Wall clock time and date at job start Mon Mar 30 2020 01:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47088 * 2 1 4 4 C 1.46507 * 119.99911 * 285.42335 * 3 2 1 5 5 C 1.50694 * 109.46997 * 270.00063 * 4 3 2 6 6 H 1.07999 * 120.00347 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00038 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00113 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47309 * 60.00205 * 9 7 5 11 11 H 1.48499 * 109.47298 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47282 * 300.00268 * 9 7 5 13 13 C 1.34776 * 120.00423 * 105.42058 * 3 2 1 14 14 O 1.21280 * 120.00512 * 177.76973 * 13 3 2 15 15 C 1.50702 * 119.99779 * 357.77691 * 13 3 2 16 16 O 1.42907 * 109.47158 * 48.73714 * 15 13 3 17 17 C 1.42894 * 114.00201 * 58.84382 * 16 15 13 18 18 C 1.53001 * 109.47175 * 168.73197 * 15 13 3 19 19 C 1.53002 * 109.47005 * 179.97438 * 18 15 13 20 20 C 1.52995 * 109.47470 * 300.00674 * 19 18 15 21 21 C 1.52993 * 109.47324 * 59.99779 * 20 19 18 22 22 C 1.52995 * 109.47114 * 288.73757 * 15 13 3 23 23 H 1.09002 * 109.47430 * 308.05286 * 1 2 3 24 24 H 1.09003 * 109.47496 * 68.05806 * 1 2 3 25 25 H 1.09003 * 109.47400 * 188.05551 * 1 2 3 26 26 H 1.08994 * 109.47310 * 239.99702 * 2 1 3 27 27 H 1.09003 * 109.47023 * 119.99701 * 2 1 3 28 28 H 1.08999 * 109.46941 * 30.00065 * 4 3 2 29 29 H 1.09003 * 109.46929 * 150.00092 * 4 3 2 30 30 H 0.96995 * 119.99751 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47183 * 300.50845 * 17 16 15 32 32 H 1.09002 * 109.47101 * 60.50657 * 17 16 15 33 33 H 1.09002 * 109.47060 * 180.50527 * 17 16 15 34 34 H 1.08998 * 109.47140 * 300.00344 * 18 15 13 35 35 H 1.09000 * 109.46828 * 60.00167 * 18 15 13 36 36 H 1.08997 * 109.47021 * 180.02562 * 19 18 15 37 37 H 1.09000 * 109.46919 * 60.00556 * 19 18 15 38 38 H 1.09000 * 109.46952 * 299.99861 * 20 19 18 39 39 H 1.09003 * 109.47423 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47321 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47039 * 60.00135 * 21 20 19 42 42 H 1.09000 * 109.46952 * 299.99871 * 22 15 13 43 43 H 1.08997 * 109.47509 * 59.99684 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9443 2.1843 -1.2231 5 6 3.2102 2.0030 -2.0203 6 1 3.9919 1.3549 -1.6525 7 6 3.3706 2.6647 -3.2192 8 7 2.4189 3.4545 -3.6669 9 14 4.9400 2.4407 -4.2071 10 1 5.1002 1.0081 -4.5638 11 1 4.8651 3.2546 -5.4469 12 1 6.1029 2.8817 -3.3956 13 6 2.5355 1.9131 1.1251 14 8 2.9768 3.0428 1.1147 15 6 2.5657 1.1042 2.3963 16 8 3.1051 -0.1909 2.1241 17 6 4.4272 -0.1677 1.5822 18 6 3.4407 1.8137 3.4316 19 6 3.4708 0.9927 4.7224 20 6 2.0490 0.8489 5.2687 21 6 1.1741 0.1394 4.2334 22 6 1.1440 0.9599 2.9428 23 1 -0.3634 0.6334 0.8092 24 1 -0.3634 0.3840 -0.9532 25 1 -0.3634 -1.0175 0.1440 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.0905 1.8613 -1.8187 29 1 1.8275 3.2358 -0.9608 30 1 2.5319 3.9202 -4.5102 31 1 4.4266 0.3915 0.6466 32 1 5.1022 0.3113 2.2914 33 1 4.7611 -1.1883 1.3953 34 1 4.4535 1.9164 3.0422 35 1 3.0293 2.8015 3.6393 36 1 4.0938 1.4983 5.4601 37 1 3.8820 0.0047 4.5150 38 1 1.6378 1.8368 5.4761 39 1 2.0705 0.2643 6.1885 40 1 0.1610 0.0373 4.6224 41 1 1.5853 -0.8486 4.0260 42 1 0.7326 1.9477 3.1505 43 1 0.5207 0.4545 2.2052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331049558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:50 Heat of formation + Delta-G solvation = -87.622103 kcal Electronic energy + Delta-G solvation = -22934.808458 eV Core-core repulsion = 19786.993721 eV Total energy + Delta-G solvation = -3147.814738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61954 -37.59111 -35.96643 -35.23072 -32.75927 -30.92844 -30.15542 -29.90128 -27.17869 -26.38045 -23.80955 -22.88228 -22.63186 -21.64809 -19.64954 -18.59470 -16.82695 -16.37689 -16.23747 -15.67322 -15.01676 -14.90219 -14.46574 -14.10954 -13.82377 -13.49502 -13.36675 -13.11567 -12.61957 -12.33609 -12.28450 -12.05369 -11.93617 -11.86481 -11.50350 -11.25194 -11.14987 -10.97768 -10.90354 -10.79383 -10.53545 -10.46289 -10.37949 -10.13981 -10.03982 -9.61822 -9.46748 -8.44796 -8.41362 -7.58589 -6.02525 -4.06985 3.26820 3.31895 3.36208 3.39304 3.79415 4.05197 4.45108 4.72800 4.81860 4.89811 5.16878 5.27179 5.30073 5.32140 5.46742 5.53688 5.58486 5.63885 5.68531 5.71323 5.79870 5.82049 5.93892 5.95098 6.03322 6.09050 6.14321 6.22563 6.25401 6.32300 6.41016 6.44982 6.49923 6.74670 7.06221 7.25907 7.47335 7.60751 7.93996 8.26263 8.48774 8.90740 9.10001 9.57609 11.05560 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.006030 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.388851 B = 4642.457606 C = 4970.227470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 N -0.583 5.583 4 C 0.244 3.756 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.484 3.516 14 O -0.540 6.540 15 C 0.107 3.893 16 O -0.362 6.362 17 C 0.018 3.982 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.116 4.116 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.263 0.737 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 -9.252 15.034 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.049 4.049 3 N -0.314 5.314 4 C 0.124 3.876 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.269 3.731 14 O -0.418 6.418 15 C 0.065 3.935 16 O -0.282 6.282 17 C -0.078 4.078 18 C -0.166 4.166 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.154 4.154 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.131 0.869 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.864 -8.695 14.864 17.321 hybrid contribution 1.021 0.195 -0.958 1.413 sum -0.843 -8.500 13.906 16.320 Atomic orbital electron populations 1.22287 0.97263 1.01062 1.02226 1.22150 0.93596 0.84206 1.04933 1.48239 1.58315 1.13385 1.11466 1.19261 0.97030 0.91518 0.79751 1.21360 1.02538 1.27673 1.04605 0.92698 1.24928 0.96698 0.94990 0.97472 1.69925 1.32922 1.29356 1.21220 0.86584 0.83666 0.78042 0.79274 1.20256 1.21161 1.20250 1.20880 0.79276 0.87666 0.85310 1.90669 1.46569 1.19559 1.84954 1.21761 0.95545 0.83450 0.92756 1.87769 1.30358 1.26797 1.83234 1.22888 0.83580 1.02759 0.98572 1.21851 1.00529 0.99607 0.94568 1.21471 0.96876 1.00543 0.96262 1.21545 0.95630 1.00542 0.97960 1.21436 0.99458 0.99697 0.94378 1.21825 0.93494 1.01748 0.98288 0.92624 0.92382 0.92361 0.91347 0.86890 0.94984 0.94216 0.92713 0.92554 0.93689 0.89541 0.91161 0.90217 0.92152 0.91464 0.92188 0.92209 0.92044 0.90937 0.90533 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.31 37.16 0.35 -2.20 16 2 C 0.07 1.29 5.36 -4.05 -0.02 1.27 16 3 N -0.58 -12.63 2.43 -175.06 -0.43 -13.06 16 4 C 0.24 6.49 5.09 -5.19 -0.03 6.47 16 5 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.48 10.26 5.17 -10.98 -0.06 10.21 16 14 O -0.54 -13.77 15.58 5.56 0.09 -13.68 16 15 C 0.11 1.71 0.27 -91.77 -0.02 1.68 16 16 O -0.36 -5.38 5.92 -35.23 -0.21 -5.59 16 17 C 0.02 0.27 10.20 101.05 1.03 1.30 16 18 C -0.13 -1.89 3.75 -26.73 -0.10 -1.99 16 19 C -0.11 -1.30 5.78 -26.73 -0.15 -1.46 16 20 C -0.12 -1.22 5.92 -26.74 -0.16 -1.38 16 21 C -0.11 -1.21 5.78 -26.76 -0.15 -1.37 16 22 C -0.12 -1.57 4.70 -26.76 -0.13 -1.70 16 23 H 0.05 0.80 6.17 -51.93 -0.32 0.48 16 24 H 0.06 0.95 7.61 -51.93 -0.40 0.56 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.11 1.78 3.84 -52.49 -0.20 1.58 16 28 H 0.03 0.87 7.45 -51.93 -0.39 0.48 16 29 H 0.04 1.20 7.45 -51.93 -0.39 0.81 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.06 1.03 7.05 -51.93 -0.37 0.66 16 32 H 0.04 0.61 6.47 -51.93 -0.34 0.27 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.11 6.57 -51.93 -0.34 0.77 16 35 H 0.08 1.25 7.98 -51.93 -0.41 0.83 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.18 3.82 -51.93 -0.20 0.98 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -32.16 325.28 -6.87 -39.03 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.07 Total: 0.35 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 0.13 Total: -2.81 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.31 Total: -39.22 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.12 Total: -19.27 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.16 -6.87 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331049558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.595 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds