Wall clock time and date at job start Mon Mar 30 2020 01:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47161 * 2 1 4 4 C 1.37104 * 120.00139 * 263.78643 * 3 2 1 5 5 H 1.07997 * 119.99961 * 188.71265 * 4 3 2 6 6 C 1.38953 * 119.99598 * 8.72174 * 4 3 2 7 7 N 1.31413 * 120.00420 * 24.21423 * 6 4 3 8 8 Si 1.86797 * 119.99558 * 204.22496 * 6 4 3 9 9 H 1.48499 * 109.47455 * 84.98194 * 8 6 4 10 10 H 1.48502 * 109.46830 * 204.97807 * 8 6 4 11 11 H 1.48497 * 109.47385 * 324.97544 * 8 6 4 12 12 C 1.34773 * 120.00146 * 84.06019 * 3 2 1 13 13 O 1.21298 * 120.00149 * 179.72561 * 12 3 2 14 14 C 1.50698 * 120.00084 * 359.72583 * 12 3 2 15 15 C 1.53002 * 109.47321 * 179.97438 * 14 12 3 16 16 H 1.09001 * 109.46684 * 55.00192 * 15 14 12 17 17 C 1.53001 * 109.47119 * 295.00260 * 15 14 12 18 18 C 1.53005 * 109.46774 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47061 * 60.00122 * 18 17 15 20 20 C 1.53001 * 109.47227 * 299.99601 * 19 18 17 21 21 H 1.09001 * 109.47287 * 300.00577 * 20 19 18 22 22 O 1.42891 * 109.47354 * 180.02562 * 20 19 18 23 23 C 1.42905 * 114.00104 * 89.99931 * 22 20 19 24 24 C 1.53003 * 109.46957 * 175.00234 * 15 14 12 25 25 H 1.08999 * 109.47188 * 300.00020 * 1 2 3 26 26 H 1.08995 * 109.47144 * 60.00000 * 1 2 3 27 27 H 1.08996 * 109.47244 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47188 * 239.99979 * 2 1 3 29 29 H 1.09001 * 109.47280 * 119.99569 * 2 1 3 30 30 H 0.96993 * 120.00065 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47422 * 300.00125 * 14 12 3 32 32 H 1.09002 * 109.47000 * 60.00066 * 14 12 3 33 33 H 1.09001 * 109.46960 * 299.99999 * 17 15 14 34 34 H 1.08991 * 109.47325 * 59.99861 * 17 15 14 35 35 H 1.09001 * 109.46925 * 299.99868 * 18 17 15 36 36 H 1.09001 * 109.46865 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.46570 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47266 * 59.99554 * 19 18 17 39 39 H 1.09001 * 109.47107 * 300.00288 * 23 22 20 40 40 H 1.08992 * 109.46907 * 60.00258 * 23 22 20 41 41 H 1.08996 * 109.46961 * 180.02562 * 23 22 20 42 42 H 1.09001 * 109.46985 * 299.99922 * 24 15 14 43 43 H 1.08994 * 109.47606 * 59.99765 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3680 1.9847 -1.1804 5 1 2.8582 2.9469 -1.1704 6 6 2.0915 1.3583 -2.3895 7 7 1.1202 0.4764 -2.4656 8 14 3.1006 1.7696 -3.9066 9 1 4.3326 0.9406 -3.9214 10 1 2.2998 1.4879 -5.1250 11 1 3.4716 3.2073 -3.8796 12 6 2.1291 2.0568 1.1609 13 8 2.5381 3.1987 1.1614 14 6 1.7448 1.3936 2.4583 15 6 1.9646 2.3704 3.6152 16 1 1.4182 3.2932 3.4203 17 6 3.4574 2.6794 3.7452 18 6 3.6771 3.6567 4.9017 19 6 3.1709 3.0298 6.2024 20 6 1.6780 2.7209 6.0724 21 1 1.1316 3.6436 5.8770 22 8 1.2051 2.1359 7.2873 23 6 0.7268 3.0856 8.2420 24 6 1.4585 1.7429 4.9157 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.9270 0.0394 -3.3097 31 1 0.6946 1.1041 2.4213 32 1 2.3608 0.5072 2.6097 33 1 4.0038 1.7565 3.9401 34 1 3.8180 3.1263 2.8188 35 1 3.1307 4.5795 4.7064 36 1 4.7407 3.8765 4.9946 37 1 3.3278 3.7260 7.0263 38 1 3.7172 2.1070 6.3977 39 1 1.5317 3.7712 8.5071 40 1 -0.1020 3.6475 7.8117 41 1 0.3865 2.5625 9.1357 42 1 0.3949 1.5229 4.8230 43 1 2.0048 0.8201 5.1106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331081775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:40 Heat of formation + Delta-G solvation = -94.860319 kcal Electronic energy + Delta-G solvation = -21721.629386 eV Core-core repulsion = 18573.500775 eV Total energy + Delta-G solvation = -3148.128610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.48724 -38.37113 -36.42699 -34.92212 -32.22521 -31.52162 -29.94861 -29.33661 -27.03040 -26.46912 -24.47073 -22.25492 -22.12716 -21.30435 -19.67088 -18.55894 -16.77633 -16.42031 -15.97690 -15.54831 -15.12363 -14.76219 -14.51089 -14.13594 -13.97231 -13.51481 -13.31671 -12.74398 -12.70726 -12.46009 -12.17337 -11.85424 -11.70091 -11.68232 -11.42689 -11.09825 -10.98981 -10.84724 -10.73155 -10.70076 -10.32236 -10.23675 -10.14237 -10.09894 -10.00139 -9.72627 -9.36876 -8.84850 -8.20695 -7.69477 -6.31345 -3.73509 3.18019 3.27776 3.32293 3.70268 3.95741 4.16658 4.79802 4.83339 4.99862 5.11000 5.15244 5.21373 5.23221 5.39274 5.41975 5.49213 5.57393 5.64456 5.70018 5.74364 5.98038 6.00521 6.05499 6.13062 6.16973 6.18610 6.26836 6.43956 6.44886 6.53194 6.65222 6.70667 6.79831 6.85998 6.97109 7.21188 7.31066 7.51109 7.77546 8.15084 8.56580 9.24102 9.51444 10.07490 10.69108 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.004262 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.803975 B = 6567.717517 C = 7140.740336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 N -0.444 5.444 4 C -0.305 4.305 5 H 0.103 0.897 6 C 0.029 3.971 7 N -0.869 5.869 8 Si 0.918 3.082 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.444 3.556 13 O -0.592 6.592 14 C -0.125 4.125 15 C -0.062 4.062 16 H 0.075 0.925 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.138 4.138 20 C 0.090 3.910 21 H 0.059 0.941 22 O -0.388 6.388 23 C 0.032 3.968 24 C -0.110 4.110 25 H 0.023 0.977 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 0.110 14.353 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.003 4.003 3 N -0.163 5.163 4 C -0.433 4.433 5 H 0.121 0.879 6 C -0.174 4.174 7 N -0.509 5.509 8 Si 0.745 3.255 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.233 3.767 13 O -0.478 6.478 14 C -0.165 4.165 15 C -0.081 4.081 16 H 0.093 0.907 17 C -0.158 4.158 18 C -0.151 4.151 19 C -0.176 4.176 20 C 0.033 3.967 21 H 0.077 0.923 22 O -0.307 6.307 23 C -0.065 4.065 24 C -0.148 4.148 25 H 0.042 0.958 26 H 0.110 0.890 27 H 0.055 0.945 28 H 0.118 0.882 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.006 0.338 14.202 14.206 hybrid contribution 0.246 0.217 -0.755 0.823 sum 0.252 0.555 13.448 13.462 Atomic orbital electron populations 1.22120 0.96793 0.99725 1.01963 1.21425 0.94447 0.83786 1.00609 1.43842 1.55554 1.11312 1.05548 1.19727 1.35723 1.05604 0.82242 0.87902 1.25172 0.96037 0.97261 0.98913 1.70107 1.25345 1.28814 1.26601 0.86074 0.79870 0.79128 0.80454 1.20458 1.21204 1.19573 1.19945 0.84865 0.86917 0.85013 1.90455 1.51836 1.18621 1.86847 1.21601 1.02190 0.98863 0.93878 1.20766 0.96930 0.98588 0.91776 0.90676 1.21736 0.95708 0.98737 0.99585 1.21474 1.00521 0.99036 0.94113 1.22036 0.96262 1.01185 0.98083 1.22198 0.93899 0.96312 0.84319 0.92279 1.87897 1.82206 1.33667 1.26966 1.22738 0.97735 0.93332 0.92705 1.21689 1.01631 0.98556 0.92923 0.95778 0.89006 0.94483 0.88154 0.95057 0.92388 0.90351 0.90793 0.92981 0.88861 0.92065 0.92107 0.92589 0.91361 0.94323 0.94185 0.90003 0.91585 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.64 37.16 0.36 -2.73 16 2 C 0.12 2.69 5.07 -4.04 -0.02 2.67 16 3 N -0.44 -11.20 2.64 -114.81 -0.30 -11.51 16 4 C -0.31 -8.41 9.43 -14.93 -0.14 -8.55 16 5 H 0.10 3.00 7.30 -52.49 -0.38 2.62 16 6 C 0.03 0.74 4.92 -17.47 -0.09 0.65 16 7 N -0.87 -22.18 8.57 55.50 0.48 -21.71 16 8 Si 0.92 20.48 29.62 -169.99 -5.03 15.45 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.44 10.58 7.30 -10.99 -0.08 10.50 16 13 O -0.59 -15.73 13.56 5.54 0.08 -15.66 16 14 C -0.13 -2.30 3.79 -27.88 -0.11 -2.40 16 15 C -0.06 -1.01 1.84 -90.62 -0.17 -1.18 16 16 H 0.07 1.35 7.95 -51.93 -0.41 0.94 16 17 C -0.12 -1.95 4.94 -26.73 -0.13 -2.08 16 18 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 19 C -0.14 -1.69 5.54 -26.73 -0.15 -1.84 16 20 C 0.09 1.16 2.61 -26.70 -0.07 1.09 16 21 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 22 O -0.39 -5.03 10.35 -35.23 -0.36 -5.40 16 23 C 0.03 0.30 10.82 101.05 1.09 1.39 16 24 C -0.11 -1.53 4.86 -26.70 -0.13 -1.66 16 25 H 0.02 0.46 6.50 -51.93 -0.34 0.13 16 26 H 0.09 2.20 6.35 -51.93 -0.33 1.87 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 2.42 5.83 -51.93 -0.30 2.11 16 29 H 0.03 0.61 6.69 -51.93 -0.35 0.26 16 30 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.08 1.38 6.45 -51.93 -0.33 1.04 16 32 H 0.07 1.26 7.41 -51.93 -0.38 0.87 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.83 5.95 -51.93 -0.31 1.52 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.61 7.87 -51.93 -0.41 0.21 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 40 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 328.23 15.07 4.95 4.95 Total: -1.00 -28.89 328.23 -7.29 -36.18 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.30 Total: 3.53 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 0.21 Total: -5.83 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.17 Total: -33.21 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.29 Total: -21.06 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.89 -7.29 -36.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331081775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.683 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds