Wall clock time and date at job start Mon Mar 30 2020 01:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00005 * 2 1 4 4 H 1.09000 * 109.46628 * 30.00625 * 3 2 1 5 5 C 1.52994 * 109.47217 * 270.00536 * 3 2 1 6 6 C 1.53002 * 109.47316 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46848 * 59.99627 * 6 5 3 8 8 C 1.53003 * 109.47352 * 300.00110 * 7 6 5 9 9 H 1.08999 * 109.46895 * 300.00360 * 8 7 6 10 10 C 1.52992 * 109.47222 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47257 * 65.00044 * 10 8 7 12 12 O 1.21279 * 120.00113 * 0.02562 * 11 10 8 13 13 N 1.34784 * 119.99961 * 180.02562 * 11 10 8 14 14 C 1.46493 * 119.99864 * 359.72839 * 13 11 10 15 15 C 1.46494 * 119.99635 * 180.02562 * 13 11 10 16 16 C 1.50694 * 109.47248 * 90.00174 * 15 13 11 17 17 H 1.07999 * 119.99904 * 359.97438 * 16 15 13 18 18 C 1.37883 * 120.00385 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99650 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47439 * 90.00453 * 20 18 16 22 22 H 1.48504 * 109.47008 * 210.00380 * 20 18 16 23 23 H 1.48496 * 109.47181 * 329.99866 * 20 18 16 24 24 C 1.53001 * 109.46907 * 60.00318 * 8 7 6 25 25 H 1.09000 * 109.46973 * 299.99637 * 1 2 3 26 26 H 1.08992 * 109.47474 * 59.99487 * 1 2 3 27 27 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47026 * 299.99845 * 5 3 2 29 29 H 1.08998 * 109.47737 * 59.99943 * 5 3 2 30 30 H 1.08999 * 109.47557 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.46758 * 300.00452 * 6 5 3 32 32 H 1.09005 * 109.47076 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.47415 * 60.00602 * 7 6 5 34 34 H 1.09004 * 109.47330 * 305.00067 * 10 8 7 35 35 H 1.08997 * 109.47279 * 185.00554 * 10 8 7 36 36 H 1.09000 * 109.47297 * 90.00011 * 14 13 11 37 37 H 1.09002 * 109.47192 * 209.99937 * 14 13 11 38 38 H 1.08996 * 109.47342 * 329.99648 * 14 13 11 39 39 H 1.09003 * 109.47006 * 210.00121 * 15 13 11 40 40 H 1.09004 * 109.47665 * 329.99813 * 15 13 11 41 41 H 0.96998 * 120.00151 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.47078 * 59.99362 * 24 8 7 43 43 H 1.08999 * 109.47230 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2175 1.7714 -1.4424 6 6 2.8404 3.1689 -1.4425 7 6 4.1892 3.1260 -0.7214 8 6 3.9819 2.6601 0.7211 9 1 3.3170 3.3542 1.2351 10 6 5.3305 2.6178 1.4423 11 6 5.8863 4.0144 1.5504 12 8 5.2647 4.9513 1.0960 13 7 7.0743 4.2222 2.1523 14 6 7.8223 3.0911 2.7066 15 6 7.6142 5.5799 2.2580 16 6 7.1387 6.2112 3.5410 17 1 6.4980 5.6567 4.2106 18 6 7.5216 7.4967 3.8602 19 7 8.3015 8.1722 3.0445 20 14 6.9328 8.2790 5.4509 21 1 7.9037 7.9861 6.5357 22 1 6.8227 9.7487 5.2687 23 1 5.6038 7.7243 5.8130 24 6 3.3590 1.2626 0.7210 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0277 0.0005 28 1 2.8828 1.0775 -1.9564 29 1 1.2567 1.8015 -1.9563 30 1 2.9886 3.5007 -2.4701 31 1 2.1756 3.8630 -0.9283 32 1 4.6329 4.1217 -0.7210 33 1 4.8541 2.4320 -1.2354 34 1 6.0242 1.9933 0.8793 35 1 5.1958 2.2020 2.4407 36 1 8.4862 2.6855 1.9432 37 1 8.4121 3.4283 3.5590 38 1 7.1253 2.3181 3.0301 39 1 8.7035 5.5389 2.2551 40 1 7.2708 6.1745 1.4114 41 1 8.5712 9.0764 3.2692 42 1 4.0239 0.5685 0.2069 43 1 3.2117 0.9304 1.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331060171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:25 Heat of formation + Delta-G solvation = -107.280136 kcal Electronic energy + Delta-G solvation = -21278.132240 eV Core-core repulsion = 18129.465066 eV Total energy + Delta-G solvation = -3148.667174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75328 -38.62480 -36.52238 -34.71975 -32.72499 -32.15036 -30.12303 -28.29029 -26.76868 -26.56076 -25.47723 -22.88560 -22.38292 -21.20444 -19.79064 -18.28047 -16.59051 -16.51342 -16.17260 -15.71028 -15.25678 -15.16434 -14.98407 -14.48365 -14.11090 -13.86427 -13.39759 -12.94288 -12.82678 -12.51828 -12.17961 -12.06491 -11.96662 -11.87953 -11.68303 -11.41802 -11.18765 -11.00312 -10.89834 -10.86435 -10.57410 -10.35901 -10.32133 -10.30248 -10.13766 -9.59199 -9.52011 -8.74515 -8.42565 -7.58712 -6.03162 -4.07853 3.30374 3.36854 3.40652 3.51037 3.55757 4.07272 4.45874 4.65545 4.71588 4.98517 5.07950 5.09699 5.15469 5.21006 5.26409 5.30979 5.39310 5.43992 5.50518 5.56928 5.59115 5.71303 5.76535 5.83364 5.88920 5.97416 5.98348 6.00164 6.20291 6.24830 6.27194 6.33939 6.60550 6.69039 7.08497 7.09992 7.47007 7.58399 7.93676 8.25484 8.47686 8.92469 9.15917 9.57352 11.04867 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.003802 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.964504 B = 7363.407621 C = 7475.452516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.089 3.911 4 H 0.060 0.940 5 C -0.138 4.138 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.067 4.067 9 H 0.079 0.921 10 C -0.135 4.135 11 C 0.504 3.496 12 O -0.540 6.540 13 N -0.605 5.605 14 C 0.084 3.916 15 C 0.245 3.755 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.109 4.109 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 -16.134 -6.118 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.176 4.176 6 C -0.152 4.152 7 C -0.159 4.159 8 C -0.086 4.086 9 H 0.097 0.903 10 C -0.175 4.175 11 C 0.290 3.710 12 O -0.418 6.418 13 N -0.337 5.337 14 C -0.060 4.060 15 C 0.126 3.874 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.147 4.147 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.178 -15.610 -6.377 19.696 hybrid contribution -0.399 0.633 0.995 1.245 sum -10.577 -14.977 -5.382 19.109 Atomic orbital electron populations 1.22750 0.81522 1.02380 0.99885 1.87892 1.19292 1.28425 1.95112 1.22172 0.95032 0.83880 0.95709 0.92166 1.22038 1.00938 0.97815 0.96825 1.21464 0.97408 0.95678 1.00657 1.21749 0.96639 1.03513 0.94028 1.20826 0.95589 0.95383 0.96757 0.90266 1.21733 0.97626 0.96187 1.01973 1.20348 0.81387 0.90472 0.78744 1.90620 1.58306 1.44485 1.48369 1.48183 1.19931 1.09868 1.55745 1.21623 0.96370 0.89260 0.98790 1.19261 0.93789 0.76423 0.97968 1.21447 1.30566 0.99244 1.05165 0.92528 1.24943 0.95101 0.96887 0.97240 1.69934 1.35389 1.11610 1.36520 0.86499 0.79142 0.78511 0.83288 1.20653 1.21086 1.19917 1.21649 0.94950 0.97613 1.00492 0.94131 0.94235 0.89924 0.91306 0.92405 0.91873 0.91888 0.89120 0.92706 0.89680 0.89548 0.93838 0.90911 0.92433 0.95170 0.93858 0.92742 0.91163 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.39 -4.50 10.35 -35.23 -0.36 -4.87 16 3 C 0.09 1.01 2.61 -26.73 -0.07 0.94 16 4 H 0.06 0.67 7.79 -51.93 -0.40 0.27 16 5 C -0.14 -1.49 5.54 -26.73 -0.15 -1.64 16 6 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 7 C -0.12 -1.70 4.95 -26.73 -0.13 -1.83 16 8 C -0.07 -0.92 1.84 -90.62 -0.17 -1.08 16 9 H 0.08 1.24 7.95 -51.93 -0.41 0.82 16 10 C -0.13 -1.96 3.73 -27.89 -0.10 -2.06 16 11 C 0.50 10.27 7.39 -10.98 -0.08 10.19 16 12 O -0.54 -13.12 13.54 5.56 0.08 -13.04 16 13 N -0.61 -12.86 2.86 -182.96 -0.52 -13.39 16 14 C 0.08 1.33 10.24 59.84 0.61 1.94 16 15 C 0.24 6.46 5.16 -5.20 -0.03 6.44 16 16 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.11 -1.27 4.85 -26.73 -0.13 -1.40 16 25 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 26 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.57 5.95 -51.93 -0.31 1.26 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 35 H 0.09 1.12 7.39 -51.93 -0.38 0.74 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 39 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 40 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -32.68 341.07 -7.34 -40.02 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.65 Total: -2.36 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.27 Total: -2.40 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.21 Total: -39.47 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.29 Total: -17.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.68 -7.34 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331060171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.256 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds