Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00064 * 2 1 4 4 H 1.08999 * 109.46875 * 329.99618 * 3 2 1 5 5 C 1.52995 * 109.47111 * 90.00134 * 3 2 1 6 6 C 1.53000 * 109.47550 * 60.00050 * 5 3 2 7 7 C 1.52998 * 109.46923 * 59.99693 * 6 5 3 8 8 C 1.52998 * 109.47311 * 300.00117 * 7 6 5 9 9 H 1.09000 * 109.47404 * 299.99794 * 8 7 6 10 10 C 1.52998 * 109.47311 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47219 * 65.00281 * 10 8 7 12 12 O 1.21287 * 119.99553 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00320 * 180.02562 * 11 10 8 14 14 C 1.46497 * 119.99637 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99751 * 180.02562 * 13 11 10 16 16 C 1.50701 * 109.47260 * 89.99944 * 15 13 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 13 18 18 C 1.37871 * 119.99694 * 180.27562 * 16 15 13 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47266 * 60.00049 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99456 * 20 18 16 24 24 C 1.52998 * 109.47017 * 210.00229 * 3 2 1 25 25 H 1.08998 * 109.46957 * 60.00047 * 1 2 3 26 26 H 1.09003 * 109.47138 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47125 * 299.99815 * 1 2 3 28 28 H 1.08998 * 109.47053 * 299.99925 * 5 3 2 29 29 H 1.09000 * 109.47129 * 180.02562 * 5 3 2 30 30 H 1.09008 * 109.46603 * 300.00026 * 6 5 3 31 31 H 1.08991 * 109.47301 * 180.02562 * 6 5 3 32 32 H 1.09006 * 109.46804 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.47443 * 60.00311 * 7 6 5 34 34 H 1.09003 * 109.47453 * 305.00337 * 10 8 7 35 35 H 1.09001 * 109.47698 * 185.00026 * 10 8 7 36 36 H 1.09005 * 109.46868 * 270.00219 * 14 13 11 37 37 H 1.08999 * 109.47518 * 29.99982 * 14 13 11 38 38 H 1.08995 * 109.46848 * 150.00638 * 14 13 11 39 39 H 1.09000 * 109.47197 * 329.98950 * 15 13 11 40 40 H 1.09007 * 109.46342 * 209.99522 * 15 13 11 41 41 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.47496 * 180.02562 * 24 3 2 43 43 H 1.08995 * 109.47465 * 59.99251 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7713 1.4424 6 6 3.1516 0.7974 2.1638 7 6 4.5002 0.7551 1.4425 8 6 4.2927 0.2892 0.0000 9 1 3.8494 -0.7066 0.0000 10 6 5.6414 0.2463 -0.7211 11 6 6.5178 -0.8022 -0.0856 12 8 6.1044 -1.4509 0.8521 13 7 7.7612 -1.0183 -0.5586 14 6 8.2606 -0.2342 -1.6909 15 6 8.6128 -2.0380 0.0588 16 6 8.3932 -3.3602 -0.6300 17 1 7.6894 -3.4337 -1.4458 18 6 9.0863 -4.4773 -0.2146 19 7 9.9431 -4.3879 0.7791 20 14 8.8083 -6.1180 -1.0633 21 1 9.1542 -5.9959 -2.5023 22 1 9.6681 -7.1526 -0.4342 23 1 7.3824 -6.5099 -0.9283 24 6 3.3589 1.2632 -0.7213 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2569 1.8014 1.9563 29 1 2.6607 2.7673 1.4425 30 1 2.7081 -0.1984 2.1637 31 1 3.2990 1.1290 3.1915 32 1 5.1653 0.0609 1.9561 33 1 4.9436 1.7508 1.4424 34 1 6.1257 1.2198 -0.6442 35 1 5.4844 0.0006 -1.7714 36 1 8.0145 -0.7440 -2.6225 37 1 7.7966 0.7520 -1.6828 38 1 9.3423 -0.1276 -1.6099 39 1 8.3597 -2.1318 1.1149 40 1 9.6584 -1.7462 -0.0397 41 1 10.4304 -5.1739 1.0716 42 1 3.8025 2.2589 -0.7209 43 1 3.2112 0.9312 -1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331060172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = -103.923153 kcal Electronic energy + Delta-G solvation = -21522.797531 eV Core-core repulsion = 18374.275927 eV Total energy + Delta-G solvation = -3148.521604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75997 -38.58932 -36.12339 -34.64321 -32.66228 -32.05899 -30.18331 -28.24694 -26.78842 -26.48617 -25.41721 -22.85143 -22.43449 -21.14646 -19.51151 -18.21174 -16.47619 -16.43636 -15.98487 -15.75313 -15.39025 -15.09281 -14.80966 -14.48475 -14.08642 -13.61549 -13.31531 -12.80262 -12.57476 -12.42657 -12.24523 -12.05351 -11.96061 -11.86255 -11.67894 -11.33412 -11.20953 -11.14468 -10.84140 -10.77172 -10.52301 -10.33282 -10.10640 -10.08287 -9.97711 -9.55848 -9.44745 -8.65683 -8.37670 -7.53129 -5.98661 -4.03041 3.35864 3.39887 3.43060 3.58143 3.74536 4.08009 4.49879 4.71033 4.76306 4.89083 5.14381 5.20010 5.22650 5.25709 5.33227 5.35727 5.51969 5.53115 5.55080 5.62596 5.64291 5.72401 5.85285 5.86911 5.91125 5.98115 6.03995 6.05954 6.24975 6.32613 6.44188 6.47715 6.77271 6.84802 7.13899 7.19576 7.51234 7.64173 7.98256 8.30430 8.53247 8.97245 9.23019 9.62030 11.09374 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.004280 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.144842 B = 6540.585652 C = 6927.387518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.090 3.910 4 H 0.055 0.945 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.065 4.065 9 H 0.087 0.913 10 C -0.136 4.136 11 C 0.504 3.496 12 O -0.537 6.537 13 N -0.607 5.607 14 C 0.087 3.913 15 C 0.246 3.754 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.111 4.111 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.353 15.340 -3.353 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.033 3.967 4 H 0.073 0.927 5 C -0.178 4.178 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.084 4.084 9 H 0.105 0.895 10 C -0.177 4.177 11 C 0.290 3.710 12 O -0.415 6.415 13 N -0.339 5.339 14 C -0.057 4.057 15 C 0.126 3.874 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.148 4.148 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.294 14.712 -2.743 20.695 hybrid contribution -0.241 -0.672 -0.617 0.944 sum -14.535 14.040 -3.360 20.486 Atomic orbital electron populations 1.22753 0.81913 1.02557 0.99393 1.88019 1.18777 1.27567 1.94938 1.22110 0.94681 0.84493 0.95453 0.92689 1.22032 0.99932 0.99574 0.96217 1.21383 0.95629 0.99868 0.97966 1.21697 0.97289 1.00918 0.95663 1.20789 0.92894 1.00380 0.94325 0.89470 1.21782 0.96168 0.98922 1.00795 1.20367 0.82111 0.84329 0.84146 1.90629 1.72466 1.49554 1.28844 1.48181 1.15004 1.38128 1.32612 1.21593 0.99983 0.94289 0.89879 1.19264 0.88569 0.84798 0.94748 1.21413 1.23707 0.93742 1.17465 0.92604 1.24928 0.95099 0.98988 0.95090 1.69922 1.26485 1.30130 1.27031 0.86571 0.78272 0.83179 0.79469 1.20294 1.21193 1.20176 1.21713 0.93813 1.00144 0.99150 0.94454 0.89830 0.94423 0.92465 0.91401 0.91223 0.92665 0.89407 0.93298 0.89997 0.89793 0.93402 0.92629 0.91607 0.93903 0.95234 0.92731 0.90940 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.37 -4.80 9.00 -35.23 -0.32 -5.12 16 3 C 0.09 0.98 2.92 -26.73 -0.08 0.91 16 4 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 5 C -0.14 -1.48 5.63 -26.73 -0.15 -1.63 16 6 C -0.11 -1.45 5.78 -26.73 -0.15 -1.61 16 7 C -0.12 -1.75 4.95 -26.73 -0.13 -1.88 16 8 C -0.07 -0.96 1.69 -90.62 -0.15 -1.11 16 9 H 0.09 1.57 7.49 -51.93 -0.39 1.19 16 10 C -0.14 -2.06 3.73 -27.88 -0.10 -2.17 16 11 C 0.50 10.65 7.39 -10.98 -0.08 10.57 16 12 O -0.54 -13.60 13.54 5.55 0.08 -13.52 16 13 N -0.61 -13.23 2.86 -182.95 -0.52 -13.75 16 14 C 0.09 1.41 10.29 59.85 0.62 2.03 16 15 C 0.25 6.61 5.20 -5.19 -0.03 6.58 16 16 C -0.52 -15.31 9.39 -34.44 -0.32 -15.64 16 17 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 20 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 C -0.11 -1.25 4.95 -26.73 -0.13 -1.38 16 25 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 28 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.04 7.68 -51.92 -0.40 0.64 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.62 5.95 -51.93 -0.31 1.31 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.04 7.40 -51.93 -0.38 0.65 16 35 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 38 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 39 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 40 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -33.73 338.73 -7.26 -40.99 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.59 Total: -2.31 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 0.28 Total: -2.28 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.21 Total: -40.22 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.24 Total: -18.64 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.73 -7.26 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331060172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.938 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds