Wall clock time and date at job start Mon Mar 30 2020 01:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00005 * 2 1 4 4 H 1.09000 * 109.46628 * 30.00625 * 3 2 1 5 5 C 1.52994 * 109.47217 * 270.00536 * 3 2 1 6 6 C 1.53002 * 109.47316 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46848 * 59.99627 * 6 5 3 8 8 C 1.53003 * 109.47352 * 300.00110 * 7 6 5 9 9 H 1.08999 * 109.46895 * 300.00360 * 8 7 6 10 10 C 1.52992 * 109.47222 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47257 * 65.00044 * 10 8 7 12 12 O 1.21279 * 120.00113 * 0.02562 * 11 10 8 13 13 N 1.34784 * 119.99961 * 180.02562 * 11 10 8 14 14 C 1.46493 * 119.99864 * 359.72839 * 13 11 10 15 15 C 1.46494 * 119.99635 * 180.02562 * 13 11 10 16 16 C 1.50694 * 109.47248 * 90.00174 * 15 13 11 17 17 H 1.07999 * 119.99904 * 359.97438 * 16 15 13 18 18 C 1.37883 * 120.00385 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99650 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47439 * 90.00453 * 20 18 16 22 22 H 1.48504 * 109.47008 * 210.00380 * 20 18 16 23 23 H 1.48496 * 109.47181 * 329.99866 * 20 18 16 24 24 C 1.53001 * 109.46907 * 60.00318 * 8 7 6 25 25 H 1.09000 * 109.46973 * 299.99637 * 1 2 3 26 26 H 1.08992 * 109.47474 * 59.99487 * 1 2 3 27 27 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47026 * 299.99845 * 5 3 2 29 29 H 1.08998 * 109.47737 * 59.99943 * 5 3 2 30 30 H 1.08999 * 109.47557 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.46758 * 300.00452 * 6 5 3 32 32 H 1.09005 * 109.47076 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.47415 * 60.00602 * 7 6 5 34 34 H 1.09004 * 109.47330 * 305.00067 * 10 8 7 35 35 H 1.08997 * 109.47279 * 185.00554 * 10 8 7 36 36 H 1.09000 * 109.47297 * 90.00011 * 14 13 11 37 37 H 1.09002 * 109.47192 * 209.99937 * 14 13 11 38 38 H 1.08996 * 109.47342 * 329.99648 * 14 13 11 39 39 H 1.09003 * 109.47006 * 210.00121 * 15 13 11 40 40 H 1.09004 * 109.47665 * 329.99813 * 15 13 11 41 41 H 0.96998 * 120.00151 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.47078 * 59.99362 * 24 8 7 43 43 H 1.08999 * 109.47230 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2175 1.7714 -1.4424 6 6 2.8404 3.1689 -1.4425 7 6 4.1892 3.1260 -0.7214 8 6 3.9819 2.6601 0.7211 9 1 3.3170 3.3542 1.2351 10 6 5.3305 2.6178 1.4423 11 6 5.8863 4.0144 1.5504 12 8 5.2647 4.9513 1.0960 13 7 7.0743 4.2222 2.1523 14 6 7.8223 3.0911 2.7066 15 6 7.6142 5.5799 2.2580 16 6 7.1387 6.2112 3.5410 17 1 6.4980 5.6567 4.2106 18 6 7.5216 7.4967 3.8602 19 7 8.3015 8.1722 3.0445 20 14 6.9328 8.2790 5.4509 21 1 7.9037 7.9861 6.5357 22 1 6.8227 9.7487 5.2687 23 1 5.6038 7.7243 5.8130 24 6 3.3590 1.2626 0.7210 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0277 0.0005 28 1 2.8828 1.0775 -1.9564 29 1 1.2567 1.8015 -1.9563 30 1 2.9886 3.5007 -2.4701 31 1 2.1756 3.8630 -0.9283 32 1 4.6329 4.1217 -0.7210 33 1 4.8541 2.4320 -1.2354 34 1 6.0242 1.9933 0.8793 35 1 5.1958 2.2020 2.4407 36 1 8.4862 2.6855 1.9432 37 1 8.4121 3.4283 3.5590 38 1 7.1253 2.3181 3.0301 39 1 8.7035 5.5389 2.2551 40 1 7.2708 6.1745 1.4114 41 1 8.5712 9.0764 3.2692 42 1 4.0239 0.5685 0.2069 43 1 3.2117 0.9304 1.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331060171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:25 Heat of formation + Delta-G solvation = -127.948444 kcal Electronic energy + Delta-G solvation = -21279.028486 eV Core-core repulsion = 18129.465066 eV Total energy + Delta-G solvation = -3149.563419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03507 -39.83713 -37.54589 -36.44471 -34.74686 -33.36595 -31.07119 -30.07913 -28.08267 -27.28017 -27.08611 -24.74472 -23.34206 -22.36230 -20.80974 -19.83419 -18.68834 -17.75976 -17.39456 -17.01738 -16.54499 -16.43532 -16.14999 -15.98143 -15.40873 -15.02519 -14.49536 -14.27990 -14.11545 -13.84395 -13.74659 -13.42697 -13.24210 -13.11461 -12.91692 -12.84770 -12.62800 -12.52593 -12.39193 -12.19818 -11.92752 -11.89990 -11.71166 -11.43233 -11.33579 -11.25907 -10.64756 -10.41241 -10.33300 -9.35470 -8.22615 -6.37918 1.35579 1.38655 1.49033 1.92651 2.33272 2.47669 2.84666 3.06380 3.68159 3.77412 3.82828 4.11459 4.12003 4.24667 4.33028 4.43402 4.51385 4.52887 4.56044 4.58392 4.68387 4.71215 4.72864 4.79519 4.84705 4.89526 4.98941 5.01149 5.08217 5.09322 5.22195 5.26442 5.27955 5.35323 5.49774 5.57696 5.59294 5.87502 6.06863 6.30758 6.70567 6.85650 7.28931 7.56684 8.84207 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.003802 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.964504 B = 7363.407621 C = 7475.452516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.088 3.912 4 H 0.057 0.943 5 C -0.131 4.131 6 C -0.111 4.111 7 C -0.121 4.121 8 C -0.062 4.062 9 H 0.053 0.947 10 C -0.121 4.121 11 C 0.492 3.508 12 O -0.590 6.590 13 N -0.615 5.615 14 C 0.078 3.922 15 C 0.259 3.741 16 C -0.543 4.543 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.273 1.273 24 C -0.100 4.100 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.020 0.980 40 H -0.004 1.004 41 H 0.267 0.733 42 H 0.081 0.919 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 -18.586 -5.252 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.031 3.969 4 H 0.075 0.925 5 C -0.168 4.168 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.081 4.081 9 H 0.072 0.928 10 C -0.160 4.160 11 C 0.282 3.718 12 O -0.472 6.472 13 N -0.347 5.347 14 C -0.064 4.064 15 C 0.138 3.862 16 C -0.581 4.581 17 H 0.071 0.929 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.198 1.198 24 C -0.138 4.138 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.038 0.962 40 H 0.015 0.985 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.981 -18.114 -5.501 21.885 hybrid contribution -0.151 1.393 0.667 1.551 sum -11.131 -16.722 -4.835 20.661 Atomic orbital electron populations 1.22947 0.80052 1.03703 1.00488 1.87858 1.20939 1.28175 1.95210 1.22134 0.94935 0.84050 0.95793 0.92474 1.21960 1.01448 0.96550 0.96873 1.21418 0.96241 0.96647 1.00593 1.21678 0.97754 1.01449 0.94935 1.20755 0.94936 0.96438 0.96020 0.92834 1.21747 0.98121 0.92120 1.04047 1.21466 0.80541 0.92546 0.77282 1.90601 1.59586 1.46797 1.50198 1.48237 1.20862 1.09220 1.56374 1.21919 0.97205 0.88118 0.99137 1.18706 0.92970 0.79131 0.95425 1.21724 1.30652 0.99923 1.05829 0.92920 1.25889 0.95063 0.97423 1.00931 1.70056 1.36365 1.12063 1.38465 0.85398 0.78811 0.77398 0.79095 1.18737 1.20614 1.19767 1.21537 0.95178 0.95755 1.01324 0.93704 0.93494 0.88305 0.90890 0.91243 0.91216 0.92987 0.93255 0.91274 0.86575 0.87022 0.91232 0.91876 0.88626 0.96200 0.98539 0.92408 0.90018 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -8.28 10.35 -148.98 -1.54 -9.82 16 3 C 0.09 1.81 2.61 30.59 0.08 1.89 16 4 H 0.06 1.20 7.79 -2.39 -0.02 1.18 16 5 C -0.13 -2.56 5.54 30.59 0.17 -2.40 16 6 C -0.11 -2.62 5.92 30.60 0.18 -2.43 16 7 C -0.12 -3.35 4.95 30.60 0.15 -3.20 16 8 C -0.06 -1.65 1.84 -10.79 -0.02 -1.67 16 9 H 0.05 1.69 7.95 -2.39 -0.02 1.67 16 10 C -0.12 -3.24 3.73 29.85 0.11 -3.13 16 11 C 0.49 20.24 7.39 87.66 0.65 20.89 16 12 O -0.59 -30.20 13.54 -3.03 -0.04 -30.24 16 13 N -0.62 -26.32 2.86 -851.16 -2.43 -28.75 16 14 C 0.08 2.33 10.24 127.77 1.31 3.64 16 15 C 0.26 14.28 5.16 85.63 0.44 14.72 16 16 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 17 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 18 C 0.01 0.33 5.46 84.66 0.46 0.80 16 19 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 20 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 24 C -0.10 -2.06 4.85 30.60 0.15 -1.91 16 25 H 0.04 0.61 8.08 -2.39 -0.02 0.59 16 26 H 0.05 0.61 7.87 -2.39 -0.02 0.59 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.80 5.95 -2.38 -0.01 1.78 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.12 2.45 8.11 -2.38 -0.02 2.43 16 35 H 0.11 2.48 7.39 -2.39 -0.02 2.47 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 38 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16 39 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 40 H 0.00 -0.22 7.42 -2.38 -0.02 -0.24 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -74.31 341.07 4.40 -69.91 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.95 Total: 11.08 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.15 Total: -2.81 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.15 Total: -85.56 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.58 Total: -40.06 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -74.31 4.40 -69.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331060171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.042 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds