Wall clock time and date at job start Mon Mar 30 2020 00:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00294 * 2 1 4 4 H 1.08998 * 109.47315 * 30.00038 * 3 2 1 5 5 C 1.53008 * 109.47111 * 270.00048 * 3 2 1 6 6 C 1.52994 * 109.46912 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47137 * 60.00392 * 6 5 3 8 8 C 1.52996 * 109.47069 * 299.99431 * 7 6 5 9 9 H 1.08998 * 109.47089 * 300.00071 * 8 7 6 10 10 C 1.52998 * 109.47069 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47024 * 65.00692 * 10 8 7 12 12 O 1.21281 * 120.00382 * 359.97438 * 11 10 8 13 13 N 1.34781 * 120.00167 * 180.02562 * 11 10 8 14 14 C 1.46500 * 120.00238 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47086 * 34.99710 * 14 13 11 16 16 C 1.52995 * 109.46835 * 274.99456 * 14 13 11 17 17 C 1.50698 * 109.46975 * 154.99023 * 14 13 11 18 18 H 1.08003 * 120.00248 * 35.01088 * 17 14 13 19 19 C 1.37879 * 120.00061 * 215.00078 * 17 14 13 20 20 N 1.31514 * 120.00065 * 184.92370 * 19 17 14 21 21 Si 1.86799 * 120.00086 * 4.91820 * 19 17 14 22 22 H 1.48496 * 109.46932 * 84.83083 * 21 19 17 23 23 H 1.48491 * 109.47212 * 204.83377 * 21 19 17 24 24 H 1.48507 * 109.46996 * 324.83552 * 21 19 17 25 25 C 1.52998 * 109.47161 * 150.00305 * 3 2 1 26 26 H 1.08997 * 109.46541 * 300.00114 * 1 2 3 27 27 H 1.09001 * 109.46906 * 59.99673 * 1 2 3 28 28 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46422 * 59.99923 * 5 3 2 30 30 H 1.08998 * 109.47023 * 300.00169 * 5 3 2 31 31 H 1.08998 * 109.47537 * 300.00004 * 6 5 3 32 32 H 1.09005 * 109.46975 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.46671 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47543 * 59.99856 * 7 6 5 35 35 H 1.08998 * 109.47651 * 305.00250 * 10 8 7 36 36 H 1.09009 * 109.47154 * 185.00044 * 10 8 7 37 37 H 0.97001 * 119.99924 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.47365 * 295.03446 * 16 14 13 39 39 H 1.09001 * 109.46944 * 175.03330 * 16 14 13 40 40 H 1.08998 * 109.47309 * 55.04126 * 16 14 13 41 41 H 0.96997 * 119.99915 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.47543 * 60.00114 * 25 3 2 43 43 H 1.08993 * 109.47291 * 299.99787 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7713 -1.4426 6 6 2.8395 3.1692 -1.4425 7 6 4.1881 3.1275 -0.7212 8 6 3.9807 2.6617 0.7213 9 1 3.3152 3.3554 1.2350 10 6 5.3294 2.6194 1.4425 11 6 5.8852 4.0159 1.5507 12 8 5.2640 4.9528 1.0954 13 7 7.0731 4.2238 2.1525 14 6 7.6137 5.5814 2.2572 15 1 6.7962 6.2879 2.4010 16 6 8.3691 5.9298 0.9732 17 6 8.5558 5.6578 3.4310 18 1 9.1716 4.8078 3.6854 19 6 8.6317 6.8128 4.1800 20 7 9.5215 6.9148 5.1430 21 14 7.4709 8.2331 3.8268 22 1 6.1900 8.0159 4.5460 23 1 8.0879 9.5029 4.2870 24 1 7.2119 8.3093 2.3665 25 6 3.3590 1.2631 0.7212 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.2569 1.8014 -1.9563 30 1 2.8829 1.0774 -1.9564 31 1 2.1740 3.8629 -0.9288 32 1 2.9869 3.5013 -2.4702 33 1 4.6313 4.1234 -0.7216 34 1 4.8537 2.4339 -1.2349 35 1 6.0231 1.9948 0.8796 36 1 5.1946 2.2036 2.4411 37 1 7.5702 3.4744 2.5164 38 1 9.2384 5.2795 0.8752 39 1 8.6956 6.9690 1.0144 40 1 7.7116 5.7894 0.1153 41 1 9.5752 7.7275 5.6697 42 1 4.0242 0.5692 0.2074 43 1 3.2113 0.9312 1.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331050626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:31 Heat of formation + Delta-G solvation = -118.390701 kcal Electronic energy + Delta-G solvation = -21184.670756 eV Core-core repulsion = 18035.521792 eV Total energy + Delta-G solvation = -3149.148964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.81552 -38.69699 -36.61067 -34.81181 -32.51825 -32.21722 -30.23070 -29.80748 -26.82492 -26.60849 -25.29331 -22.45550 -22.07344 -20.56586 -19.79672 -19.48657 -17.35075 -16.62447 -16.02960 -15.73146 -15.39949 -15.26624 -14.88374 -14.58875 -13.94247 -13.79521 -13.50809 -13.03276 -12.90158 -12.54261 -12.50792 -12.27847 -12.04123 -11.86943 -11.69333 -11.29713 -11.09882 -11.06305 -10.98656 -10.80734 -10.57493 -10.46378 -10.43013 -10.37548 -9.87363 -9.58534 -9.19658 -8.97084 -8.69677 -8.04033 -6.23542 -4.27039 3.25462 3.33521 3.35171 3.40969 3.50585 4.10591 4.32441 4.58670 4.64934 4.92928 5.01326 5.04320 5.11284 5.15428 5.19074 5.26691 5.32214 5.39554 5.44094 5.51951 5.63680 5.74504 5.75546 5.82272 5.91912 5.93690 6.14678 6.17640 6.25850 6.35466 6.49161 6.53669 6.60039 6.69634 6.95767 7.03943 7.20837 7.40199 7.59027 8.15746 8.60927 8.77636 9.04372 9.38975 10.88349 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.003684 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.260729 B = 7599.014860 C = 7706.029903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.066 4.066 9 H 0.078 0.922 10 C -0.138 4.138 11 C 0.500 3.500 12 O -0.558 6.558 13 N -0.706 5.706 14 C 0.231 3.769 15 H 0.049 0.951 16 C -0.147 4.147 17 C -0.531 4.531 18 H 0.078 0.922 19 C 0.080 3.920 20 N -0.890 5.890 21 Si 0.875 3.125 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.261 1.261 25 C -0.111 4.111 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.393 0.607 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.268 0.732 42 H 0.071 0.929 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.431 -11.948 -10.670 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.177 4.177 6 C -0.152 4.152 7 C -0.160 4.160 8 C -0.084 4.084 9 H 0.097 0.903 10 C -0.179 4.179 11 C 0.286 3.714 12 O -0.438 6.438 13 N -0.354 5.354 14 C 0.128 3.872 15 H 0.067 0.933 16 C -0.206 4.206 17 C -0.569 4.569 18 H 0.096 0.904 19 C -0.124 4.124 20 N -0.527 5.527 21 Si 0.702 3.298 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.185 1.185 25 C -0.148 4.148 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.226 0.774 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.650 -11.299 -10.828 21.437 hybrid contribution -0.467 0.604 0.168 0.782 sum -15.117 -10.695 -10.660 21.367 Atomic orbital electron populations 1.22754 0.81484 1.02437 0.99862 1.87897 1.19318 1.28354 1.95102 1.22166 0.95026 0.83934 0.95658 0.92210 1.22041 1.00978 0.97762 0.96884 1.21460 0.97377 0.95728 1.00630 1.21751 0.96665 1.03449 0.94090 1.20819 0.95494 0.95450 0.96686 0.90327 1.21733 0.97797 0.95867 1.02471 1.20571 0.81778 0.90712 0.78371 1.90596 1.59825 1.44551 1.48879 1.46659 1.20108 1.11803 1.56870 1.19094 0.93645 0.80273 0.94181 0.93301 1.22210 0.99607 1.00909 0.97840 1.21035 1.22537 1.01723 1.11556 0.90379 1.24951 0.95010 0.98301 0.94150 1.69885 1.33872 1.28163 1.20732 0.86877 0.81382 0.81710 0.79817 1.19900 1.21222 1.18500 1.21666 0.94986 0.97556 1.00612 0.94126 0.94243 0.89876 0.92389 0.91249 0.91969 0.91895 0.89219 0.92609 0.89361 0.89243 0.77409 0.93491 0.93041 0.95250 0.92258 0.91069 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.39 -4.32 10.35 -35.23 -0.36 -4.68 16 3 C 0.09 0.95 2.61 -26.73 -0.07 0.88 16 4 H 0.06 0.62 7.79 -51.93 -0.40 0.22 16 5 C -0.14 -1.41 5.54 -26.73 -0.15 -1.55 16 6 C -0.11 -1.26 5.92 -26.74 -0.16 -1.42 16 7 C -0.12 -1.57 4.94 -26.73 -0.13 -1.70 16 8 C -0.07 -0.83 1.84 -90.60 -0.17 -0.99 16 9 H 0.08 1.11 7.96 -51.93 -0.41 0.70 16 10 C -0.14 -1.83 5.17 -27.88 -0.14 -1.97 16 11 C 0.50 9.19 7.51 -10.98 -0.08 9.10 16 12 O -0.56 -12.06 13.63 5.56 0.08 -11.99 16 13 N -0.71 -13.96 5.07 -54.93 -0.28 -14.24 16 14 C 0.23 5.47 2.22 -69.09 -0.15 5.32 16 15 H 0.05 1.27 4.73 -51.93 -0.25 1.02 16 16 C -0.15 -3.22 9.47 37.15 0.35 -2.87 16 17 C -0.53 -14.26 9.05 -34.44 -0.31 -14.57 16 18 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 19 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 20 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 21 Si 0.88 21.65 26.99 -169.99 -4.59 17.06 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.26 -6.35 6.82 56.52 0.39 -5.97 16 25 C -0.11 -1.20 4.86 -26.70 -0.13 -1.33 16 26 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.04 0.28 7.87 -51.93 -0.41 -0.12 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 7.87 -51.93 -0.41 0.13 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.42 5.95 -51.93 -0.31 1.11 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.39 6.85 8.59 -40.82 -0.35 6.49 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -30.95 339.36 -7.02 -37.97 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.61 Total: 3.87 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.15 Total: -7.62 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.50 Total: -39.73 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.29 Total: -16.67 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.95 -7.02 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331050626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.420 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds