Wall clock time and date at job start Mon Mar 30 2020 01:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47160 * 2 1 4 4 C 1.37095 * 120.00135 * 264.74018 * 3 2 1 5 5 H 1.08003 * 119.99861 * 146.16446 * 4 3 2 6 6 C 1.38952 * 120.00176 * 326.17481 * 4 3 2 7 7 N 1.31414 * 119.99370 * 337.67735 * 6 4 3 8 8 Si 1.86793 * 119.99947 * 157.68191 * 6 4 3 9 9 H 1.48498 * 109.47074 * 90.00007 * 8 6 4 10 10 H 1.48498 * 109.47089 * 209.99406 * 8 6 4 11 11 H 1.48492 * 109.47478 * 329.99859 * 8 6 4 12 12 C 1.34779 * 120.00022 * 84.74711 * 3 2 1 13 13 O 1.21288 * 119.99845 * 179.97438 * 12 3 2 14 14 C 1.50707 * 120.00057 * 359.97438 * 12 3 2 15 15 C 1.52996 * 109.47145 * 179.97438 * 14 12 3 16 16 H 1.09000 * 109.47309 * 305.00177 * 15 14 12 17 17 C 1.53006 * 109.46751 * 65.00029 * 15 14 12 18 18 C 1.53004 * 109.47003 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47148 * 300.00516 * 18 17 15 20 20 C 1.52996 * 109.47631 * 59.99865 * 19 18 17 21 21 H 1.09000 * 109.47091 * 59.99818 * 20 19 18 22 22 O 1.42901 * 109.47339 * 180.02562 * 20 19 18 23 23 C 1.42897 * 113.99747 * 269.99696 * 22 20 19 24 24 C 1.52996 * 109.47157 * 184.99951 * 15 14 12 25 25 H 1.09003 * 109.46694 * 59.99884 * 1 2 3 26 26 H 1.08996 * 109.47705 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47284 * 300.00625 * 1 2 3 28 28 H 1.09002 * 109.47388 * 239.99786 * 2 1 3 29 29 H 1.09003 * 109.46694 * 120.00115 * 2 1 3 30 30 H 0.97000 * 119.99174 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46816 * 59.99755 * 14 12 3 32 32 H 1.08994 * 109.46849 * 300.00466 * 14 12 3 33 33 H 1.08994 * 109.47459 * 299.99626 * 17 15 14 34 34 H 1.09000 * 109.47093 * 60.00015 * 17 15 14 35 35 H 1.09003 * 109.46565 * 59.99848 * 18 17 15 36 36 H 1.08993 * 109.47010 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47031 * 299.99647 * 19 18 17 38 38 H 1.09003 * 109.47146 * 179.97438 * 19 18 17 39 39 H 1.09009 * 109.47344 * 300.00387 * 23 22 20 40 40 H 1.09005 * 109.46933 * 59.99640 * 23 22 20 41 41 H 1.09000 * 109.47395 * 180.02562 * 23 22 20 42 42 H 1.09000 * 109.47195 * 300.00296 * 24 15 14 43 43 H 1.09003 * 109.46914 * 59.99897 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3495 1.9912 -1.1823 5 1 2.1816 3.0506 -1.3088 6 6 2.9008 1.2466 -2.2178 7 7 3.5052 0.1087 -1.9592 8 14 2.7828 1.8630 -3.9771 9 1 3.9652 2.7065 -4.2864 10 1 2.7446 0.7049 -4.9058 11 1 1.5451 2.6675 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5470 3.1955 1.1623 14 6 1.7779 1.3818 2.4619 15 6 2.0096 2.3544 3.6200 16 1 3.0375 2.7160 3.5907 17 6 1.0487 3.5382 3.4918 18 6 1.2800 4.5105 4.6503 19 6 1.0295 3.7916 5.9774 20 6 1.9903 2.6079 6.1056 21 1 3.0182 2.9695 6.0767 22 8 1.7559 1.9360 7.3448 23 6 2.5350 2.4359 8.4334 24 6 1.7594 1.6358 4.9474 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8898 -0.4113 -2.6821 31 1 2.3992 0.4971 2.6010 32 1 0.7284 1.0885 2.4377 33 1 1.2270 4.0501 2.5463 34 1 0.0209 3.1766 3.5211 35 1 2.3079 4.8721 4.6214 36 1 0.5952 5.3536 4.5592 37 1 0.0016 3.4300 6.0063 38 1 1.1947 4.4842 6.8027 39 1 3.5947 2.3251 8.2028 40 1 2.3058 3.4899 8.5904 41 1 2.2995 1.8738 9.3371 42 1 0.7315 1.2743 4.9767 43 1 2.4439 0.7925 5.0386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331081776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:42 Heat of formation + Delta-G solvation = -103.215349 kcal Electronic energy + Delta-G solvation = -21687.183652 eV Core-core repulsion = 18538.692740 eV Total energy + Delta-G solvation = -3148.490912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.49423 -38.35327 -36.40465 -34.84783 -32.32035 -31.64323 -29.95490 -29.38367 -27.09468 -26.46738 -24.52994 -22.27301 -22.21105 -21.29269 -19.65610 -18.57258 -16.74118 -16.40678 -15.83406 -15.54925 -15.11632 -14.94640 -14.66862 -14.16711 -13.99472 -13.56011 -13.15592 -12.89035 -12.75891 -12.72177 -12.01756 -11.83550 -11.81602 -11.74935 -11.51999 -11.10703 -11.07631 -10.93491 -10.84455 -10.70002 -10.33909 -10.32130 -10.22772 -10.14516 -10.00729 -9.93994 -9.38275 -8.88487 -8.23491 -7.42653 -6.29551 -3.89597 3.18606 3.27382 3.33016 3.70274 3.98629 4.19666 4.79057 4.83078 4.97976 5.07477 5.14809 5.21077 5.23229 5.38690 5.41677 5.49327 5.56481 5.63738 5.69271 5.73950 5.89857 6.00222 6.01631 6.04723 6.12645 6.17754 6.21296 6.27811 6.35390 6.43991 6.48386 6.54803 6.61671 6.85055 6.92473 6.95712 7.21087 7.31659 7.63075 8.29735 8.56846 9.24889 9.48724 10.09397 10.74238 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034640 B = 0.004192 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.122759 B = 6678.411687 C = 6934.745832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.443 5.443 4 C -0.306 4.306 5 H 0.091 0.909 6 C 0.034 3.966 7 N -0.871 5.871 8 Si 0.915 3.085 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.459 3.541 13 O -0.581 6.581 14 C -0.129 4.129 15 C -0.063 4.063 16 H 0.075 0.925 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.138 4.138 20 C 0.090 3.910 21 H 0.059 0.941 22 O -0.388 6.388 23 C 0.032 3.968 24 C -0.110 4.110 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.267 0.733 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 0.815 13.711 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.162 5.162 4 C -0.434 4.434 5 H 0.109 0.891 6 C -0.169 4.169 7 N -0.509 5.509 8 Si 0.741 3.259 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.247 3.753 13 O -0.466 6.466 14 C -0.170 4.170 15 C -0.082 4.082 16 H 0.094 0.906 17 C -0.158 4.158 18 C -0.152 4.152 19 C -0.176 4.176 20 C 0.033 3.967 21 H 0.077 0.923 22 O -0.307 6.307 23 C -0.065 4.065 24 C -0.148 4.148 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.368 1.068 13.592 14.316 hybrid contribution 0.184 0.215 -0.794 0.842 sum -4.184 1.283 12.798 13.526 Atomic orbital electron populations 1.22206 0.98340 1.00252 1.01437 1.21575 0.91637 0.85641 1.04039 1.43548 1.55787 1.11823 1.05029 1.19435 1.39518 0.95383 0.89030 0.89148 1.25304 0.94675 0.96527 1.00425 1.69929 1.32862 1.15353 1.32787 0.86124 0.78998 0.78328 0.82401 1.20369 1.20863 1.19475 1.20294 0.82219 0.87913 0.84855 1.90461 1.50503 1.18774 1.86813 1.21662 1.02212 0.99038 0.94059 1.20775 1.00841 0.94917 0.91619 0.90620 1.21734 0.98114 0.96124 0.99780 1.21471 1.01671 0.98102 0.93908 1.22033 1.00515 0.97070 0.97934 1.22180 0.98094 0.92662 0.83808 0.92252 1.87897 1.65015 1.59924 1.17894 1.22741 0.94850 0.98779 0.90147 1.21671 1.02644 0.97734 0.92748 0.92554 0.93192 0.93885 0.87013 0.93448 0.92338 0.90370 0.90519 0.88935 0.92992 0.92035 0.92099 0.91365 0.92574 0.94179 0.94318 0.90002 0.91316 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.15 37.16 0.38 -2.60 16 2 C 0.10 2.08 5.43 -4.04 -0.02 2.05 16 3 N -0.44 -11.18 2.56 -114.81 -0.29 -11.47 16 4 C -0.31 -8.49 8.98 -14.93 -0.13 -8.62 16 5 H 0.09 2.63 7.70 -52.48 -0.40 2.23 16 6 C 0.03 0.90 4.92 -17.47 -0.09 0.82 16 7 N -0.87 -23.50 11.33 55.50 0.63 -22.87 16 8 Si 0.91 20.64 29.61 -169.99 -5.03 15.61 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.46 10.99 7.31 -10.98 -0.08 10.91 16 13 O -0.58 -15.62 13.79 5.55 0.08 -15.54 16 14 C -0.13 -2.37 3.78 -27.88 -0.11 -2.48 16 15 C -0.06 -1.03 1.84 -90.62 -0.17 -1.19 16 16 H 0.08 1.37 7.96 -51.93 -0.41 0.96 16 17 C -0.12 -1.94 4.94 -26.73 -0.13 -2.07 16 18 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 19 C -0.14 -1.69 5.54 -26.73 -0.15 -1.83 16 20 C 0.09 1.16 2.61 -26.75 -0.07 1.09 16 21 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 22 O -0.39 -5.04 10.35 -35.23 -0.36 -5.40 16 23 C 0.03 0.30 10.82 101.05 1.09 1.39 16 24 C -0.11 -1.53 4.85 -26.75 -0.13 -1.66 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.73 6.59 -51.93 -0.34 0.39 16 28 H 0.11 2.70 5.34 -51.93 -0.28 2.42 16 29 H 0.05 0.94 6.66 -51.93 -0.35 0.60 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.08 1.37 7.41 -51.93 -0.38 0.98 16 32 H 0.08 1.29 6.53 -51.93 -0.34 0.95 16 33 H 0.09 1.81 5.95 -51.93 -0.31 1.50 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 39 H 0.04 0.35 8.09 -51.92 -0.42 -0.07 16 40 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -30.14 333.39 -7.12 -37.26 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.40 Total: 3.26 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 0.24 Total: -5.88 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.34 Total: -34.34 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.29 Total: -20.94 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.14 -7.12 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331081776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.955 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds