Wall clock time and date at job start Mon Mar 30 2020 00:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00117 * 2 1 4 4 H 1.09000 * 109.46931 * 29.99507 * 3 2 1 5 5 C 1.53005 * 109.47005 * 269.99884 * 3 2 1 6 6 C 1.52990 * 109.46849 * 299.99961 * 5 3 2 7 7 C 1.52999 * 109.47424 * 299.99863 * 6 5 3 8 8 C 1.52999 * 109.47229 * 60.00020 * 7 6 5 9 9 H 1.08999 * 109.46526 * 59.99949 * 8 7 6 10 10 C 1.52996 * 109.47468 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47046 * 295.00248 * 10 8 7 12 12 O 1.21290 * 119.99977 * 359.97438 * 11 10 8 13 13 N 1.34771 * 120.00516 * 180.02562 * 11 10 8 14 14 C 1.46499 * 120.00694 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.46342 * 324.99575 * 14 13 11 16 16 C 1.52998 * 109.47185 * 84.99510 * 14 13 11 17 17 C 1.50701 * 109.47260 * 204.99997 * 14 13 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27562 * 17 14 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 C 1.52996 * 109.47445 * 149.99620 * 3 2 1 26 26 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47191 * 300.00160 * 1 2 3 28 28 H 1.09001 * 109.47253 * 60.00010 * 1 2 3 29 29 H 1.09007 * 109.46743 * 59.99943 * 5 3 2 30 30 H 1.09001 * 109.46927 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.47618 * 60.00101 * 6 5 3 32 32 H 1.09008 * 109.47168 * 179.97438 * 6 5 3 33 33 H 1.09010 * 109.46967 * 300.00446 * 7 6 5 34 34 H 1.09000 * 109.47659 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47380 * 175.00607 * 10 8 7 36 36 H 1.08994 * 109.47427 * 54.99559 * 10 8 7 37 37 H 0.97006 * 119.99365 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46783 * 180.02562 * 16 14 13 39 39 H 1.09005 * 109.46870 * 300.00240 * 16 14 13 40 40 H 1.08998 * 109.47156 * 60.00179 * 16 14 13 41 41 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.47395 * 300.00489 * 25 3 2 43 43 H 1.08998 * 109.47007 * 179.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.1514 0.7973 -2.1637 7 6 4.5001 0.7551 -1.4424 8 6 4.2927 0.2893 0.0001 9 1 3.8493 -0.7065 0.0001 10 6 5.6412 0.2476 0.7215 11 6 6.5186 -0.8002 0.0864 12 8 6.1056 -1.4502 -0.8507 13 7 7.7616 -1.0160 0.5603 14 6 8.6147 -2.0343 -0.0574 15 1 8.0003 -2.8732 -0.3844 16 6 9.3376 -1.4308 -1.2633 17 6 9.6295 -2.5163 0.9471 18 1 9.6383 -2.1049 1.9457 19 6 10.5505 -3.4779 0.5894 20 7 10.5399 -3.9786 -0.6266 21 14 11.8133 -4.0697 1.8322 22 1 11.2648 -5.2286 2.5817 23 1 13.0514 -4.4804 1.1226 24 1 12.1274 -2.9709 2.7804 25 6 3.3588 1.2633 0.7213 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.2568 1.8014 -1.9564 30 1 2.6606 2.7673 -1.4425 31 1 2.7081 -0.1985 -2.1637 32 1 3.2989 1.1289 -3.1915 33 1 4.9435 1.7509 -1.4424 34 1 5.1656 0.0615 -1.9564 35 1 5.4841 0.0019 1.7718 36 1 6.1247 1.2214 0.6446 37 1 8.0917 -0.4965 1.3101 38 1 9.9720 -2.1887 -1.7231 39 1 8.6035 -1.0823 -1.9898 40 1 9.9519 -0.5919 -0.9363 41 1 11.1881 -4.6548 -0.8783 42 1 3.2111 0.9314 1.7490 43 1 3.8023 2.2590 0.7209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331050629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:35 Heat of formation + Delta-G solvation = -135.480439 kcal Electronic energy + Delta-G solvation = -21322.164320 eV Core-core repulsion = 18172.274289 eV Total energy + Delta-G solvation = -3149.890031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97735 -39.85903 -37.27571 -36.46981 -34.29354 -33.30004 -31.17947 -30.86634 -27.90283 -27.33509 -27.23309 -23.55245 -23.37461 -22.05772 -20.97521 -20.46712 -18.82065 -17.48560 -17.19947 -16.92002 -16.61326 -16.38846 -15.97875 -15.86838 -15.53969 -14.64307 -14.59890 -14.41944 -14.13129 -13.73201 -13.40460 -13.30433 -13.11235 -12.94055 -12.84931 -12.77195 -12.63114 -12.39704 -12.24739 -12.12426 -12.09339 -11.84126 -11.39960 -11.15494 -11.12447 -11.07637 -10.62827 -10.31559 -10.29747 -9.66111 -8.17116 -6.35050 1.44544 1.45432 1.56280 1.95163 2.37297 2.73900 3.00323 3.12965 3.77048 3.84496 3.94947 4.11123 4.25112 4.34365 4.45159 4.51589 4.59549 4.60594 4.66154 4.73860 4.76548 4.81214 4.86764 4.90283 4.91572 4.94747 5.01784 5.10549 5.11409 5.32573 5.37845 5.42626 5.45683 5.55747 5.65770 5.70535 5.73475 5.94862 6.12168 6.44420 6.74127 7.06662 7.33704 7.67949 8.89235 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038728 B = 0.003568 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.824726 B = 7845.723468 C = 8040.164770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.085 3.915 4 H 0.083 0.917 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.117 4.117 8 C -0.060 4.060 9 H 0.046 0.954 10 C -0.127 4.127 11 C 0.492 3.508 12 O -0.597 6.597 13 N -0.711 5.711 14 C 0.270 3.730 15 H -0.007 1.007 16 C -0.131 4.131 17 C -0.547 4.547 18 H 0.074 0.926 19 C 0.012 3.988 20 N -0.919 5.919 21 Si 0.974 3.026 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.258 1.258 25 C -0.106 4.106 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.404 0.596 38 H 0.064 0.936 39 H 0.010 0.990 40 H 0.040 0.960 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.444 15.484 4.271 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.027 3.973 4 H 0.101 0.899 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.079 4.079 9 H 0.064 0.936 10 C -0.166 4.166 11 C 0.280 3.720 12 O -0.479 6.479 13 N -0.360 5.360 14 C 0.166 3.834 15 H 0.011 0.989 16 C -0.190 4.190 17 C -0.585 4.585 18 H 0.092 0.908 19 C -0.188 4.188 20 N -0.558 5.558 21 Si 0.798 3.202 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.182 1.182 25 C -0.143 4.143 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.239 0.761 38 H 0.083 0.917 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.514 14.729 3.501 22.403 hybrid contribution 0.762 -0.654 0.275 1.041 sum -15.752 14.075 3.775 21.459 Atomic orbital electron populations 1.22896 0.80453 1.03060 1.00674 1.87986 1.20604 1.29063 1.95133 1.22278 0.94937 0.84386 0.95669 0.89895 1.22014 0.99712 0.99501 0.95926 1.21333 0.95351 0.99370 0.98655 1.21629 0.97359 1.00710 0.95757 1.20687 0.93187 0.99398 0.94634 0.93568 1.21805 0.95186 0.98263 1.01373 1.21572 0.82381 0.84696 0.83363 1.90611 1.74526 1.51587 1.31132 1.46333 1.14660 1.39399 1.35603 1.18283 0.87927 0.85571 0.91637 0.98921 1.21876 0.99073 1.00013 0.98077 1.21582 1.15418 1.23124 0.98403 0.90812 1.25847 0.99598 0.96025 0.97344 1.70064 1.37105 1.28654 1.19953 0.85317 0.77633 0.78715 0.78494 1.20393 1.20934 1.18197 1.21726 0.93262 1.00390 0.98936 0.89889 0.92749 0.93469 0.91441 0.89289 0.94061 0.92251 0.91170 0.94017 0.87202 0.86500 0.76079 0.91685 0.97114 0.94059 0.92593 0.90702 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 113.37 1.23 1.64 16 2 O -0.41 -9.65 9.00 -148.98 -1.34 -10.99 16 3 C 0.08 1.55 2.92 30.59 0.09 1.63 16 4 H 0.08 1.09 7.79 -2.39 -0.02 1.07 16 5 C -0.13 -2.41 5.63 30.59 0.17 -2.24 16 6 C -0.11 -2.77 5.78 30.59 0.18 -2.60 16 7 C -0.12 -3.37 4.94 30.59 0.15 -3.22 16 8 C -0.06 -1.64 1.69 -10.79 -0.02 -1.66 16 9 H 0.05 1.64 7.50 -2.39 -0.02 1.62 16 10 C -0.13 -3.41 5.17 29.85 0.15 -3.26 16 11 C 0.49 19.99 7.51 87.66 0.66 20.65 16 12 O -0.60 -30.16 13.63 -3.06 -0.04 -30.20 16 13 N -0.71 -30.21 5.07 -446.09 -2.26 -32.47 16 14 C 0.27 14.46 2.56 44.24 0.11 14.58 16 15 H -0.01 -0.46 7.58 -2.38 -0.02 -0.47 16 16 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 17 C -0.55 -29.66 8.73 25.60 0.22 -29.43 16 18 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 19 C 0.01 0.64 5.30 84.65 0.45 1.09 16 20 N -0.92 -54.04 11.31 21.45 0.24 -53.80 16 21 Si 0.97 42.63 29.54 68.60 2.03 44.65 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 C -0.11 -1.98 4.94 30.59 0.15 -1.82 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 28 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 29 H 0.07 1.09 7.87 -2.38 -0.02 1.07 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.25 7.68 -2.39 -0.02 1.23 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.04 1.58 5.95 -2.39 -0.01 1.57 16 35 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.40 14.24 8.54 -92.70 -0.79 13.45 16 38 H 0.06 3.72 6.06 -2.38 -0.01 3.71 16 39 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -71.77 337.51 3.02 -68.75 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.18 Total: 24.93 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.21 Total: -10.87 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.02 Total: -86.27 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.38 Total: -41.19 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.77 3.02 -68.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331050629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.731 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds