Wall clock time and date at job start Mon Mar 30 2020 01:42:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42900 * 114.00005 * 2 1
4 4 H 1.09000 * 109.46628 * 30.00625 * 3 2 1
5 5 C 1.52994 * 109.47217 * 270.00536 * 3 2 1
6 6 C 1.53002 * 109.47316 * 180.02562 * 5 3 2
7 7 C 1.53004 * 109.46848 * 59.99627 * 6 5 3
8 8 C 1.53003 * 109.47352 * 300.00110 * 7 6 5
9 9 H 1.08999 * 109.46895 * 300.00360 * 8 7 6
10 10 C 1.52992 * 109.47222 * 180.02562 * 8 7 6
11 11 C 1.50700 * 109.47257 * 65.00044 * 10 8 7
12 12 O 1.21279 * 120.00113 * 0.02562 * 11 10 8
13 13 N 1.34784 * 119.99961 * 180.02562 * 11 10 8
14 14 C 1.46493 * 119.99864 * 359.72839 * 13 11 10
15 15 C 1.46494 * 119.99635 * 180.02562 * 13 11 10
16 16 C 1.50694 * 109.47248 * 90.00174 * 15 13 11
17 17 H 1.07999 * 119.99904 * 359.97438 * 16 15 13
18 18 C 1.37883 * 120.00385 * 179.97438 * 16 15 13
19 19 N 1.31514 * 119.99650 * 0.02562 * 18 16 15
20 20 Si 1.86794 * 120.00268 * 180.02562 * 18 16 15
21 21 H 1.48500 * 109.47439 * 90.00453 * 20 18 16
22 22 H 1.48504 * 109.47008 * 210.00380 * 20 18 16
23 23 H 1.48496 * 109.47181 * 329.99866 * 20 18 16
24 24 C 1.53001 * 109.46907 * 60.00318 * 8 7 6
25 25 H 1.09000 * 109.46973 * 299.99637 * 1 2 3
26 26 H 1.08992 * 109.47474 * 59.99487 * 1 2 3
27 27 H 1.09001 * 109.47269 * 180.02562 * 1 2 3
28 28 H 1.09006 * 109.47026 * 299.99845 * 5 3 2
29 29 H 1.08998 * 109.47737 * 59.99943 * 5 3 2
30 30 H 1.08999 * 109.47557 * 179.97438 * 6 5 3
31 31 H 1.08998 * 109.46758 * 300.00452 * 6 5 3
32 32 H 1.09005 * 109.47076 * 180.02562 * 7 6 5
33 33 H 1.08993 * 109.47415 * 60.00602 * 7 6 5
34 34 H 1.09004 * 109.47330 * 305.00067 * 10 8 7
35 35 H 1.08997 * 109.47279 * 185.00554 * 10 8 7
36 36 H 1.09000 * 109.47297 * 90.00011 * 14 13 11
37 37 H 1.09002 * 109.47192 * 209.99937 * 14 13 11
38 38 H 1.08996 * 109.47342 * 329.99648 * 14 13 11
39 39 H 1.09003 * 109.47006 * 210.00121 * 15 13 11
40 40 H 1.09004 * 109.47665 * 329.99813 * 15 13 11
41 41 H 0.96998 * 120.00151 * 180.02562 * 19 18 16
42 42 H 1.08998 * 109.47078 * 59.99362 * 24 8 7
43 43 H 1.08999 * 109.47230 * 179.97438 * 24 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3450 1.9993 0.5139
5 6 2.2175 1.7714 -1.4424
6 6 2.8404 3.1689 -1.4425
7 6 4.1892 3.1260 -0.7214
8 6 3.9819 2.6601 0.7211
9 1 3.3170 3.3542 1.2351
10 6 5.3305 2.6178 1.4423
11 6 5.8863 4.0144 1.5504
12 8 5.2647 4.9513 1.0960
13 7 7.0743 4.2222 2.1523
14 6 7.8223 3.0911 2.7066
15 6 7.6142 5.5799 2.2580
16 6 7.1387 6.2112 3.5410
17 1 6.4980 5.6567 4.2106
18 6 7.5216 7.4967 3.8602
19 7 8.3015 8.1722 3.0445
20 14 6.9328 8.2790 5.4509
21 1 7.9037 7.9861 6.5357
22 1 6.8227 9.7487 5.2687
23 1 5.6038 7.7243 5.8130
24 6 3.3590 1.2626 0.7210
25 1 -0.3633 0.5138 0.8900
26 1 -0.3634 0.5139 -0.8898
27 1 -0.3634 -1.0277 0.0005
28 1 2.8828 1.0775 -1.9564
29 1 1.2567 1.8015 -1.9563
30 1 2.9886 3.5007 -2.4701
31 1 2.1756 3.8630 -0.9283
32 1 4.6329 4.1217 -0.7210
33 1 4.8541 2.4320 -1.2354
34 1 6.0242 1.9933 0.8793
35 1 5.1958 2.2020 2.4407
36 1 8.4862 2.6855 1.9432
37 1 8.4121 3.4283 3.5590
38 1 7.1253 2.3181 3.0301
39 1 8.7035 5.5389 2.2551
40 1 7.2708 6.1745 1.4114
41 1 8.5712 9.0764 3.2692
42 1 4.0239 0.5685 0.2069
43 1 3.2117 0.9304 1.7487
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331060171.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:42:25
Heat of formation + Delta-G solvation = -127.948444 kcal
Electronic energy + Delta-G solvation = -21279.028486 eV
Core-core repulsion = 18129.465066 eV
Total energy + Delta-G solvation = -3149.563419 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.03507 -39.83713 -37.54589 -36.44471 -34.74686 -33.36595 -31.07119 -30.07913
-28.08267 -27.28017 -27.08611 -24.74472 -23.34206 -22.36230 -20.80974 -19.83419
-18.68834 -17.75976 -17.39456 -17.01738 -16.54499 -16.43532 -16.14999 -15.98143
-15.40873 -15.02519 -14.49536 -14.27990 -14.11545 -13.84395 -13.74659 -13.42697
-13.24210 -13.11461 -12.91692 -12.84770 -12.62800 -12.52593 -12.39193 -12.19818
-11.92752 -11.89990 -11.71166 -11.43233 -11.33579 -11.25907 -10.64756 -10.41241
-10.33300 -9.35470 -8.22615 -6.37918 1.35579 1.38655 1.49033 1.92651
2.33272 2.47669 2.84666 3.06380 3.68159 3.77412 3.82828 4.11459
4.12003 4.24667 4.33028 4.43402 4.51385 4.52887 4.56044 4.58392
4.68387 4.71215 4.72864 4.79519 4.84705 4.89526 4.98941 5.01149
5.08217 5.09322 5.22195 5.26442 5.27955 5.35323 5.49774 5.57696
5.59294 5.87502 6.06863 6.30758 6.70567 6.85650 7.28931 7.56684
8.84207
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.028249 B = 0.003802 C = 0.003745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 990.964504 B = 7363.407621 C = 7475.452516
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.402 6.402
3 C 0.088 3.912
4 H 0.057 0.943
5 C -0.131 4.131
6 C -0.111 4.111
7 C -0.121 4.121
8 C -0.062 4.062
9 H 0.053 0.947
10 C -0.121 4.121
11 C 0.492 3.508
12 O -0.590 6.590
13 N -0.615 5.615
14 C 0.078 3.922
15 C 0.259 3.741
16 C -0.543 4.543
17 H 0.053 0.947
18 C 0.006 3.994
19 N -0.930 5.930
20 Si 0.969 3.031
21 H -0.262 1.262
22 H -0.281 1.281
23 H -0.273 1.273
24 C -0.100 4.100
25 H 0.044 0.956
26 H 0.046 0.954
27 H 0.099 0.901
28 H 0.072 0.928
29 H 0.069 0.931
30 H 0.069 0.931
31 H 0.051 0.949
32 H 0.049 0.951
33 H 0.069 0.931
34 H 0.116 0.884
35 H 0.112 0.888
36 H 0.069 0.931
37 H 0.062 0.938
38 H 0.095 0.905
39 H 0.020 0.980
40 H -0.004 1.004
41 H 0.267 0.733
42 H 0.081 0.919
43 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.895 -18.586 -5.252 22.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.322 6.322
3 C 0.031 3.969
4 H 0.075 0.925
5 C -0.168 4.168
6 C -0.149 4.149
7 C -0.158 4.158
8 C -0.081 4.081
9 H 0.072 0.928
10 C -0.160 4.160
11 C 0.282 3.718
12 O -0.472 6.472
13 N -0.347 5.347
14 C -0.064 4.064
15 C 0.138 3.862
16 C -0.581 4.581
17 H 0.071 0.929
18 C -0.193 4.193
19 N -0.569 5.569
20 Si 0.793 3.207
21 H -0.187 1.187
22 H -0.206 1.206
23 H -0.198 1.198
24 C -0.138 4.138
25 H 0.063 0.937
26 H 0.065 0.935
27 H 0.117 0.883
28 H 0.091 0.909
29 H 0.088 0.912
30 H 0.088 0.912
31 H 0.070 0.930
32 H 0.067 0.933
33 H 0.087 0.913
34 H 0.134 0.866
35 H 0.130 0.870
36 H 0.088 0.912
37 H 0.081 0.919
38 H 0.114 0.886
39 H 0.038 0.962
40 H 0.015 0.985
41 H 0.076 0.924
42 H 0.100 0.900
43 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -10.981 -18.114 -5.501 21.885
hybrid contribution -0.151 1.393 0.667 1.551
sum -11.131 -16.722 -4.835 20.661
Atomic orbital electron populations
1.22947 0.80052 1.03703 1.00488 1.87858 1.20939 1.28175 1.95210
1.22134 0.94935 0.84050 0.95793 0.92474 1.21960 1.01448 0.96550
0.96873 1.21418 0.96241 0.96647 1.00593 1.21678 0.97754 1.01449
0.94935 1.20755 0.94936 0.96438 0.96020 0.92834 1.21747 0.98121
0.92120 1.04047 1.21466 0.80541 0.92546 0.77282 1.90601 1.59586
1.46797 1.50198 1.48237 1.20862 1.09220 1.56374 1.21919 0.97205
0.88118 0.99137 1.18706 0.92970 0.79131 0.95425 1.21724 1.30652
0.99923 1.05829 0.92920 1.25889 0.95063 0.97423 1.00931 1.70056
1.36365 1.12063 1.38465 0.85398 0.78811 0.77398 0.79095 1.18737
1.20614 1.19767 1.21537 0.95178 0.95755 1.01324 0.93704 0.93494
0.88305 0.90890 0.91243 0.91216 0.92987 0.93255 0.91274 0.86575
0.87022 0.91232 0.91876 0.88626 0.96200 0.98539 0.92408 0.90018
0.90577
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.35 10.82 113.37 1.23 1.58 16
2 O -0.40 -8.28 10.35 -148.98 -1.54 -9.82 16
3 C 0.09 1.81 2.61 30.59 0.08 1.89 16
4 H 0.06 1.20 7.79 -2.39 -0.02 1.18 16
5 C -0.13 -2.56 5.54 30.59 0.17 -2.40 16
6 C -0.11 -2.62 5.92 30.60 0.18 -2.43 16
7 C -0.12 -3.35 4.95 30.60 0.15 -3.20 16
8 C -0.06 -1.65 1.84 -10.79 -0.02 -1.67 16
9 H 0.05 1.69 7.95 -2.39 -0.02 1.67 16
10 C -0.12 -3.24 3.73 29.85 0.11 -3.13 16
11 C 0.49 20.24 7.39 87.66 0.65 20.89 16
12 O -0.59 -30.20 13.54 -3.03 -0.04 -30.24 16
13 N -0.62 -26.32 2.86 -851.16 -2.43 -28.75 16
14 C 0.08 2.33 10.24 127.77 1.31 3.64 16
15 C 0.26 14.28 5.16 85.63 0.44 14.72 16
16 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16
17 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16
18 C 0.01 0.33 5.46 84.66 0.46 0.80 16
19 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16
20 Si 0.97 45.42 29.54 68.60 2.03 47.44 16
21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16
22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16
24 C -0.10 -2.06 4.85 30.60 0.15 -1.91 16
25 H 0.04 0.61 8.08 -2.39 -0.02 0.59 16
26 H 0.05 0.61 7.87 -2.39 -0.02 0.59 16
27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16
28 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16
29 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16
30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16
32 H 0.05 1.80 5.95 -2.38 -0.01 1.78 16
33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
34 H 0.12 2.45 8.11 -2.38 -0.02 2.43 16
35 H 0.11 2.48 7.39 -2.39 -0.02 2.47 16
36 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16
37 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16
38 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16
39 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16
40 H 0.00 -0.22 7.42 -2.38 -0.02 -0.24 16
41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16
42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
Total: -1.00 -74.31 341.07 4.40 -69.91
By element:
Atomic # 1 Polarization: 10.13 SS G_CDS: 0.95 Total: 11.08 kcal
Atomic # 6 Polarization: -7.96 SS G_CDS: 5.15 Total: -2.81 kcal
Atomic # 7 Polarization: -83.42 SS G_CDS: -2.15 Total: -85.56 kcal
Atomic # 8 Polarization: -38.47 SS G_CDS: -1.58 Total: -40.06 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal
Total: -74.31 4.40 -69.91 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331060171.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.042 kcal
(2) G-P(sol) polarization free energy of solvation -74.307 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds