Wall clock time and date at job start Mon Mar 30 2020 01:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47160 * 2 1 4 4 C 1.37095 * 120.00135 * 264.74018 * 3 2 1 5 5 H 1.08003 * 119.99861 * 146.16446 * 4 3 2 6 6 C 1.38952 * 120.00176 * 326.17481 * 4 3 2 7 7 N 1.31414 * 119.99370 * 337.67735 * 6 4 3 8 8 Si 1.86793 * 119.99947 * 157.68191 * 6 4 3 9 9 H 1.48498 * 109.47074 * 90.00007 * 8 6 4 10 10 H 1.48498 * 109.47089 * 209.99406 * 8 6 4 11 11 H 1.48492 * 109.47478 * 329.99859 * 8 6 4 12 12 C 1.34779 * 120.00022 * 84.74711 * 3 2 1 13 13 O 1.21288 * 119.99845 * 179.97438 * 12 3 2 14 14 C 1.50707 * 120.00057 * 359.97438 * 12 3 2 15 15 C 1.52996 * 109.47145 * 179.97438 * 14 12 3 16 16 H 1.09000 * 109.47309 * 305.00177 * 15 14 12 17 17 C 1.53006 * 109.46751 * 65.00029 * 15 14 12 18 18 C 1.53004 * 109.47003 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47148 * 300.00516 * 18 17 15 20 20 C 1.52996 * 109.47631 * 59.99865 * 19 18 17 21 21 H 1.09000 * 109.47091 * 59.99818 * 20 19 18 22 22 O 1.42901 * 109.47339 * 180.02562 * 20 19 18 23 23 C 1.42897 * 113.99747 * 269.99696 * 22 20 19 24 24 C 1.52996 * 109.47157 * 184.99951 * 15 14 12 25 25 H 1.09003 * 109.46694 * 59.99884 * 1 2 3 26 26 H 1.08996 * 109.47705 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47284 * 300.00625 * 1 2 3 28 28 H 1.09002 * 109.47388 * 239.99786 * 2 1 3 29 29 H 1.09003 * 109.46694 * 120.00115 * 2 1 3 30 30 H 0.97000 * 119.99174 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46816 * 59.99755 * 14 12 3 32 32 H 1.08994 * 109.46849 * 300.00466 * 14 12 3 33 33 H 1.08994 * 109.47459 * 299.99626 * 17 15 14 34 34 H 1.09000 * 109.47093 * 60.00015 * 17 15 14 35 35 H 1.09003 * 109.46565 * 59.99848 * 18 17 15 36 36 H 1.08993 * 109.47010 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47031 * 299.99647 * 19 18 17 38 38 H 1.09003 * 109.47146 * 179.97438 * 19 18 17 39 39 H 1.09009 * 109.47344 * 300.00387 * 23 22 20 40 40 H 1.09005 * 109.46933 * 59.99640 * 23 22 20 41 41 H 1.09000 * 109.47395 * 180.02562 * 23 22 20 42 42 H 1.09000 * 109.47195 * 300.00296 * 24 15 14 43 43 H 1.09003 * 109.46914 * 59.99897 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3495 1.9912 -1.1823 5 1 2.1816 3.0506 -1.3088 6 6 2.9008 1.2466 -2.2178 7 7 3.5052 0.1087 -1.9592 8 14 2.7828 1.8630 -3.9771 9 1 3.9652 2.7065 -4.2864 10 1 2.7446 0.7049 -4.9058 11 1 1.5451 2.6675 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5470 3.1955 1.1623 14 6 1.7779 1.3818 2.4619 15 6 2.0096 2.3544 3.6200 16 1 3.0375 2.7160 3.5907 17 6 1.0487 3.5382 3.4918 18 6 1.2800 4.5105 4.6503 19 6 1.0295 3.7916 5.9774 20 6 1.9903 2.6079 6.1056 21 1 3.0182 2.9695 6.0767 22 8 1.7559 1.9360 7.3448 23 6 2.5350 2.4359 8.4334 24 6 1.7594 1.6358 4.9474 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8898 -0.4113 -2.6821 31 1 2.3992 0.4971 2.6010 32 1 0.7284 1.0885 2.4377 33 1 1.2270 4.0501 2.5463 34 1 0.0209 3.1766 3.5211 35 1 2.3079 4.8721 4.6214 36 1 0.5952 5.3536 4.5592 37 1 0.0016 3.4300 6.0063 38 1 1.1947 4.4842 6.8027 39 1 3.5947 2.3251 8.2028 40 1 2.3058 3.4899 8.5904 41 1 2.2995 1.8738 9.3371 42 1 0.7315 1.2743 4.9767 43 1 2.4439 0.7925 5.0386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331081776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:42 Heat of formation + Delta-G solvation = -120.640270 kcal Electronic energy + Delta-G solvation = -21687.939253 eV Core-core repulsion = 18538.692740 eV Total energy + Delta-G solvation = -3149.246513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90973 -39.79774 -37.62182 -36.67147 -34.10387 -33.12821 -31.18825 -30.96293 -28.60866 -27.27420 -26.36498 -23.92742 -23.32191 -22.59434 -20.86715 -20.30084 -18.68333 -17.71918 -17.29538 -16.85750 -16.55792 -16.23397 -15.95833 -15.87458 -15.35545 -14.87319 -14.49183 -14.46400 -14.20248 -13.85053 -13.59169 -13.51981 -13.17955 -12.95909 -12.81898 -12.69426 -12.59482 -12.43733 -12.22032 -12.09904 -11.91837 -11.84806 -11.76475 -11.38122 -11.30609 -11.25367 -10.84462 -10.35924 -10.13207 -9.40162 -8.31757 -5.99918 1.36972 1.41253 1.53798 2.12245 2.31351 2.75988 3.04901 3.20943 3.72387 3.79841 4.01011 4.13685 4.15992 4.26992 4.32850 4.41891 4.52470 4.53164 4.56600 4.61717 4.64248 4.69632 4.72250 4.77641 4.88203 4.90175 4.94445 5.03188 5.08824 5.10310 5.25281 5.29874 5.34581 5.36481 5.47972 5.55373 5.60028 5.63810 6.24331 6.31444 6.59145 7.23944 7.55785 8.16056 8.70398 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034640 B = 0.004192 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.122759 B = 6678.411687 C = 6934.745832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.458 5.458 4 C -0.341 4.341 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.889 5.889 8 Si 0.977 3.023 9 H -0.279 1.279 10 H -0.267 1.267 11 H -0.269 1.269 12 C 0.445 3.555 13 O -0.621 6.621 14 C -0.117 4.117 15 C -0.057 4.057 16 H 0.051 0.949 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.130 4.130 20 C 0.091 3.909 21 H 0.059 0.941 22 O -0.403 6.403 23 C 0.024 3.976 24 C -0.102 4.102 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.273 0.727 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 -0.095 15.045 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.177 5.177 4 C -0.469 4.469 5 H 0.080 0.920 6 C -0.200 4.200 7 N -0.528 5.528 8 Si 0.801 3.199 9 H -0.205 1.205 10 H -0.192 1.192 11 H -0.193 1.193 12 C 0.235 3.765 13 O -0.508 6.508 14 C -0.157 4.157 15 C -0.076 4.076 16 H 0.070 0.930 17 C -0.155 4.155 18 C -0.147 4.147 19 C -0.168 4.168 20 C 0.033 3.967 21 H 0.077 0.923 22 O -0.323 6.323 23 C -0.072 4.072 24 C -0.140 4.140 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.387 0.127 14.940 15.881 hybrid contribution 0.552 0.502 -1.178 1.394 sum -4.834 0.630 13.762 14.600 Atomic orbital electron populations 1.22096 0.95438 1.02375 1.01212 1.21672 0.94009 0.83684 1.03639 1.43840 1.56066 1.13047 1.04773 1.19376 1.41552 0.94761 0.91200 0.92002 1.26013 0.93711 0.96626 1.03637 1.69994 1.32697 1.15994 1.34066 0.85195 0.78683 0.78201 0.77821 1.20529 1.19154 1.19330 1.21265 0.81246 0.87589 0.86368 1.90433 1.52050 1.20657 1.87667 1.21627 1.03532 0.99196 0.91375 1.20690 0.99543 0.94855 0.92503 0.93024 1.21642 0.98587 0.96370 0.98943 1.21414 1.01579 0.97951 0.93720 1.21958 1.00454 0.96986 0.97355 1.22098 0.98282 0.92473 0.83823 0.92318 1.87861 1.65766 1.60394 1.18272 1.22960 0.94833 0.99711 0.89701 1.21547 1.03216 0.97747 0.91473 0.94266 0.89807 0.92606 0.89434 0.91677 0.91778 0.89231 0.88333 0.93036 0.91882 0.92781 0.90942 0.91041 0.90836 0.93732 0.93296 0.88279 0.90458 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 10.15 71.98 0.73 -4.58 16 2 C 0.09 4.02 5.43 86.38 0.47 4.49 16 3 N -0.46 -23.64 2.56 -635.52 -1.63 -25.26 16 4 C -0.34 -19.59 8.98 84.04 0.75 -18.84 16 5 H 0.06 3.81 7.70 -2.91 -0.02 3.79 16 6 C 0.00 0.11 4.92 84.93 0.42 0.53 16 7 N -0.89 -48.30 11.33 21.66 0.25 -48.05 16 8 Si 0.98 42.77 29.61 68.60 2.03 44.80 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 C 0.44 21.89 7.31 87.66 0.64 22.53 16 13 O -0.62 -35.04 13.79 -3.05 -0.04 -35.08 16 14 C -0.12 -4.22 3.78 29.85 0.11 -4.11 16 15 C -0.06 -1.84 1.84 -10.79 -0.02 -1.86 16 16 H 0.05 1.91 7.96 -2.39 -0.02 1.89 16 17 C -0.12 -3.80 4.94 30.60 0.15 -3.64 16 18 C -0.11 -2.83 5.92 30.60 0.18 -2.65 16 19 C -0.13 -2.87 5.54 30.59 0.17 -2.70 16 20 C 0.09 2.16 2.61 30.58 0.08 2.24 16 21 H 0.06 1.39 7.79 -2.39 -0.02 1.38 16 22 O -0.40 -9.41 10.35 -148.98 -1.54 -10.95 16 23 C 0.02 0.40 10.82 113.37 1.23 1.62 16 24 C -0.10 -2.64 4.85 30.58 0.15 -2.49 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.05 1.77 6.59 -2.39 -0.02 1.76 16 28 H 0.09 4.24 5.34 -2.39 -0.01 4.23 16 29 H 0.06 2.51 6.66 -2.39 -0.02 2.50 16 30 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.09 3.02 7.41 -2.39 -0.02 3.00 16 32 H 0.10 3.11 6.53 -2.39 -0.02 3.09 16 33 H 0.05 2.10 5.95 -2.39 -0.01 2.08 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.39 7.87 -2.39 -0.02 1.38 16 39 H 0.04 0.69 8.09 -2.38 -0.02 0.67 16 40 H 0.05 0.70 7.87 -2.38 -0.02 0.68 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.18 333.39 5.10 -62.08 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.97 Total: 21.94 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.06 Total: -9.47 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.38 Total: -73.32 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -1.58 Total: -46.03 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -67.18 5.10 -62.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331081776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.562 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds