Wall clock time and date at job start Mon Mar 30 2020 00:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42909 * 114.00285 * 2 1 4 4 H 1.09000 * 109.46355 * 30.00021 * 3 2 1 5 5 C 1.52997 * 109.47135 * 269.99884 * 3 2 1 6 6 C 1.52999 * 109.46991 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 3 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 5 9 9 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 10 10 C 1.52996 * 109.47131 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.46962 * 65.00293 * 10 8 7 12 12 O 1.21287 * 119.99980 * 359.97438 * 11 10 8 13 13 N 1.34782 * 120.00245 * 180.02562 * 11 10 8 14 14 C 1.46498 * 119.99965 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47318 * 325.00066 * 14 13 11 16 16 C 1.53004 * 109.46788 * 85.00030 * 14 13 11 17 17 C 1.50705 * 109.46883 * 204.99780 * 14 13 11 18 18 H 1.08005 * 119.99948 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99823 * 180.02562 * 17 14 13 20 20 N 1.31514 * 120.00016 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99869 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.46873 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47296 * 119.99572 * 21 19 17 24 24 H 1.48500 * 109.46985 * 239.99607 * 21 19 17 25 25 C 1.52996 * 109.47119 * 149.99866 * 3 2 1 26 26 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47333 * 300.00140 * 1 2 3 28 28 H 1.09000 * 109.46654 * 59.99947 * 1 2 3 29 29 H 1.09002 * 109.47153 * 59.99856 * 5 3 2 30 30 H 1.08993 * 109.47194 * 300.00144 * 5 3 2 31 31 H 1.08993 * 109.47839 * 300.00447 * 6 5 3 32 32 H 1.09000 * 109.47160 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46801 * 59.99811 * 7 6 5 34 34 H 1.09001 * 109.46998 * 179.97438 * 7 6 5 35 35 H 1.08996 * 109.47548 * 185.00027 * 10 8 7 36 36 H 1.08997 * 109.47395 * 305.00575 * 10 8 7 37 37 H 0.97004 * 119.99482 * 359.97438 * 13 11 10 38 38 H 1.09007 * 109.46503 * 179.97438 * 16 14 13 39 39 H 1.08993 * 109.47460 * 299.99380 * 16 14 13 40 40 H 1.09000 * 109.47162 * 59.99940 * 16 14 13 41 41 H 0.96997 * 120.00105 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47452 * 60.00020 * 25 3 2 43 43 H 1.09000 * 109.47054 * 300.00180 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2178 1.7714 -1.4425 6 6 2.8396 3.1693 -1.4424 7 6 4.1882 3.1275 -0.7210 8 6 3.9807 2.6616 0.7215 9 1 3.3152 3.3554 1.2351 10 6 5.3294 2.6192 1.4427 11 6 5.8853 4.0158 1.5509 12 8 5.2641 4.9527 1.0955 13 7 7.0732 4.2235 2.1528 14 6 7.6138 5.5811 2.2574 15 1 7.3447 6.1490 1.3668 16 6 7.0324 6.2675 3.4951 17 6 9.1147 5.5162 2.3774 18 1 9.6157 4.5594 2.3754 19 6 9.8482 6.6783 2.4897 20 7 9.2381 7.8434 2.4916 21 14 11.7085 6.5979 2.6377 22 1 12.1464 5.1792 2.6099 23 1 12.3275 7.3297 1.5034 24 1 12.1306 7.2209 3.9179 25 6 3.3589 1.2632 0.7213 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.2570 1.8015 -1.9563 30 1 2.8830 1.0775 -1.9563 31 1 2.1741 3.8631 -0.9287 32 1 2.9870 3.5015 -2.4701 33 1 4.8537 2.4338 -1.2348 34 1 4.6315 4.1233 -0.7213 35 1 5.1946 2.2035 2.4412 36 1 6.0230 1.9947 0.8797 37 1 7.5702 3.4741 2.5166 38 1 7.4351 7.2775 3.5732 39 1 5.9470 6.3145 3.4083 40 1 7.3016 5.6996 4.3857 41 1 9.7541 8.6609 2.5702 42 1 4.0242 0.5693 0.2075 43 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331050630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:37 Heat of formation + Delta-G solvation = -118.070540 kcal Electronic energy + Delta-G solvation = -21081.891545 eV Core-core repulsion = 17932.756464 eV Total energy + Delta-G solvation = -3149.135081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73780 -38.58989 -36.54387 -34.71623 -32.48839 -32.15436 -30.14839 -29.10152 -26.68429 -26.55850 -25.23297 -22.40319 -22.04921 -20.64849 -19.78085 -19.28711 -17.06756 -16.58433 -15.75005 -15.65889 -15.23313 -15.15532 -14.93015 -14.51549 -14.05250 -13.73535 -13.36231 -12.98680 -12.90498 -12.45386 -12.16630 -12.04129 -11.90661 -11.70378 -11.45916 -11.07887 -11.02167 -10.95869 -10.91655 -10.70972 -10.41825 -10.38516 -10.34820 -10.23105 -10.20191 -9.54694 -9.02182 -8.84976 -8.53885 -7.84891 -6.11669 -4.20719 3.23761 3.31552 3.34284 3.47277 3.54273 4.18184 4.41301 4.63415 4.70155 4.97620 5.06146 5.08656 5.18676 5.20646 5.22677 5.29934 5.37099 5.42793 5.48270 5.56981 5.69760 5.80081 5.84023 5.86243 5.97068 5.98107 6.20608 6.23517 6.31983 6.58026 6.67225 6.84515 6.98862 7.06883 7.17509 7.50629 7.59588 7.71705 7.93871 8.16929 8.71937 8.80749 9.19520 9.47448 10.94320 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044651 B = 0.003300 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.937899 B = 8482.886018 C = 8547.575503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.123 4.123 8 C -0.064 4.064 9 H 0.078 0.922 10 C -0.138 4.138 11 C 0.500 3.500 12 O -0.554 6.554 13 N -0.712 5.712 14 C 0.264 3.736 15 H 0.048 0.952 16 C -0.147 4.147 17 C -0.532 4.532 18 H 0.061 0.939 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.901 3.099 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.111 4.111 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.388 0.612 38 H 0.089 0.911 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.406 -13.571 -4.061 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.177 4.177 6 C -0.152 4.152 7 C -0.160 4.160 8 C -0.083 4.083 9 H 0.096 0.904 10 C -0.179 4.179 11 C 0.285 3.715 12 O -0.434 6.434 13 N -0.359 5.359 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.205 4.205 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.728 3.272 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.148 4.148 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.220 0.780 38 H 0.108 0.892 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.672 -12.838 -4.368 19.256 hybrid contribution 1.048 -0.157 0.319 1.107 sum -12.623 -12.994 -4.048 18.563 Atomic orbital electron populations 1.22750 0.81517 1.02401 0.99862 1.87897 1.19295 1.28416 1.95109 1.22169 0.95005 0.83874 0.95714 0.92211 1.22040 1.00962 0.97833 0.96826 1.21462 0.97388 0.95640 1.00695 1.21758 0.96631 1.03617 0.94016 1.20804 0.95459 0.95311 0.96768 0.90372 1.21732 0.97825 0.96136 1.02188 1.20462 0.81949 0.90526 0.78533 1.90608 1.59425 1.44537 1.48784 1.46558 1.19882 1.12242 1.57259 1.18713 0.92281 0.77315 0.95500 0.93445 1.22073 0.96647 1.03765 0.98040 1.21280 0.90781 0.93167 1.51873 0.92072 1.24898 0.98940 0.95205 0.94747 1.69914 1.35460 0.97461 1.49312 0.86404 0.84869 0.78166 0.77716 1.19737 1.20885 1.20890 1.21669 0.94995 0.97656 1.00499 0.89911 0.94149 0.94230 0.92408 0.91264 0.91959 0.91856 0.92617 0.89069 0.89556 0.89461 0.78005 0.89233 0.96693 0.95567 0.92664 0.91094 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.39 -4.41 10.35 -35.23 -0.36 -4.77 16 3 C 0.09 0.98 2.61 -26.73 -0.07 0.91 16 4 H 0.06 0.64 7.79 -51.93 -0.40 0.23 16 5 C -0.14 -1.47 5.54 -26.73 -0.15 -1.62 16 6 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 7 C -0.12 -1.68 4.94 -26.73 -0.13 -1.81 16 8 C -0.06 -0.85 1.84 -90.60 -0.17 -1.01 16 9 H 0.08 1.14 7.96 -51.93 -0.41 0.72 16 10 C -0.14 -1.91 5.17 -27.88 -0.14 -2.05 16 11 C 0.50 9.63 7.51 -10.98 -0.08 9.55 16 12 O -0.55 -12.64 13.63 5.55 0.08 -12.57 16 13 N -0.71 -14.69 5.07 -54.93 -0.28 -14.97 16 14 C 0.26 6.72 2.56 -69.08 -0.18 6.55 16 15 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 16 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 17 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 19 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 21 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.11 -1.24 4.85 -26.71 -0.13 -1.37 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 29 H 0.06 0.55 7.87 -51.93 -0.41 0.15 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.55 5.95 -51.93 -0.31 1.25 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.39 6.93 8.54 -40.82 -0.35 6.59 16 38 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -30.26 339.60 -7.62 -37.88 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.61 Total: 5.16 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.17 Total: -7.13 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.35 Total: -39.36 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.29 Total: -17.34 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.26 -7.62 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331050630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.194 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds