031 1.19271 1.20731 1.21698 0.87969 0.87003 0.75607 1.90620 1.16953 1.88323 1.52652 1.21721 0.99200 0.89333 1.05982 1.21323 0.97354 0.93453 1.01705 1.21554 0.97392 0.91483 1.03340 1.21214 0.97356 0.95146 0.97324 1.22275 0.99563 0.98590 0.98566 1.22654 0.92858 0.84041 1.02343 1.87887 1.64080 1.40422 1.40028 1.22760 0.93951 0.99672 0.85951 1.22206 0.98544 0.93784 1.03651 0.91179 0.91832 0.88439 0.96023 0.98723 0.92367 0.86968 0.86549 0.92898 0.93706 0.90310 0.90570 0.91801 0.91435 0.91023 0.88312 0.93141 0.87544 0.93018 0.90896 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.24 127.77 1.31 3.62 16 2 N -0.61 -26.51 2.86 -851.14 -2.43 -28.94 16 3 C 0.26 14.26 5.16 85.63 0.44 14.70 16 4 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.00 0.28 5.46 84.65 0.46 0.74 16 7 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 8 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.49 20.43 7.67 87.66 0.67 21.10 16 13 O -0.60 -32.04 15.56 -3.04 -0.05 -32.08 16 14 C -0.12 -3.22 4.25 29.85 0.13 -3.10 16 15 C -0.10 -2.57 4.27 30.59 0.13 -2.44 16 16 C -0.10 -1.73 4.69 30.59 0.14 -1.58 16 17 C -0.09 -1.59 2.27 -10.68 -0.02 -1.62 16 18 C -0.15 -2.87 5.10 30.68 0.16 -2.72 16 19 C 0.06 1.06 6.84 72.01 0.49 1.55 16 20 O -0.40 -8.19 10.77 -148.98 -1.60 -9.79 16 21 C 0.05 0.79 6.84 72.01 0.49 1.28 16 22 C -0.14 -2.00 5.42 30.68 0.17 -1.83 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 25 H 0.10 2.08 6.44 -2.39 -0.02 2.07 16 26 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 27 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.11 2.39 7.40 -2.39 -0.02 2.37 16 30 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 31 H 0.05 1.53 6.62 -2.38 -0.02 1.51 16 32 H 0.04 1.35 8.10 -2.38 -0.02 1.33 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 34 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.44 6.75 -2.38 -0.02 1.42 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.84 343.61 3.99 -72.85 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.95 Total: 9.47 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.81 Total: -2.02 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -2.15 Total: -85.90 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.65 Total: -41.88 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.84 3.99 -72.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330955513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.629 kcal (2) G-P(sol) polarization free energy of solvation -76.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds