Wall clock time and date at job start Mon Mar 30 2020 00:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00117 * 2 1 4 4 H 1.09000 * 109.46931 * 29.99507 * 3 2 1 5 5 C 1.53005 * 109.47005 * 269.99884 * 3 2 1 6 6 C 1.52990 * 109.46849 * 299.99961 * 5 3 2 7 7 C 1.52999 * 109.47424 * 299.99863 * 6 5 3 8 8 C 1.52999 * 109.47229 * 60.00020 * 7 6 5 9 9 H 1.08999 * 109.46526 * 59.99949 * 8 7 6 10 10 C 1.52996 * 109.47468 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47046 * 295.00248 * 10 8 7 12 12 O 1.21290 * 119.99977 * 359.97438 * 11 10 8 13 13 N 1.34771 * 120.00516 * 180.02562 * 11 10 8 14 14 C 1.46499 * 120.00694 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.46342 * 324.99575 * 14 13 11 16 16 C 1.52998 * 109.47185 * 84.99510 * 14 13 11 17 17 C 1.50701 * 109.47260 * 204.99997 * 14 13 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27562 * 17 14 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 C 1.52996 * 109.47445 * 149.99620 * 3 2 1 26 26 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47191 * 300.00160 * 1 2 3 28 28 H 1.09001 * 109.47253 * 60.00010 * 1 2 3 29 29 H 1.09007 * 109.46743 * 59.99943 * 5 3 2 30 30 H 1.09001 * 109.46927 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.47618 * 60.00101 * 6 5 3 32 32 H 1.09008 * 109.47168 * 179.97438 * 6 5 3 33 33 H 1.09010 * 109.46967 * 300.00446 * 7 6 5 34 34 H 1.09000 * 109.47659 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47380 * 175.00607 * 10 8 7 36 36 H 1.08994 * 109.47427 * 54.99559 * 10 8 7 37 37 H 0.97006 * 119.99365 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46783 * 180.02562 * 16 14 13 39 39 H 1.09005 * 109.46870 * 300.00240 * 16 14 13 40 40 H 1.08998 * 109.47156 * 60.00179 * 16 14 13 41 41 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.47395 * 300.00489 * 25 3 2 43 43 H 1.08998 * 109.47007 * 179.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.1514 0.7973 -2.1637 7 6 4.5001 0.7551 -1.4424 8 6 4.2927 0.2893 0.0001 9 1 3.8493 -0.7065 0.0001 10 6 5.6412 0.2476 0.7215 11 6 6.5186 -0.8002 0.0864 12 8 6.1056 -1.4502 -0.8507 13 7 7.7616 -1.0160 0.5603 14 6 8.6147 -2.0343 -0.0574 15 1 8.0003 -2.8732 -0.3844 16 6 9.3376 -1.4308 -1.2633 17 6 9.6295 -2.5163 0.9471 18 1 9.6383 -2.1049 1.9457 19 6 10.5505 -3.4779 0.5894 20 7 10.5399 -3.9786 -0.6266 21 14 11.8133 -4.0697 1.8322 22 1 11.2648 -5.2286 2.5817 23 1 13.0514 -4.4804 1.1226 24 1 12.1274 -2.9709 2.7804 25 6 3.3588 1.2633 0.7213 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.2568 1.8014 -1.9564 30 1 2.6606 2.7673 -1.4425 31 1 2.7081 -0.1985 -2.1637 32 1 3.2989 1.1289 -3.1915 33 1 4.9435 1.7509 -1.4424 34 1 5.1656 0.0615 -1.9564 35 1 5.4841 0.0019 1.7718 36 1 6.1247 1.2214 0.6446 37 1 8.0917 -0.4965 1.3101 38 1 9.9720 -2.1887 -1.7231 39 1 8.6035 -1.0823 -1.9898 40 1 9.9519 -0.5919 -0.9363 41 1 11.1881 -4.6548 -0.8783 42 1 3.2111 0.9314 1.7490 43 1 3.8023 2.2590 0.7209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331050629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:35 Heat of formation + Delta-G solvation = -115.052426 kcal Electronic energy + Delta-G solvation = -21321.278494 eV Core-core repulsion = 18172.274289 eV Total energy + Delta-G solvation = -3149.004206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75330 -38.54575 -36.15588 -34.64363 -32.41239 -32.07904 -30.20758 -29.06661 -26.75312 -26.42594 -25.19978 -22.46883 -22.01264 -20.56428 -19.50232 -19.23173 -17.02060 -16.29956 -15.79021 -15.62371 -15.40520 -15.10518 -14.74803 -14.44062 -14.04399 -13.44885 -13.37044 -12.89415 -12.58449 -12.38438 -12.28168 -12.02128 -11.87910 -11.67987 -11.39239 -11.25761 -11.01873 -10.93202 -10.83079 -10.65523 -10.37644 -10.25739 -10.19110 -10.12801 -10.01254 -9.47707 -9.00095 -8.75831 -8.48034 -7.79600 -6.08222 -4.17283 3.26890 3.33309 3.35237 3.55318 3.71633 4.18868 4.42822 4.68616 4.76184 4.89596 5.14509 5.17569 5.23267 5.24117 5.29454 5.34226 5.50488 5.52008 5.53784 5.62263 5.77521 5.83660 5.88086 5.90944 5.96456 6.02191 6.31772 6.41427 6.44355 6.74034 6.81026 6.88676 7.03111 7.16467 7.21692 7.55788 7.64156 7.75771 7.98189 8.20872 8.77215 8.85118 9.26279 9.51045 10.97714 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038728 B = 0.003568 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.824726 B = 7845.723468 C = 8040.164770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.090 3.910 4 H 0.055 0.945 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.063 4.063 9 H 0.086 0.914 10 C -0.140 4.140 11 C 0.500 3.500 12 O -0.552 6.552 13 N -0.713 5.713 14 C 0.264 3.736 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.533 4.533 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.112 4.112 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.387 0.613 38 H 0.089 0.911 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.264 0.736 42 H 0.067 0.933 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 12.834 2.036 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C 0.033 3.967 4 H 0.073 0.927 5 C -0.178 4.178 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.082 4.082 9 H 0.105 0.895 10 C -0.180 4.180 11 C 0.285 3.715 12 O -0.431 6.431 13 N -0.361 5.361 14 C 0.162 3.838 15 H 0.065 0.935 16 C -0.205 4.205 17 C -0.571 4.571 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.522 5.522 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.149 4.149 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.219 0.781 38 H 0.107 0.893 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.074 12.042 1.237 20.122 hybrid contribution 0.690 0.214 1.042 1.268 sum -15.384 12.256 2.278 19.801 Atomic orbital electron populations 1.22752 0.81895 1.02544 0.99428 1.88006 1.18795 1.27616 1.94947 1.22114 0.94687 0.84468 0.95465 0.92670 1.22035 0.99934 0.99606 0.96202 1.21383 0.95634 0.99824 0.98000 1.21701 0.97250 1.01015 0.95639 1.20762 0.92820 1.00300 0.94329 0.89533 1.21777 0.96335 0.99114 1.00813 1.20484 0.82600 0.84313 0.84095 1.90615 1.73786 1.49698 1.28990 1.46552 1.14432 1.40047 1.35079 1.18699 0.88241 0.85749 0.91133 0.93464 1.22066 0.99552 1.00453 0.98394 1.21246 1.15326 1.22765 0.97783 0.92153 1.24893 0.97448 0.95968 0.95466 1.69906 1.36235 1.28149 1.17864 0.86459 0.80632 0.79058 0.80997 1.20576 1.21102 1.19879 1.21724 0.93811 1.00231 0.99147 0.89835 0.94444 0.94406 0.92457 0.91374 0.91266 0.92662 0.93255 0.89397 0.89709 0.89882 0.78107 0.89253 0.96693 0.95615 0.92634 0.91467 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.37 -4.62 9.00 -35.23 -0.32 -4.93 16 3 C 0.09 0.95 2.92 -26.73 -0.08 0.88 16 4 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 5 C -0.14 -1.44 5.63 -26.73 -0.15 -1.59 16 6 C -0.11 -1.41 5.78 -26.74 -0.15 -1.57 16 7 C -0.12 -1.71 4.94 -26.73 -0.13 -1.85 16 8 C -0.06 -0.90 1.69 -90.62 -0.15 -1.05 16 9 H 0.09 1.48 7.50 -51.93 -0.39 1.09 16 10 C -0.14 -2.03 5.17 -27.88 -0.14 -2.17 16 11 C 0.50 10.03 7.51 -10.99 -0.08 9.95 16 12 O -0.55 -13.17 13.63 5.55 0.08 -13.09 16 13 N -0.71 -15.14 5.07 -54.93 -0.28 -15.42 16 14 C 0.26 6.86 2.56 -69.08 -0.18 6.68 16 15 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 16 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 17 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -25.32 11.31 55.43 0.63 -24.70 16 21 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.11 -1.22 4.94 -26.73 -0.13 -1.36 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 29 H 0.06 0.54 7.87 -51.92 -0.41 0.13 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 32 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.09 1.58 5.95 -51.93 -0.31 1.27 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.39 7.11 8.54 -40.82 -0.35 6.76 16 38 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -31.10 337.51 -7.55 -38.66 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.56 Total: 5.58 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.16 Total: -7.08 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.35 Total: -40.11 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.24 Total: -18.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.10 -7.55 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331050629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.394 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds