Wall clock time and date at job start Mon Mar 30 2020 00:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42909 * 114.00285 * 2 1 4 4 H 1.09000 * 109.46355 * 30.00021 * 3 2 1 5 5 C 1.52997 * 109.47135 * 269.99884 * 3 2 1 6 6 C 1.52999 * 109.46991 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 3 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 5 9 9 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 10 10 C 1.52996 * 109.47131 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.46962 * 65.00293 * 10 8 7 12 12 O 1.21287 * 119.99980 * 359.97438 * 11 10 8 13 13 N 1.34782 * 120.00245 * 180.02562 * 11 10 8 14 14 C 1.46498 * 119.99965 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47318 * 325.00066 * 14 13 11 16 16 C 1.53004 * 109.46788 * 85.00030 * 14 13 11 17 17 C 1.50705 * 109.46883 * 204.99780 * 14 13 11 18 18 H 1.08005 * 119.99948 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99823 * 180.02562 * 17 14 13 20 20 N 1.31514 * 120.00016 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99869 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.46873 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47296 * 119.99572 * 21 19 17 24 24 H 1.48500 * 109.46985 * 239.99607 * 21 19 17 25 25 C 1.52996 * 109.47119 * 149.99866 * 3 2 1 26 26 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47333 * 300.00140 * 1 2 3 28 28 H 1.09000 * 109.46654 * 59.99947 * 1 2 3 29 29 H 1.09002 * 109.47153 * 59.99856 * 5 3 2 30 30 H 1.08993 * 109.47194 * 300.00144 * 5 3 2 31 31 H 1.08993 * 109.47839 * 300.00447 * 6 5 3 32 32 H 1.09000 * 109.47160 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46801 * 59.99811 * 7 6 5 34 34 H 1.09001 * 109.46998 * 179.97438 * 7 6 5 35 35 H 1.08996 * 109.47548 * 185.00027 * 10 8 7 36 36 H 1.08997 * 109.47395 * 305.00575 * 10 8 7 37 37 H 0.97004 * 119.99482 * 359.97438 * 13 11 10 38 38 H 1.09007 * 109.46503 * 179.97438 * 16 14 13 39 39 H 1.08993 * 109.47460 * 299.99380 * 16 14 13 40 40 H 1.09000 * 109.47162 * 59.99940 * 16 14 13 41 41 H 0.96997 * 120.00105 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47452 * 60.00020 * 25 3 2 43 43 H 1.09000 * 109.47054 * 300.00180 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2178 1.7714 -1.4425 6 6 2.8396 3.1693 -1.4424 7 6 4.1882 3.1275 -0.7210 8 6 3.9807 2.6616 0.7215 9 1 3.3152 3.3554 1.2351 10 6 5.3294 2.6192 1.4427 11 6 5.8853 4.0158 1.5509 12 8 5.2641 4.9527 1.0955 13 7 7.0732 4.2235 2.1528 14 6 7.6138 5.5811 2.2574 15 1 7.3447 6.1490 1.3668 16 6 7.0324 6.2675 3.4951 17 6 9.1147 5.5162 2.3774 18 1 9.6157 4.5594 2.3754 19 6 9.8482 6.6783 2.4897 20 7 9.2381 7.8434 2.4916 21 14 11.7085 6.5979 2.6377 22 1 12.1464 5.1792 2.6099 23 1 12.3275 7.3297 1.5034 24 1 12.1306 7.2209 3.9179 25 6 3.3589 1.2632 0.7213 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.2570 1.8015 -1.9563 30 1 2.8830 1.0775 -1.9563 31 1 2.1741 3.8631 -0.9287 32 1 2.9870 3.5015 -2.4701 33 1 4.8537 2.4338 -1.2348 34 1 4.6315 4.1233 -0.7213 35 1 5.1946 2.2035 2.4412 36 1 6.0230 1.9947 0.8797 37 1 7.5702 3.4741 2.5166 38 1 7.4351 7.2775 3.5732 39 1 5.9470 6.3145 3.4083 40 1 7.3016 5.6996 4.3857 41 1 9.7541 8.6609 2.5702 42 1 4.0242 0.5693 0.2075 43 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331050630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:36 Heat of formation + Delta-G solvation = -137.308362 kcal Electronic energy + Delta-G solvation = -21082.725759 eV Core-core repulsion = 17932.756464 eV Total energy + Delta-G solvation = -3149.969296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97442 -39.81841 -37.57763 -36.54311 -34.29546 -33.37956 -31.15755 -30.81865 -27.90572 -27.31698 -27.26386 -23.50134 -23.33683 -22.08376 -21.00866 -20.74208 -18.82280 -17.51318 -17.34626 -17.03038 -16.54744 -16.24875 -16.04048 -15.95491 -15.41207 -14.85767 -14.60884 -14.39734 -14.22816 -13.85673 -13.68618 -13.28925 -13.12308 -12.88188 -12.86597 -12.73188 -12.60302 -12.40484 -12.26235 -12.11168 -11.92165 -11.90380 -11.47039 -11.34291 -11.26456 -11.07743 -10.63207 -10.44532 -10.33823 -9.65693 -8.17481 -6.34855 1.43932 1.44897 1.57047 1.93536 2.36458 2.62210 2.92737 3.12977 3.69340 3.77742 3.98916 4.12825 4.15112 4.27146 4.35089 4.51745 4.53307 4.55928 4.59149 4.68711 4.72462 4.77137 4.80210 4.86145 4.89803 4.93402 5.06244 5.08645 5.11719 5.24246 5.27840 5.35570 5.44215 5.51592 5.57607 5.65824 5.73001 5.94343 6.12311 6.31372 6.74547 7.05561 7.33825 7.66060 8.88967 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044651 B = 0.003300 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.937899 B = 8482.886018 C = 8547.575503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.089 3.911 4 H 0.060 0.940 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.122 4.122 8 C -0.060 4.060 9 H 0.060 0.940 10 C -0.126 4.126 11 C 0.494 3.506 12 O -0.594 6.594 13 N -0.711 5.711 14 C 0.270 3.730 15 H -0.004 1.004 16 C -0.133 4.133 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.012 3.988 20 N -0.919 5.919 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.284 1.284 24 H -0.279 1.279 25 C -0.102 4.102 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.404 0.596 38 H 0.064 0.936 39 H 0.011 0.989 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.077 0.923 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 -16.160 -3.797 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.031 3.969 4 H 0.079 0.921 5 C -0.169 4.169 6 C -0.148 4.148 7 C -0.160 4.160 8 C -0.079 4.079 9 H 0.078 0.922 10 C -0.165 4.165 11 C 0.282 3.718 12 O -0.476 6.476 13 N -0.360 5.360 14 C 0.167 3.833 15 H 0.014 0.986 16 C -0.192 4.192 17 C -0.584 4.584 18 H 0.091 0.909 19 C -0.188 4.188 20 N -0.557 5.557 21 Si 0.797 3.203 22 H -0.183 1.183 23 H -0.210 1.210 24 H -0.204 1.204 25 C -0.140 4.140 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.239 0.761 38 H 0.083 0.917 39 H 0.030 0.970 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.514 -15.474 -4.097 20.949 hybrid contribution 0.915 0.673 0.199 1.153 sum -12.600 -14.801 -3.898 19.825 Atomic orbital electron populations 1.22948 0.80014 1.03683 1.00540 1.87864 1.20988 1.28277 1.95209 1.22137 0.94942 0.84063 0.95712 0.92147 1.21967 1.01408 0.96596 0.96974 1.21414 0.96245 0.96608 1.00578 1.21693 0.97704 1.01472 0.95122 1.20738 0.94918 0.96370 0.95873 0.92190 1.21744 0.98177 0.92224 1.04405 1.21465 0.80931 0.92508 0.76894 1.90603 1.60342 1.46644 1.50040 1.46339 1.20721 1.10881 1.58033 1.18286 0.92450 0.79347 0.93260 0.98580 1.21892 0.96175 1.02577 0.98555 1.21610 0.91337 0.93771 1.51647 0.90891 1.25822 1.03866 0.94791 0.94279 1.70064 1.37356 0.98209 1.50098 0.85293 0.78790 0.78711 0.77507 1.18296 1.21007 1.20442 1.21563 0.95174 0.95905 1.01351 0.88405 0.93547 0.93501 0.91223 0.91195 0.92628 0.91392 0.91722 0.93071 0.86661 0.87041 0.76091 0.91691 0.96962 0.94160 0.92606 0.90425 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.40 -8.17 10.35 -148.98 -1.54 -9.72 16 3 C 0.09 1.76 2.61 30.59 0.08 1.84 16 4 H 0.06 1.18 7.79 -2.39 -0.02 1.16 16 5 C -0.13 -2.54 5.54 30.59 0.17 -2.38 16 6 C -0.11 -2.53 5.92 30.60 0.18 -2.35 16 7 C -0.12 -3.33 4.94 30.60 0.15 -3.18 16 8 C -0.06 -1.50 1.84 -10.78 -0.02 -1.52 16 9 H 0.06 1.73 7.96 -2.39 -0.02 1.71 16 10 C -0.13 -3.21 5.17 29.85 0.15 -3.06 16 11 C 0.49 19.04 7.51 87.66 0.66 19.69 16 12 O -0.59 -28.20 13.63 -3.05 -0.04 -28.24 16 13 N -0.71 -29.18 5.07 -446.07 -2.26 -31.44 16 14 C 0.27 14.11 2.56 44.25 0.11 14.23 16 15 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 16 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 17 C -0.55 -29.03 8.73 25.60 0.22 -28.80 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C 0.01 0.66 5.30 84.65 0.45 1.11 16 20 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 21 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 C -0.10 -2.04 4.85 30.61 0.15 -1.89 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 28 H 0.05 0.58 7.87 -2.39 -0.02 0.56 16 29 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.82 5.95 -2.39 -0.01 1.80 16 35 H 0.12 2.34 8.14 -2.39 -0.02 2.33 16 36 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.40 13.82 8.54 -92.71 -0.79 13.03 16 38 H 0.06 3.65 6.07 -2.38 -0.01 3.64 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.07 339.60 2.81 -64.27 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.18 Total: 24.77 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 4.20 Total: -10.90 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -2.02 Total: -84.37 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.58 Total: -37.95 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -67.07 2.81 -64.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331050630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.042 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds