Wall clock time and date at job start Mon Mar 30 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00064 * 2 1 4 4 H 1.08999 * 109.46875 * 329.99618 * 3 2 1 5 5 C 1.52995 * 109.47111 * 90.00134 * 3 2 1 6 6 C 1.53000 * 109.47550 * 60.00050 * 5 3 2 7 7 C 1.52998 * 109.46923 * 59.99693 * 6 5 3 8 8 C 1.52998 * 109.47311 * 300.00117 * 7 6 5 9 9 H 1.09000 * 109.47404 * 299.99794 * 8 7 6 10 10 C 1.52998 * 109.47311 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47219 * 65.00281 * 10 8 7 12 12 O 1.21287 * 119.99553 * 359.97438 * 11 10 8 13 13 N 1.34779 * 120.00320 * 180.02562 * 11 10 8 14 14 C 1.46497 * 119.99637 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99751 * 180.02562 * 13 11 10 16 16 C 1.50701 * 109.47260 * 89.99944 * 15 13 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 13 18 18 C 1.37871 * 119.99694 * 180.27562 * 16 15 13 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47266 * 60.00049 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99456 * 20 18 16 24 24 C 1.52998 * 109.47017 * 210.00229 * 3 2 1 25 25 H 1.08998 * 109.46957 * 60.00047 * 1 2 3 26 26 H 1.09003 * 109.47138 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47125 * 299.99815 * 1 2 3 28 28 H 1.08998 * 109.47053 * 299.99925 * 5 3 2 29 29 H 1.09000 * 109.47129 * 180.02562 * 5 3 2 30 30 H 1.09008 * 109.46603 * 300.00026 * 6 5 3 31 31 H 1.08991 * 109.47301 * 180.02562 * 6 5 3 32 32 H 1.09006 * 109.46804 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.47443 * 60.00311 * 7 6 5 34 34 H 1.09003 * 109.47453 * 305.00337 * 10 8 7 35 35 H 1.09001 * 109.47698 * 185.00026 * 10 8 7 36 36 H 1.09005 * 109.46868 * 270.00219 * 14 13 11 37 37 H 1.08999 * 109.47518 * 29.99982 * 14 13 11 38 38 H 1.08995 * 109.46848 * 150.00638 * 14 13 11 39 39 H 1.09000 * 109.47197 * 329.98950 * 15 13 11 40 40 H 1.09007 * 109.46342 * 209.99522 * 15 13 11 41 41 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.47496 * 180.02562 * 24 3 2 43 43 H 1.08995 * 109.47465 * 59.99251 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7713 1.4424 6 6 3.1516 0.7974 2.1638 7 6 4.5002 0.7551 1.4425 8 6 4.2927 0.2892 0.0000 9 1 3.8494 -0.7066 0.0000 10 6 5.6414 0.2463 -0.7211 11 6 6.5178 -0.8022 -0.0856 12 8 6.1044 -1.4509 0.8521 13 7 7.7612 -1.0183 -0.5586 14 6 8.2606 -0.2342 -1.6909 15 6 8.6128 -2.0380 0.0588 16 6 8.3932 -3.3602 -0.6300 17 1 7.6894 -3.4337 -1.4458 18 6 9.0863 -4.4773 -0.2146 19 7 9.9431 -4.3879 0.7791 20 14 8.8083 -6.1180 -1.0633 21 1 9.1542 -5.9959 -2.5023 22 1 9.6681 -7.1526 -0.4342 23 1 7.3824 -6.5099 -0.9283 24 6 3.3589 1.2632 -0.7213 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2569 1.8014 1.9563 29 1 2.6607 2.7673 1.4425 30 1 2.7081 -0.1984 2.1637 31 1 3.2990 1.1290 3.1915 32 1 5.1653 0.0609 1.9561 33 1 4.9436 1.7508 1.4424 34 1 6.1257 1.2198 -0.6442 35 1 5.4844 0.0006 -1.7714 36 1 8.0145 -0.7440 -2.6225 37 1 7.7966 0.7520 -1.6828 38 1 9.3423 -0.1276 -1.6099 39 1 8.3597 -2.1318 1.1149 40 1 9.6584 -1.7462 -0.0397 41 1 10.4304 -5.1739 1.0716 42 1 3.8025 2.2589 -0.7209 43 1 3.2112 0.9312 -1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331060172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:27 Heat of formation + Delta-G solvation = -126.053038 kcal Electronic energy + Delta-G solvation = -21523.757155 eV Core-core repulsion = 18374.275927 eV Total energy + Delta-G solvation = -3149.481228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03213 -39.87741 -37.21856 -36.39291 -34.74665 -33.28172 -31.13158 -30.08064 -28.08300 -27.29978 -27.05048 -24.74729 -23.41783 -22.35144 -20.50024 -19.82409 -18.69970 -17.79592 -17.15659 -16.91944 -16.60826 -16.42825 -16.22733 -15.95977 -15.48492 -14.85877 -14.44950 -14.17586 -14.13338 -13.69734 -13.45386 -13.39395 -13.38288 -13.14587 -12.88488 -12.80039 -12.62675 -12.50452 -12.50126 -12.18683 -12.08437 -11.82368 -11.72570 -11.39184 -11.14766 -11.04799 -10.64798 -10.31315 -10.29265 -9.35548 -8.22713 -6.37964 1.34483 1.39418 1.46658 1.94043 2.34332 2.52415 3.00858 3.06034 3.74263 3.78904 3.90206 4.02736 4.23194 4.33791 4.40071 4.46607 4.51057 4.58863 4.59975 4.63262 4.71523 4.75865 4.83536 4.86290 4.89783 4.92471 4.95992 5.01555 5.04430 5.11226 5.22409 5.34458 5.38336 5.42783 5.54219 5.60668 5.71076 5.88469 6.07090 6.45205 6.69980 6.86427 7.28855 7.58728 8.83928 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.004280 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.144842 B = 6540.585652 C = 6927.387518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.084 3.916 4 H 0.085 0.915 5 C -0.133 4.133 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.062 4.062 9 H 0.041 0.959 10 C -0.121 4.121 11 C 0.490 3.510 12 O -0.593 6.593 13 N -0.616 5.616 14 C 0.081 3.919 15 C 0.259 3.741 16 C -0.544 4.544 17 H 0.050 0.950 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.967 3.033 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.280 1.280 24 C -0.104 4.104 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.067 0.933 39 H -0.006 1.006 40 H 0.022 0.978 41 H 0.267 0.733 42 H 0.104 0.896 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.542 17.581 -5.664 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.027 3.973 4 H 0.102 0.898 5 C -0.171 4.171 6 C -0.147 4.147 7 C -0.154 4.154 8 C -0.081 4.081 9 H 0.059 0.941 10 C -0.161 4.161 11 C 0.280 3.720 12 O -0.474 6.474 13 N -0.348 5.348 14 C -0.061 4.061 15 C 0.138 3.862 16 C -0.583 4.583 17 H 0.069 0.931 18 C -0.192 4.192 19 N -0.569 5.569 20 Si 0.791 3.209 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.206 1.206 24 C -0.141 4.141 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.013 0.987 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.482 16.992 -5.093 23.545 hybrid contribution 0.135 -1.367 0.167 1.384 sum -15.347 15.626 -4.926 22.449 Atomic orbital electron populations 1.22893 0.80470 1.02996 1.00709 1.87999 1.20607 1.29173 1.95137 1.22295 0.94968 0.84355 0.95717 0.89753 1.22011 0.99671 0.99520 0.95874 1.21333 0.95386 0.99307 0.98702 1.21620 0.97356 1.00737 0.95661 1.20710 0.93297 0.99286 0.94791 0.94052 1.21810 0.95008 0.98157 1.01118 1.21578 0.82108 0.84903 0.83435 1.90612 1.73555 1.51860 1.31375 1.48246 1.14990 1.37630 1.33917 1.21907 1.00615 0.95772 0.87825 1.18722 0.88941 0.86113 0.92458 1.21693 1.23766 0.95183 1.17632 0.93145 1.25869 0.94624 1.02984 0.95702 1.70043 1.27195 1.31416 1.28232 0.85478 0.77878 0.78272 0.79241 1.18312 1.20087 1.20552 1.21718 0.93194 1.00388 0.98843 0.92661 0.90042 0.93433 0.91466 0.89066 0.94328 0.92193 0.94283 0.90825 0.86091 0.87504 0.92679 0.87880 0.91367 0.98738 0.96011 0.92381 0.87789 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.82 113.37 1.23 1.66 16 2 O -0.41 -10.12 9.00 -148.98 -1.34 -11.46 16 3 C 0.08 1.58 2.92 30.59 0.09 1.67 16 4 H 0.08 1.13 7.79 -2.39 -0.02 1.11 16 5 C -0.13 -2.45 5.63 30.59 0.17 -2.28 16 6 C -0.11 -2.87 5.78 30.59 0.18 -2.70 16 7 C -0.12 -3.45 4.95 30.59 0.15 -3.29 16 8 C -0.06 -1.77 1.69 -10.79 -0.02 -1.79 16 9 H 0.04 1.56 7.49 -2.39 -0.02 1.54 16 10 C -0.12 -3.41 3.73 29.85 0.11 -3.30 16 11 C 0.49 21.14 7.39 87.66 0.65 21.79 16 12 O -0.59 -32.09 13.54 -3.05 -0.04 -32.13 16 13 N -0.62 -27.19 2.86 -851.12 -2.43 -29.62 16 14 C 0.08 2.46 10.29 127.77 1.31 3.77 16 15 C 0.26 14.63 5.20 85.63 0.45 15.07 16 16 C -0.54 -32.75 9.39 25.60 0.24 -32.51 16 17 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 18 C 0.01 0.42 5.46 84.65 0.46 0.88 16 19 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 20 Si 0.97 46.43 29.54 68.60 2.03 48.45 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 24 C -0.10 -1.99 4.95 30.60 0.15 -1.84 16 25 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 0.70 7.87 -2.39 -0.02 0.68 16 28 H 0.07 1.11 7.87 -2.39 -0.02 1.10 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.22 7.68 -2.38 -0.02 1.20 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.54 5.95 -2.38 -0.01 1.52 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.12 2.50 7.40 -2.39 -0.02 2.48 16 35 H 0.11 2.57 8.11 -2.39 -0.02 2.55 16 36 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.10 2.14 6.44 -2.39 -0.02 2.13 16 38 H 0.07 2.03 7.89 -2.39 -0.02 2.01 16 39 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 40 H 0.02 1.24 7.89 -2.38 -0.02 1.22 16 41 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -79.83 338.73 4.63 -75.21 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.96 Total: 10.08 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.17 Total: -2.86 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -2.15 Total: -87.29 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -1.38 Total: -43.59 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -79.83 4.63 -75.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331060172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.846 kcal (2) G-P(sol) polarization free energy of solvation -79.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds