Wall clock time and date at job start Mon Mar 30 2020 01:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46928 * 2 1 4 4 C 1.37100 * 120.00088 * 264.76348 * 3 2 1 5 5 H 1.07992 * 119.99688 * 138.85248 * 4 3 2 6 6 C 1.38949 * 119.99866 * 318.85819 * 4 3 2 7 7 N 1.31414 * 119.99954 * 341.82757 * 6 4 3 8 8 Si 1.86795 * 120.00039 * 161.82993 * 6 4 3 9 9 H 1.48498 * 109.47315 * 59.99705 * 8 6 4 10 10 H 1.48500 * 109.47281 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47224 * 299.99935 * 8 6 4 12 12 C 1.34778 * 120.00329 * 84.77301 * 3 2 1 13 13 O 1.21286 * 120.00430 * 179.97438 * 12 3 2 14 14 C 1.50707 * 119.99945 * 359.97438 * 12 3 2 15 15 O 1.42892 * 109.47324 * 180.02562 * 14 12 3 16 16 C 1.42898 * 114.00353 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.46911 * 89.99883 * 16 15 14 18 18 C 1.52996 * 109.46752 * 60.00462 * 17 16 15 19 19 C 1.53003 * 109.47236 * 59.99990 * 18 17 16 20 20 C 1.52999 * 109.46887 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47039 * 299.99555 * 19 18 17 22 22 C 1.52990 * 109.47724 * 210.00185 * 16 15 14 23 23 H 1.08995 * 109.47575 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47104 * 300.00281 * 1 2 3 25 25 H 1.08997 * 109.46917 * 60.00265 * 1 2 3 26 26 H 1.08994 * 109.47355 * 239.99338 * 2 1 3 27 27 H 1.09007 * 109.46886 * 119.99598 * 2 1 3 28 28 H 0.96998 * 119.99749 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46859 * 60.00066 * 14 12 3 30 30 H 1.09002 * 109.46769 * 300.00904 * 14 12 3 31 31 H 1.09000 * 109.46890 * 330.00534 * 16 15 14 32 32 H 1.08998 * 109.46889 * 300.00504 * 17 16 15 33 33 H 1.08996 * 109.47085 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.47452 * 299.99802 * 18 17 16 35 35 H 1.09002 * 109.47269 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.47416 * 59.99918 * 19 18 17 37 37 H 1.08999 * 109.47549 * 59.99966 * 20 19 18 38 38 H 1.09003 * 109.46739 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47522 * 299.99768 * 20 19 18 40 40 H 1.08995 * 109.47108 * 180.02562 * 21 19 18 41 41 H 1.08996 * 109.47313 * 300.00427 * 21 19 18 42 42 H 1.08996 * 109.47602 * 180.02562 * 22 16 15 43 43 H 1.09001 * 109.47075 * 59.99792 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9914 -1.1824 5 1 2.0743 3.0217 -1.3535 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0502 1.9004 -3.9238 9 1 3.6538 3.2564 -3.9699 10 1 3.8493 0.9744 -4.7659 11 1 1.6581 1.9606 -4.4374 12 6 2.1427 2.0521 1.1623 13 8 2.5473 3.1954 1.1624 14 6 1.7789 1.3815 2.4620 15 8 1.9946 2.2901 3.5436 16 6 1.6779 1.7504 4.8282 17 6 2.9191 1.0785 5.4192 18 6 4.0388 2.1113 5.5619 19 6 3.5784 3.2379 6.4891 20 6 4.6985 4.2703 6.6323 21 6 2.3374 3.9097 5.8982 22 6 1.2176 2.8768 5.7554 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.1593 -0.3122 -2.5279 29 1 2.4003 0.4968 2.6008 30 1 0.7293 1.0881 2.4381 31 1 0.8802 1.0146 4.7265 32 1 3.2470 0.2759 4.7585 33 1 2.6774 0.6664 6.3988 34 1 4.2804 2.5231 4.5820 35 1 4.9229 1.6328 5.9833 36 1 3.3369 2.8261 7.4690 37 1 4.9405 4.6821 5.6526 38 1 4.3703 5.0731 7.2925 39 1 5.5824 3.7914 7.0535 40 1 2.0096 4.7126 6.5585 41 1 2.5789 4.3214 4.9183 42 1 0.9765 2.4652 6.7354 43 1 0.3334 3.3555 5.3344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331079331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:05 Heat of formation + Delta-G solvation = -102.701285 kcal Electronic energy + Delta-G solvation = -21776.630966 eV Core-core repulsion = 18628.162346 eV Total energy + Delta-G solvation = -3148.468620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.37847 -38.29923 -36.02096 -34.78539 -32.09757 -31.58074 -30.64631 -29.42897 -27.57608 -25.88645 -24.36191 -22.57003 -22.22385 -21.08007 -19.48532 -19.03054 -16.79088 -16.18577 -15.91084 -15.47118 -15.16491 -14.61973 -14.24295 -14.01805 -14.00811 -13.59444 -12.96792 -12.94678 -12.81983 -12.63388 -12.19769 -12.02673 -11.77407 -11.62075 -11.37654 -11.33353 -11.23855 -11.01100 -10.93065 -10.88035 -10.43174 -10.34414 -10.28634 -10.13245 -10.04831 -9.87887 -9.07433 -8.87606 -8.27155 -7.39400 -6.29469 -3.97924 3.22370 3.27219 3.30329 3.81921 3.96726 4.27480 4.79273 4.82536 4.88655 5.02596 5.15185 5.24512 5.26823 5.37233 5.51891 5.59860 5.64977 5.68698 5.74915 5.78433 5.85933 5.87497 5.94001 5.96374 5.98935 6.11615 6.14089 6.20588 6.31896 6.33729 6.39807 6.46172 6.48155 6.48831 6.73504 6.85778 7.20404 7.59439 7.61491 8.33476 8.57409 9.24094 9.41554 10.06087 10.76039 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.004588 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.985029 B = 6101.946063 C = 6508.790574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.443 5.443 4 C -0.306 4.306 5 H 0.088 0.912 6 C 0.038 3.962 7 N -0.874 5.874 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.466 3.534 13 O -0.560 6.560 14 C 0.049 3.951 15 O -0.348 6.348 16 C 0.084 3.916 17 C -0.140 4.140 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.147 4.147 21 C -0.112 4.112 22 C -0.112 4.112 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.268 0.732 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -1.695 13.838 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.165 5.165 4 C -0.434 4.434 5 H 0.105 0.895 6 C -0.166 4.166 7 N -0.511 5.511 8 Si 0.746 3.254 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.253 3.747 13 O -0.441 6.441 14 C -0.031 4.031 15 O -0.266 6.266 16 C 0.026 3.974 17 C -0.177 4.177 18 C -0.148 4.148 19 C -0.107 4.107 20 C -0.204 4.204 21 C -0.150 4.150 22 C -0.149 4.149 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.123 0.877 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.511 -1.071 13.705 14.188 hybrid contribution -0.057 -0.381 -0.808 0.896 sum -3.568 -1.452 12.897 13.460 Atomic orbital electron populations 1.22241 0.98234 1.00366 1.01602 1.21471 0.91608 0.85675 1.03450 1.43376 1.56892 1.11766 1.04458 1.19324 1.34876 0.98612 0.90617 0.89483 1.25426 0.93972 0.96598 1.00591 1.69921 1.29546 1.17592 1.34066 0.86117 0.78347 0.78863 0.82074 1.19712 1.20996 1.19883 1.20080 0.82307 0.88149 0.84207 1.90537 1.48638 1.18419 1.86471 1.22433 0.99745 0.92926 0.88040 1.88072 1.87514 1.38316 1.12733 1.22082 0.95460 0.95187 0.84679 1.22006 0.96691 0.98427 1.00616 1.21488 0.96926 0.95616 1.00809 1.21096 0.95365 0.95835 0.98378 1.21823 0.98054 0.98642 1.01918 1.21516 0.94276 0.97206 1.01989 1.21578 0.98763 0.96486 0.98079 0.93047 0.93971 0.92251 0.87710 0.93594 0.92251 0.91893 0.92161 0.92709 0.91867 0.91668 0.90531 0.92676 0.92039 0.92320 0.93097 0.93082 0.92642 0.90368 0.91328 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.15 37.16 0.38 -2.57 16 2 C 0.10 2.21 5.41 -4.04 -0.02 2.19 16 3 N -0.44 -11.42 2.50 -114.81 -0.29 -11.71 16 4 C -0.31 -8.62 8.84 -14.93 -0.13 -8.76 16 5 H 0.09 2.56 7.82 -52.49 -0.41 2.15 16 6 C 0.04 1.03 4.95 -17.47 -0.09 0.94 16 7 N -0.87 -23.79 11.61 55.50 0.64 -23.14 16 8 Si 0.92 20.81 29.59 -169.99 -5.03 15.78 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.47 11.94 7.67 -10.98 -0.08 11.85 16 13 O -0.56 -16.65 16.41 -14.36 -0.24 -16.89 16 14 C 0.05 0.96 4.83 36.01 0.17 1.13 16 15 O -0.35 -6.71 8.17 -55.14 -0.45 -7.16 16 16 C 0.08 1.20 2.92 -26.73 -0.08 1.12 16 17 C -0.14 -1.81 5.63 -26.73 -0.15 -1.96 16 18 C -0.11 -1.51 5.06 -26.73 -0.14 -1.64 16 19 C -0.09 -1.06 2.72 -90.62 -0.25 -1.31 16 20 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 21 C -0.11 -1.47 5.06 -26.73 -0.14 -1.60 16 22 C -0.11 -1.39 5.66 -26.73 -0.15 -1.55 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.10 2.49 5.76 -51.93 -0.30 2.19 16 27 H 0.05 0.90 6.66 -51.92 -0.35 0.55 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.06 1.16 7.14 -51.93 -0.37 0.79 16 30 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16 31 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 32 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.29 7.68 -51.93 -0.40 0.89 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -31.76 337.04 -8.11 -39.87 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.50 Total: 1.66 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.33 Total: -3.47 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.36 Total: -34.85 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.69 Total: -24.05 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.76 -8.11 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331079331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.835 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds