Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00302 * 2 1 4 4 H 1.09002 * 109.47002 * 29.99978 * 3 2 1 5 5 C 1.52997 * 109.47084 * 270.00169 * 3 2 1 6 6 C 1.52996 * 109.47165 * 299.99829 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 9 9 H 1.09000 * 109.47140 * 59.99976 * 8 7 6 10 10 C 1.52999 * 109.47269 * 180.02562 * 8 7 6 11 11 C 1.50710 * 109.46737 * 294.99692 * 10 8 7 12 12 O 1.21278 * 120.00035 * 0.02562 * 11 10 8 13 13 N 1.34782 * 119.99764 * 180.02562 * 11 10 8 14 14 C 1.46494 * 119.99828 * 359.97438 * 13 11 10 15 15 C 1.46494 * 119.99816 * 180.02562 * 13 11 10 16 16 C 1.50706 * 109.47188 * 89.99908 * 15 13 11 17 17 H 1.08001 * 119.99612 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00179 * 179.97438 * 16 15 13 19 19 N 1.31509 * 119.99736 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47117 * 89.99941 * 20 18 16 22 22 H 1.48499 * 109.46899 * 209.99972 * 20 18 16 23 23 H 1.48498 * 109.47346 * 329.99890 * 20 18 16 24 24 C 1.52999 * 109.47290 * 149.99514 * 3 2 1 25 25 H 1.08998 * 109.46826 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47264 * 300.00061 * 1 2 3 27 27 H 1.08992 * 109.47083 * 59.99999 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47375 * 59.99858 * 5 3 2 30 30 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 32 32 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 33 33 H 1.09001 * 109.47601 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47756 * 54.99411 * 10 8 7 35 35 H 1.09001 * 109.47317 * 175.00294 * 10 8 7 36 36 H 1.09002 * 109.47213 * 90.00223 * 14 13 11 37 37 H 1.09005 * 109.47211 * 209.99840 * 14 13 11 38 38 H 1.09001 * 109.47664 * 330.00222 * 14 13 11 39 39 H 1.08998 * 109.47384 * 209.99865 * 15 13 11 40 40 H 1.09008 * 109.47387 * 330.00254 * 15 13 11 41 41 H 0.97003 * 119.99924 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.47839 * 300.00449 * 24 3 2 43 43 H 1.09000 * 109.47160 * 180.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1515 0.7973 -2.1637 7 6 4.5001 0.7550 -1.4424 8 6 4.2927 0.2891 0.0000 9 1 3.8493 -0.7066 0.0000 10 6 5.6413 0.2475 0.7215 11 6 6.5186 -0.8005 0.0863 12 8 6.1059 -1.4497 -0.8513 13 7 7.7617 -1.0162 0.5603 14 6 8.2603 -0.2316 1.6925 15 6 8.6147 -2.0345 -0.0575 16 6 9.4189 -1.4096 -1.1683 17 1 9.3056 -0.3591 -1.3919 18 6 10.2993 -2.1790 -1.8990 19 7 11.0007 -1.6338 -2.8687 20 14 10.4947 -3.9961 -1.5126 21 1 9.5264 -4.7808 -2.3200 22 1 11.8773 -4.4264 -1.8421 23 1 10.2357 -4.2258 -0.0685 24 6 3.3589 1.2632 0.7213 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.6607 2.7673 -1.4425 29 1 1.2569 1.8014 -1.9563 30 1 3.2996 1.1294 -3.1912 31 1 2.7081 -0.1984 -2.1637 32 1 4.9435 1.7508 -1.4425 33 1 5.1656 0.0615 -1.9565 34 1 6.1248 1.2213 0.6445 35 1 5.4841 0.0018 1.7717 36 1 8.0137 -0.7409 2.6241 37 1 9.3421 -0.1248 1.6122 38 1 7.7961 0.7546 1.6837 39 1 9.2898 -2.4466 0.6924 40 1 7.9924 -2.8320 -0.4638 41 1 11.6204 -2.1750 -3.3825 42 1 3.2112 0.9313 1.7489 43 1 3.8021 2.2591 0.7217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331060173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = -123.047173 kcal Electronic energy + Delta-G solvation = -21577.374631 eV Core-core repulsion = 18428.023747 eV Total energy + Delta-G solvation = -3149.350884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06673 -39.90425 -37.23593 -36.42930 -34.71811 -33.33553 -31.17075 -30.60900 -28.13424 -27.29487 -27.09106 -24.39394 -23.43064 -22.30300 -20.50961 -19.82976 -19.14420 -17.83879 -17.17940 -16.91513 -16.62662 -16.55157 -16.09566 -15.84645 -15.59720 -14.74440 -14.70686 -14.36818 -14.14785 -13.78379 -13.62660 -13.41068 -13.34702 -13.23289 -12.91783 -12.84388 -12.64413 -12.46934 -12.40165 -12.10301 -12.02370 -11.83508 -11.74973 -11.40969 -11.16257 -11.07918 -10.84003 -10.34870 -10.29724 -9.32614 -8.35006 -6.39633 1.30960 1.35490 1.43892 1.90274 2.30029 2.42696 2.99459 3.00256 3.72523 3.77351 3.87846 4.01378 4.22116 4.32099 4.39174 4.46075 4.50317 4.57514 4.60014 4.63071 4.69157 4.72840 4.76840 4.83791 4.87046 4.89113 4.91142 4.98073 5.01063 5.01453 5.10197 5.31921 5.35630 5.41768 5.45733 5.55755 5.67529 5.68968 6.24836 6.44452 6.61367 6.78082 7.21868 7.52518 8.82105 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.004234 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.186521 B = 6610.839298 C = 6818.500186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.086 3.914 4 H 0.085 0.915 5 C -0.134 4.134 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.059 4.059 9 H 0.051 0.949 10 C -0.123 4.123 11 C 0.491 3.509 12 O -0.590 6.590 13 N -0.613 5.613 14 C 0.077 3.923 15 C 0.223 3.777 16 C -0.535 4.535 17 H 0.028 0.972 18 C 0.010 3.990 19 N -0.946 5.946 20 Si 0.949 3.051 21 H -0.278 1.278 22 H -0.273 1.273 23 H -0.239 1.239 24 C -0.104 4.104 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.014 0.986 41 H 0.268 0.732 42 H 0.081 0.919 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.039 8.581 12.612 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.029 3.971 4 H 0.103 0.897 5 C -0.172 4.172 6 C -0.146 4.146 7 C -0.157 4.157 8 C -0.078 4.078 9 H 0.070 0.930 10 C -0.162 4.162 11 C 0.281 3.719 12 O -0.471 6.471 13 N -0.345 5.345 14 C -0.064 4.064 15 C 0.100 3.900 16 C -0.574 4.574 17 H 0.046 0.954 18 C -0.188 4.188 19 N -0.586 5.586 20 Si 0.771 3.229 21 H -0.204 1.204 22 H -0.198 1.198 23 H -0.162 1.162 24 C -0.141 4.141 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.987 8.053 12.033 23.878 hybrid contribution 0.524 -0.749 -0.857 1.253 sum -18.463 7.304 11.175 22.784 Atomic orbital electron populations 1.22901 0.80440 1.03100 1.00663 1.87979 1.20599 1.28908 1.95110 1.22252 0.95006 0.84492 0.95350 0.89676 1.22018 0.99597 0.99332 0.96259 1.21318 0.95239 0.99582 0.98456 1.21638 0.97348 1.00366 0.96397 1.20700 0.93320 0.99673 0.94119 0.93012 1.21818 0.94887 0.97820 1.01684 1.21578 0.82228 0.84901 0.83159 1.90609 1.74495 1.51568 1.30427 1.48034 1.14114 1.38500 1.33820 1.21958 1.00679 0.96246 0.87563 1.19289 0.89468 0.88274 0.92940 1.21579 1.22459 0.96385 1.16932 0.95400 1.25860 0.94776 1.03909 0.94232 1.70050 1.27405 1.38594 1.22553 0.85704 0.77751 0.78833 0.80585 1.20399 1.19777 1.16183 1.21714 0.93085 1.00217 0.99127 0.89779 0.92625 0.93657 0.89578 0.91336 0.92785 0.93705 0.91891 0.94561 0.87286 0.86258 0.90346 0.91888 0.88978 0.93420 0.96742 0.92275 0.90043 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.82 113.37 1.23 1.62 16 2 O -0.41 -9.40 9.00 -148.98 -1.34 -10.74 16 3 C 0.09 1.59 2.92 30.59 0.09 1.68 16 4 H 0.09 1.11 7.79 -2.39 -0.02 1.09 16 5 C -0.13 -2.62 5.63 30.59 0.17 -2.45 16 6 C -0.11 -3.00 5.78 30.59 0.18 -2.83 16 7 C -0.12 -3.84 4.94 30.59 0.15 -3.69 16 8 C -0.06 -1.66 1.69 -10.79 -0.02 -1.68 16 9 H 0.05 1.81 7.50 -2.39 -0.02 1.79 16 10 C -0.12 -3.36 3.73 29.85 0.11 -3.25 16 11 C 0.49 20.43 7.39 87.66 0.65 21.08 16 12 O -0.59 -30.69 13.54 -3.02 -0.04 -30.73 16 13 N -0.61 -25.57 2.86 -851.11 -2.43 -28.01 16 14 C 0.08 2.22 10.24 127.77 1.31 3.53 16 15 C 0.22 11.28 4.23 85.64 0.36 11.64 16 16 C -0.53 -32.45 9.94 25.60 0.25 -32.20 16 17 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 18 C 0.01 0.61 5.47 84.66 0.46 1.07 16 19 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 20 Si 0.95 45.79 27.47 68.60 1.88 47.68 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 24 C -0.10 -1.94 4.94 30.60 0.15 -1.79 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 0.66 8.09 -2.39 -0.02 0.64 16 27 H 0.04 0.63 7.87 -2.39 -0.02 0.61 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.43 7.68 -2.39 -0.02 1.41 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.55 5.95 -2.39 -0.01 1.53 16 34 H 0.11 2.52 7.40 -2.39 -0.02 2.51 16 35 H 0.12 2.46 8.11 -2.39 -0.02 2.44 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.95 8.07 -2.38 -0.02 1.93 16 38 H 0.09 2.04 6.44 -2.39 -0.02 2.02 16 39 H 0.05 2.21 7.13 -2.39 -0.02 2.19 16 40 H 0.01 0.79 6.85 -2.38 -0.02 0.78 16 41 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -81.15 335.40 4.37 -76.78 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.90 Total: 13.06 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 5.10 Total: -7.27 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -2.13 Total: -88.78 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.38 Total: -41.47 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.68 kcal Total: -81.15 4.37 -76.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331060173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.271 kcal (2) G-P(sol) polarization free energy of solvation -81.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds