Wall clock time and date at job start Mon Mar 30 2020 01:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46928 * 2 1 4 4 C 1.37100 * 120.00088 * 264.76348 * 3 2 1 5 5 H 1.07992 * 119.99688 * 138.85248 * 4 3 2 6 6 C 1.38949 * 119.99866 * 318.85819 * 4 3 2 7 7 N 1.31414 * 119.99954 * 341.82757 * 6 4 3 8 8 Si 1.86795 * 120.00039 * 161.82993 * 6 4 3 9 9 H 1.48498 * 109.47315 * 59.99705 * 8 6 4 10 10 H 1.48500 * 109.47281 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47224 * 299.99935 * 8 6 4 12 12 C 1.34778 * 120.00329 * 84.77301 * 3 2 1 13 13 O 1.21286 * 120.00430 * 179.97438 * 12 3 2 14 14 C 1.50707 * 119.99945 * 359.97438 * 12 3 2 15 15 O 1.42892 * 109.47324 * 180.02562 * 14 12 3 16 16 C 1.42898 * 114.00353 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.46911 * 89.99883 * 16 15 14 18 18 C 1.52996 * 109.46752 * 60.00462 * 17 16 15 19 19 C 1.53003 * 109.47236 * 59.99990 * 18 17 16 20 20 C 1.52999 * 109.46887 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47039 * 299.99555 * 19 18 17 22 22 C 1.52990 * 109.47724 * 210.00185 * 16 15 14 23 23 H 1.08995 * 109.47575 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47104 * 300.00281 * 1 2 3 25 25 H 1.08997 * 109.46917 * 60.00265 * 1 2 3 26 26 H 1.08994 * 109.47355 * 239.99338 * 2 1 3 27 27 H 1.09007 * 109.46886 * 119.99598 * 2 1 3 28 28 H 0.96998 * 119.99749 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46859 * 60.00066 * 14 12 3 30 30 H 1.09002 * 109.46769 * 300.00904 * 14 12 3 31 31 H 1.09000 * 109.46890 * 330.00534 * 16 15 14 32 32 H 1.08998 * 109.46889 * 300.00504 * 17 16 15 33 33 H 1.08996 * 109.47085 * 180.02562 * 17 16 15 34 34 H 1.08999 * 109.47452 * 299.99802 * 18 17 16 35 35 H 1.09002 * 109.47269 * 179.97438 * 18 17 16 36 36 H 1.08996 * 109.47416 * 59.99918 * 19 18 17 37 37 H 1.08999 * 109.47549 * 59.99966 * 20 19 18 38 38 H 1.09003 * 109.46739 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47522 * 299.99768 * 20 19 18 40 40 H 1.08995 * 109.47108 * 180.02562 * 21 19 18 41 41 H 1.08996 * 109.47313 * 300.00427 * 21 19 18 42 42 H 1.08996 * 109.47602 * 180.02562 * 22 16 15 43 43 H 1.09001 * 109.47075 * 59.99792 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9914 -1.1824 5 1 2.0743 3.0217 -1.3535 6 6 3.0372 1.2841 -2.1605 7 7 3.6791 0.1817 -1.8450 8 14 3.0502 1.9004 -3.9238 9 1 3.6538 3.2564 -3.9699 10 1 3.8493 0.9744 -4.7659 11 1 1.6581 1.9606 -4.4374 12 6 2.1427 2.0521 1.1623 13 8 2.5473 3.1954 1.1624 14 6 1.7789 1.3815 2.4620 15 8 1.9946 2.2901 3.5436 16 6 1.6779 1.7504 4.8282 17 6 2.9191 1.0785 5.4192 18 6 4.0388 2.1113 5.5619 19 6 3.5784 3.2379 6.4891 20 6 4.6985 4.2703 6.6323 21 6 2.3374 3.9097 5.8982 22 6 1.2176 2.8768 5.7554 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.1593 -0.3122 -2.5279 29 1 2.4003 0.4968 2.6008 30 1 0.7293 1.0881 2.4381 31 1 0.8802 1.0146 4.7265 32 1 3.2470 0.2759 4.7585 33 1 2.6774 0.6664 6.3988 34 1 4.2804 2.5231 4.5820 35 1 4.9229 1.6328 5.9833 36 1 3.3369 2.8261 7.4690 37 1 4.9405 4.6821 5.6526 38 1 4.3703 5.0731 7.2925 39 1 5.5824 3.7914 7.0535 40 1 2.0096 4.7126 6.5585 41 1 2.5789 4.3214 4.9183 42 1 0.9765 2.4652 6.7354 43 1 0.3334 3.3555 5.3344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331079331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:04 Heat of formation + Delta-G solvation = -120.824762 kcal Electronic energy + Delta-G solvation = -21777.416859 eV Core-core repulsion = 18628.162346 eV Total energy + Delta-G solvation = -3149.254513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78803 -39.93727 -37.38800 -36.72698 -34.07714 -32.69071 -31.66645 -31.17878 -29.25836 -26.98146 -26.26443 -23.95110 -23.56764 -22.10572 -21.04588 -20.44674 -18.75653 -17.86699 -17.25317 -17.16749 -16.72831 -16.16233 -15.83290 -15.47502 -15.11508 -14.81478 -14.64537 -14.47338 -14.06085 -13.85438 -13.56994 -13.52465 -13.36471 -13.09753 -12.85707 -12.69749 -12.52810 -12.39709 -12.35148 -12.22014 -12.10085 -11.97163 -11.83322 -11.36443 -11.16786 -10.91958 -10.87726 -10.33831 -10.27799 -9.42650 -8.35618 -6.12799 1.39501 1.40269 1.50890 2.00792 2.21822 2.55592 2.99262 3.38073 3.79207 3.83212 3.90848 4.01730 4.11180 4.22871 4.26324 4.32349 4.41166 4.43653 4.54796 4.61831 4.66298 4.71359 4.77009 4.83521 4.89937 4.98550 5.00454 5.02592 5.13499 5.16233 5.28879 5.33245 5.37432 5.41376 5.43856 5.45762 5.52996 5.68848 6.18205 6.32505 6.60280 7.18234 7.41920 8.05435 8.68356 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.004588 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.985029 B = 6101.946063 C = 6508.790574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.452 5.452 4 C -0.344 4.344 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.891 5.891 8 Si 0.983 3.017 9 H -0.280 1.280 10 H -0.269 1.269 11 H -0.261 1.261 12 C 0.445 3.555 13 O -0.619 6.619 14 C 0.066 3.934 15 O -0.381 6.381 16 C 0.072 3.928 17 C -0.137 4.137 18 C -0.112 4.112 19 C -0.084 4.084 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.109 4.109 23 H 0.089 0.911 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.274 0.726 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.106 0.894 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -3.535 15.562 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 N -0.173 5.173 4 C -0.472 4.472 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.528 5.528 8 Si 0.807 3.193 9 H -0.206 1.206 10 H -0.194 1.194 11 H -0.185 1.185 12 C 0.234 3.766 13 O -0.505 6.505 14 C -0.013 4.013 15 O -0.300 6.300 16 C 0.015 3.985 17 C -0.174 4.174 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.204 4.204 21 C -0.150 4.150 22 C -0.147 4.147 23 H 0.108 0.892 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.124 0.876 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.708 -2.963 15.436 16.407 hybrid contribution 0.356 0.192 -1.310 1.371 sum -4.352 -2.772 14.126 15.039 Atomic orbital electron populations 1.22126 0.94982 1.02761 1.01401 1.21628 0.94243 0.83208 1.03281 1.43696 1.56422 1.13127 1.04046 1.19299 1.36965 0.98224 0.92687 0.92337 1.26173 0.92886 0.96584 1.04042 1.69984 1.29284 1.18132 1.35441 0.85165 0.79022 0.77971 0.77187 1.20550 1.19394 1.18536 1.21132 0.81473 0.87753 0.86211 1.90483 1.51323 1.21066 1.87620 1.22173 1.01426 0.92251 0.85473 1.88071 1.88119 1.39307 1.14469 1.22489 0.96836 0.96488 0.82693 1.22023 0.95601 0.97671 1.02146 1.21478 0.98143 0.96551 0.98807 1.21106 0.94818 0.95276 0.99051 1.21828 0.98598 0.99140 1.00869 1.21499 0.95405 0.98179 0.99960 1.21640 0.97920 0.95755 0.99354 0.89237 0.92725 0.93917 0.89969 0.91547 0.91624 0.90463 0.89206 0.90438 0.92710 0.88125 0.95293 0.91359 0.89049 0.94955 0.91533 0.91868 0.90820 0.95000 0.87607 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 10.15 71.98 0.73 -4.46 16 2 C 0.10 4.24 5.41 86.38 0.47 4.71 16 3 N -0.45 -23.94 2.50 -635.54 -1.59 -25.54 16 4 C -0.34 -20.13 8.84 84.04 0.74 -19.39 16 5 H 0.06 3.67 7.82 -2.91 -0.02 3.65 16 6 C 0.01 0.32 4.95 84.93 0.42 0.74 16 7 N -0.89 -48.88 11.61 21.66 0.25 -48.63 16 8 Si 0.98 43.13 29.59 68.60 2.03 45.16 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 C 0.45 23.67 7.67 87.66 0.67 24.34 16 13 O -0.62 -39.23 16.41 15.99 0.26 -38.97 16 14 C 0.07 2.60 4.83 71.24 0.34 2.95 16 15 O -0.38 -14.84 8.17 -129.94 -1.06 -15.91 16 16 C 0.07 1.92 2.92 30.59 0.09 2.01 16 17 C -0.14 -3.23 5.63 30.60 0.17 -3.05 16 18 C -0.11 -2.99 5.06 30.59 0.15 -2.83 16 19 C -0.08 -1.89 2.72 -10.79 -0.03 -1.92 16 20 C -0.15 -3.23 9.19 71.98 0.66 -2.57 16 21 C -0.11 -2.87 5.06 30.60 0.15 -2.72 16 22 C -0.11 -2.48 5.66 30.59 0.17 -2.31 16 23 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.05 1.69 6.60 -2.39 -0.02 1.67 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.08 3.90 5.76 -2.39 -0.01 3.88 16 27 H 0.07 2.51 6.66 -2.38 -0.02 2.49 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.08 2.77 7.14 -2.39 -0.02 2.75 16 30 H 0.09 2.94 6.48 -2.39 -0.02 2.93 16 31 H 0.08 1.71 7.79 -2.39 -0.02 1.69 16 32 H 0.05 1.37 7.87 -2.39 -0.02 1.35 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.03 1.03 7.68 -2.39 -0.02 1.01 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.03 1.09 7.68 -2.39 -0.02 1.07 16 42 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -74.16 337.04 5.61 -68.55 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.96 Total: 19.84 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 4.75 Total: -4.51 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.34 Total: -74.17 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.80 Total: -54.87 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.16 5.61 -68.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331079331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.271 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds