Wall clock time and date at job start Mon Mar 30 2020 01:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47088 * 2 1 4 4 C 1.46507 * 119.99911 * 285.42335 * 3 2 1 5 5 C 1.50694 * 109.46997 * 270.00063 * 4 3 2 6 6 H 1.07999 * 120.00347 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00038 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00113 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47309 * 60.00205 * 9 7 5 11 11 H 1.48499 * 109.47298 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47282 * 300.00268 * 9 7 5 13 13 C 1.34776 * 120.00423 * 105.42058 * 3 2 1 14 14 O 1.21280 * 120.00512 * 177.76973 * 13 3 2 15 15 C 1.50702 * 119.99779 * 357.77691 * 13 3 2 16 16 O 1.42907 * 109.47158 * 48.73714 * 15 13 3 17 17 C 1.42894 * 114.00201 * 58.84382 * 16 15 13 18 18 C 1.53001 * 109.47175 * 168.73197 * 15 13 3 19 19 C 1.53002 * 109.47005 * 179.97438 * 18 15 13 20 20 C 1.52995 * 109.47470 * 300.00674 * 19 18 15 21 21 C 1.52993 * 109.47324 * 59.99779 * 20 19 18 22 22 C 1.52995 * 109.47114 * 288.73757 * 15 13 3 23 23 H 1.09002 * 109.47430 * 308.05286 * 1 2 3 24 24 H 1.09003 * 109.47496 * 68.05806 * 1 2 3 25 25 H 1.09003 * 109.47400 * 188.05551 * 1 2 3 26 26 H 1.08994 * 109.47310 * 239.99702 * 2 1 3 27 27 H 1.09003 * 109.47023 * 119.99701 * 2 1 3 28 28 H 1.08999 * 109.46941 * 30.00065 * 4 3 2 29 29 H 1.09003 * 109.46929 * 150.00092 * 4 3 2 30 30 H 0.96995 * 119.99751 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47183 * 300.50845 * 17 16 15 32 32 H 1.09002 * 109.47101 * 60.50657 * 17 16 15 33 33 H 1.09002 * 109.47060 * 180.50527 * 17 16 15 34 34 H 1.08998 * 109.47140 * 300.00344 * 18 15 13 35 35 H 1.09000 * 109.46828 * 60.00167 * 18 15 13 36 36 H 1.08997 * 109.47021 * 180.02562 * 19 18 15 37 37 H 1.09000 * 109.46919 * 60.00556 * 19 18 15 38 38 H 1.09000 * 109.46952 * 299.99861 * 20 19 18 39 39 H 1.09003 * 109.47423 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47321 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47039 * 60.00135 * 21 20 19 42 42 H 1.09000 * 109.46952 * 299.99871 * 22 15 13 43 43 H 1.08997 * 109.47509 * 59.99684 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9443 2.1843 -1.2231 5 6 3.2102 2.0030 -2.0203 6 1 3.9919 1.3549 -1.6525 7 6 3.3706 2.6647 -3.2192 8 7 2.4189 3.4545 -3.6669 9 14 4.9400 2.4407 -4.2071 10 1 5.1002 1.0081 -4.5638 11 1 4.8651 3.2546 -5.4469 12 1 6.1029 2.8817 -3.3956 13 6 2.5355 1.9131 1.1251 14 8 2.9768 3.0428 1.1147 15 6 2.5657 1.1042 2.3963 16 8 3.1051 -0.1909 2.1241 17 6 4.4272 -0.1677 1.5822 18 6 3.4407 1.8137 3.4316 19 6 3.4708 0.9927 4.7224 20 6 2.0490 0.8489 5.2687 21 6 1.1741 0.1394 4.2334 22 6 1.1440 0.9599 2.9428 23 1 -0.3634 0.6334 0.8092 24 1 -0.3634 0.3840 -0.9532 25 1 -0.3634 -1.0175 0.1440 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.0905 1.8613 -1.8187 29 1 1.8275 3.2358 -0.9608 30 1 2.5319 3.9202 -4.5102 31 1 4.4266 0.3915 0.6466 32 1 5.1022 0.3113 2.2914 33 1 4.7611 -1.1883 1.3953 34 1 4.4535 1.9164 3.0422 35 1 3.0293 2.8015 3.6393 36 1 4.0938 1.4983 5.4601 37 1 3.8820 0.0047 4.5150 38 1 1.6378 1.8368 5.4761 39 1 2.0705 0.2643 6.1885 40 1 0.1610 0.0373 4.6224 41 1 1.5853 -0.8486 4.0260 42 1 0.7326 1.9477 3.1505 43 1 0.5207 0.4545 2.2052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331049558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:50 Heat of formation + Delta-G solvation = -107.867476 kcal Electronic energy + Delta-G solvation = -22935.686364 eV Core-core repulsion = 19786.993721 eV Total energy + Delta-G solvation = -3148.692643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.03488 -39.11694 -37.30726 -36.73873 -34.90128 -32.16141 -31.42293 -31.27560 -29.15499 -27.57881 -25.64406 -24.37773 -23.69420 -23.05382 -20.75301 -20.13409 -18.71582 -18.16094 -17.67825 -17.07376 -16.70490 -16.18215 -16.14660 -15.47154 -15.18639 -15.01625 -14.47859 -14.38755 -14.23275 -13.84546 -13.56660 -13.37550 -13.27159 -13.26063 -13.12399 -12.93475 -12.67997 -12.50085 -12.41424 -12.17566 -12.08393 -11.99881 -11.75781 -11.55634 -11.37530 -11.15209 -10.74218 -10.67181 -10.02441 -9.44781 -8.25214 -6.40220 1.32619 1.37129 1.44404 1.63218 2.21979 2.39198 2.66881 3.03825 3.44152 3.71826 3.76224 4.12604 4.24285 4.26543 4.28754 4.38521 4.43467 4.48597 4.52043 4.57924 4.67018 4.69578 4.75585 4.88514 4.94385 4.99158 5.07541 5.08516 5.11392 5.16175 5.26613 5.29058 5.30862 5.39020 5.47422 5.56826 5.60850 5.80900 5.95121 6.03910 6.65933 6.77089 7.23224 7.40420 8.81934 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.006030 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.388851 B = 4642.457606 C = 4970.227470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 N -0.587 5.587 4 C 0.260 3.740 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.278 1.278 13 C 0.474 3.526 14 O -0.595 6.595 15 C 0.119 3.881 16 O -0.351 6.351 17 C 0.018 3.982 18 C -0.127 4.127 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.117 4.117 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.137 0.863 28 H 0.021 0.979 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.014 0.986 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 -11.864 16.751 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.049 4.049 3 N -0.317 5.317 4 C 0.138 3.862 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.201 1.201 12 H -0.203 1.203 13 C 0.262 3.738 14 O -0.476 6.476 15 C 0.077 3.923 16 O -0.269 6.269 17 C -0.078 4.078 18 C -0.165 4.165 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.142 4.142 22 C -0.155 4.155 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.039 0.961 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.600 -11.358 16.598 20.176 hybrid contribution 0.923 1.040 -1.500 2.045 sum -0.677 -10.318 15.098 18.300 Atomic orbital electron populations 1.22242 0.95060 1.03519 1.01332 1.22423 0.95425 0.81620 1.05441 1.48275 1.58555 1.14633 1.10194 1.18713 0.96128 0.89770 0.81548 1.21619 1.03087 1.27974 1.05304 0.93101 1.25871 1.00294 0.94382 0.98581 1.70050 1.34990 1.29996 1.21760 0.85477 0.78817 0.78968 0.77621 1.18393 1.20140 1.20319 1.22016 0.77574 0.87536 0.86690 1.90625 1.48720 1.22259 1.86009 1.21692 0.97785 0.83110 0.89739 1.87757 1.30600 1.25722 1.82839 1.22965 0.83706 1.04285 0.96803 1.21861 0.99007 0.99566 0.96072 1.21462 0.98416 1.00120 0.94385 1.21577 0.94321 1.01008 0.98724 1.21437 1.01098 0.99074 0.92627 1.21898 0.91277 1.02206 1.00073 0.92056 0.94480 0.88440 0.92486 0.84619 0.96070 0.98933 0.92375 0.96730 0.92613 0.86187 0.92907 0.91794 0.90703 0.90803 0.92296 0.89618 0.89734 0.90401 0.91246 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 9.31 71.98 0.67 -4.05 16 2 C 0.07 2.50 5.36 86.38 0.46 2.96 16 3 N -0.59 -26.46 2.43 -826.17 -2.01 -28.47 16 4 C 0.26 14.69 5.09 85.63 0.44 15.13 16 5 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.45 5.46 84.65 0.46 0.92 16 8 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 9 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.47 20.97 5.17 87.66 0.45 21.42 16 14 O -0.59 -32.36 15.58 -3.03 -0.05 -32.40 16 15 C 0.12 3.74 0.27 -11.54 0.00 3.74 16 16 O -0.35 -9.76 5.92 -148.98 -0.88 -10.64 16 17 C 0.02 0.52 10.20 113.37 1.16 1.67 16 18 C -0.13 -3.71 3.75 30.60 0.11 -3.60 16 19 C -0.11 -2.15 5.78 30.59 0.18 -1.97 16 20 C -0.12 -2.00 5.92 30.59 0.18 -1.82 16 21 C -0.11 -1.87 5.78 30.58 0.18 -1.69 16 22 C -0.12 -2.96 4.70 30.58 0.14 -2.82 16 23 H 0.06 1.70 6.17 -2.39 -0.01 1.69 16 24 H 0.04 1.21 7.61 -2.39 -0.02 1.20 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.14 4.05 3.84 -11.26 -0.04 4.01 16 28 H 0.02 1.22 7.45 -2.39 -0.02 1.21 16 29 H -0.01 -0.48 7.45 -2.39 -0.02 -0.50 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.01 0.52 7.05 -2.39 -0.02 0.51 16 32 H 0.06 1.45 6.47 -2.39 -0.02 1.44 16 33 H 0.12 2.56 8.14 -2.39 -0.02 2.55 16 34 H 0.05 1.70 6.57 -2.39 -0.02 1.68 16 35 H 0.06 2.05 7.98 -2.39 -0.02 2.03 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.42 7.68 -2.39 -0.02 1.40 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.35 7.68 -2.39 -0.02 1.34 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.09 2.21 3.82 -2.39 -0.01 2.20 16 Total: -1.00 -74.21 325.28 4.99 -69.22 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.95 Total: 13.84 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 4.67 Total: -2.17 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.72 Total: -85.72 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.93 Total: -43.04 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -74.21 4.99 -69.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331049558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.648 kcal (2) G-P(sol) polarization free energy of solvation -74.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds