Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00302 * 2 1 4 4 H 1.09002 * 109.47002 * 29.99978 * 3 2 1 5 5 C 1.52997 * 109.47084 * 270.00169 * 3 2 1 6 6 C 1.52996 * 109.47165 * 299.99829 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 9 9 H 1.09000 * 109.47140 * 59.99976 * 8 7 6 10 10 C 1.52999 * 109.47269 * 180.02562 * 8 7 6 11 11 C 1.50710 * 109.46737 * 294.99692 * 10 8 7 12 12 O 1.21278 * 120.00035 * 0.02562 * 11 10 8 13 13 N 1.34782 * 119.99764 * 180.02562 * 11 10 8 14 14 C 1.46494 * 119.99828 * 359.97438 * 13 11 10 15 15 C 1.46494 * 119.99816 * 180.02562 * 13 11 10 16 16 C 1.50706 * 109.47188 * 89.99908 * 15 13 11 17 17 H 1.08001 * 119.99612 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00179 * 179.97438 * 16 15 13 19 19 N 1.31509 * 119.99736 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47117 * 89.99941 * 20 18 16 22 22 H 1.48499 * 109.46899 * 209.99972 * 20 18 16 23 23 H 1.48498 * 109.47346 * 329.99890 * 20 18 16 24 24 C 1.52999 * 109.47290 * 149.99514 * 3 2 1 25 25 H 1.08998 * 109.46826 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47264 * 300.00061 * 1 2 3 27 27 H 1.08992 * 109.47083 * 59.99999 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47375 * 59.99858 * 5 3 2 30 30 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 32 32 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 33 33 H 1.09001 * 109.47601 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47756 * 54.99411 * 10 8 7 35 35 H 1.09001 * 109.47317 * 175.00294 * 10 8 7 36 36 H 1.09002 * 109.47213 * 90.00223 * 14 13 11 37 37 H 1.09005 * 109.47211 * 209.99840 * 14 13 11 38 38 H 1.09001 * 109.47664 * 330.00222 * 14 13 11 39 39 H 1.08998 * 109.47384 * 209.99865 * 15 13 11 40 40 H 1.09008 * 109.47387 * 330.00254 * 15 13 11 41 41 H 0.97003 * 119.99924 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.47839 * 300.00449 * 24 3 2 43 43 H 1.09000 * 109.47160 * 180.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7973 -2.1637 7 6 4.5001 0.7550 -1.4424 8 6 4.2927 0.2891 0.0000 9 1 3.8493 -0.7066 0.0000 10 6 5.6413 0.2475 0.7215 11 6 6.5186 -0.8005 0.0863 12 8 6.1059 -1.4497 -0.8513 13 7 7.7617 -1.0162 0.5603 14 6 8.2603 -0.2316 1.6925 15 6 8.6147 -2.0345 -0.0575 16 6 9.4189 -1.4096 -1.1683 17 1 9.3056 -0.3591 -1.3919 18 6 10.2993 -2.1790 -1.8990 19 7 11.0007 -1.6338 -2.8687 20 14 10.4947 -3.9961 -1.5126 21 1 9.5264 -4.7808 -2.3200 22 1 11.8773 -4.4264 -1.8421 23 1 10.2357 -4.2258 -0.0685 24 6 3.3589 1.2632 0.7213 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.6607 2.7673 -1.4425 29 1 1.2569 1.8014 -1.9563 30 1 3.2996 1.1294 -3.1912 31 1 2.7081 -0.1984 -2.1637 32 1 4.9435 1.7508 -1.4425 33 1 5.1656 0.0615 -1.9565 34 1 6.1248 1.2213 0.6445 35 1 5.4841 0.0018 1.7717 36 1 8.0137 -0.7409 2.6241 37 1 9.3421 -0.1248 1.6122 38 1 7.7961 0.7546 1.6837 39 1 9.2898 -2.4466 0.6924 40 1 7.9924 -2.8320 -0.4638 41 1 11.6204 -2.1750 -3.3825 42 1 3.2112 0.9313 1.7489 43 1 3.8021 2.2591 0.7217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331060173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = -99.730459 kcal Electronic energy + Delta-G solvation = -21576.363543 eV Core-core repulsion = 18428.023747 eV Total energy + Delta-G solvation = -3148.339795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79766 -38.67575 -36.15670 -34.76181 -32.62597 -32.08309 -30.18563 -28.78131 -26.89019 -26.52996 -25.58572 -22.58900 -22.40975 -21.04627 -19.50489 -18.26878 -16.90554 -16.48504 -16.04598 -15.77252 -15.46163 -15.12414 -14.93621 -14.45670 -14.01333 -13.55635 -13.41086 -12.86537 -12.57764 -12.48361 -12.36762 -12.26252 -11.97933 -11.92651 -11.67593 -11.49274 -11.40803 -11.24265 -10.88216 -10.72079 -10.49698 -10.32517 -10.13377 -10.09061 -9.94329 -9.49725 -9.45782 -8.75806 -8.55078 -7.60528 -6.05110 -4.03314 3.32320 3.38300 3.40374 3.47757 3.72248 3.95642 4.43285 4.70565 4.74975 4.88548 5.10181 5.17793 5.19686 5.24937 5.28934 5.33974 5.49768 5.52375 5.52989 5.60853 5.64310 5.69688 5.85567 5.86008 5.89799 5.93233 5.97558 6.07219 6.21442 6.32355 6.46495 6.47235 6.76714 6.81068 6.86177 7.01812 7.17342 7.43235 7.66048 8.35436 8.52074 8.97809 9.10897 9.55861 11.08398 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.004234 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.186521 B = 6610.839298 C = 6818.500186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.091 3.909 4 H 0.055 0.945 5 C -0.140 4.140 6 C -0.110 4.110 7 C -0.121 4.121 8 C -0.064 4.064 9 H 0.085 0.915 10 C -0.136 4.136 11 C 0.506 3.494 12 O -0.536 6.536 13 N -0.602 5.602 14 C 0.085 3.915 15 C 0.215 3.785 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.111 4.111 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.036 0.964 41 H 0.264 0.736 42 H 0.066 0.934 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 7.659 9.667 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C 0.033 3.967 4 H 0.073 0.927 5 C -0.178 4.178 6 C -0.148 4.148 7 C -0.158 4.158 8 C -0.083 4.083 9 H 0.104 0.896 10 C -0.176 4.176 11 C 0.293 3.707 12 O -0.414 6.414 13 N -0.334 5.334 14 C -0.060 4.060 15 C 0.094 3.906 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.148 4.148 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.634 7.095 9.035 21.046 hybrid contribution 0.119 -0.527 0.132 0.556 sum -17.516 6.568 9.167 20.832 Atomic orbital electron populations 1.22747 0.81925 1.02490 0.99450 1.87999 1.18767 1.27683 1.94958 1.22113 0.94624 0.84410 0.95542 0.92675 1.22037 0.99948 0.99694 0.96122 1.21377 0.95560 0.99712 0.98140 1.21714 0.97297 1.01331 0.95451 1.20784 0.92708 1.00238 0.94542 0.89633 1.21777 0.96181 0.99169 1.00476 1.20416 0.81995 0.84472 0.83793 1.90627 1.73339 1.49419 1.27989 1.47869 1.14218 1.38655 1.32668 1.21636 1.01131 0.94867 0.88324 1.19635 0.89573 0.87758 0.93619 1.21348 1.21705 0.98197 1.15267 0.90825 1.24861 0.95272 0.98348 0.94589 1.69900 1.26366 1.36341 1.21153 0.86841 0.77514 0.85936 0.79341 1.19909 1.21125 1.19099 1.21713 0.93829 1.00276 0.98994 0.89886 0.94469 0.94373 0.91324 0.92465 0.92549 0.91336 0.93117 0.89167 0.89626 0.89846 0.93831 0.90762 0.92148 0.95444 0.94598 0.92623 0.91567 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.62 9.00 -35.23 -0.32 -4.94 16 3 C 0.09 0.97 2.92 -26.73 -0.08 0.90 16 4 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 5 C -0.14 -1.52 5.63 -26.73 -0.15 -1.67 16 6 C -0.11 -1.50 5.78 -26.73 -0.15 -1.66 16 7 C -0.12 -1.88 4.94 -26.73 -0.13 -2.02 16 8 C -0.06 -0.93 1.69 -90.62 -0.15 -1.08 16 9 H 0.09 1.46 7.50 -51.93 -0.39 1.07 16 10 C -0.14 -2.01 3.73 -27.88 -0.10 -2.11 16 11 C 0.51 10.42 7.39 -10.98 -0.08 10.34 16 12 O -0.54 -13.20 13.54 5.56 0.08 -13.13 16 13 N -0.60 -12.67 2.86 -182.95 -0.52 -13.20 16 14 C 0.08 1.32 10.24 59.84 0.61 1.93 16 15 C 0.21 5.39 4.23 -5.19 -0.02 5.37 16 16 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 17 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.11 -1.22 4.94 -26.73 -0.13 -1.36 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 27 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.56 7.87 -51.93 -0.41 0.16 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.78 5.95 -51.93 -0.31 1.48 16 34 H 0.09 1.14 7.40 -51.93 -0.38 0.75 16 35 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 38 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 39 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 40 H 0.04 0.96 6.85 -51.92 -0.36 0.61 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -34.28 335.40 -6.92 -41.20 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.57 Total: -1.26 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 0.26 Total: -3.72 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.25 Total: -40.51 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.24 Total: -18.07 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.28 -6.92 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331060173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.533 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds