Wall clock time and date at job start Mon Mar 30 2020 01:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46754 * 2 1 4 4 C 1.37100 * 120.00009 * 264.76884 * 3 2 1 5 5 H 1.07998 * 119.99966 * 138.85570 * 4 3 2 6 6 C 1.38950 * 120.00018 * 318.85813 * 4 3 2 7 7 N 1.31413 * 119.99860 * 341.83197 * 6 4 3 8 8 Si 1.86799 * 120.00354 * 161.83535 * 6 4 3 9 9 H 1.48497 * 109.47209 * 59.99110 * 8 6 4 10 10 H 1.48494 * 109.47415 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46681 * 299.99835 * 8 6 4 12 12 C 1.34780 * 119.99956 * 84.77399 * 3 2 1 13 13 O 1.21293 * 119.99640 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00141 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47420 * 180.02562 * 14 12 3 16 16 H 1.09004 * 109.46864 * 305.00452 * 15 14 12 17 17 C 1.52995 * 109.46893 * 64.99804 * 15 14 12 18 18 C 1.53005 * 109.47191 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46752 * 299.99959 * 18 17 15 20 20 C 1.53006 * 109.46898 * 60.00204 * 19 18 17 21 21 H 1.09000 * 109.46776 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47417 * 59.99870 * 20 19 18 23 23 C 1.42903 * 114.00131 * 89.99794 * 22 20 19 24 24 C 1.52995 * 109.47349 * 185.00098 * 15 14 12 25 25 H 1.09006 * 109.47345 * 300.00040 * 1 2 3 26 26 H 1.09000 * 109.47506 * 59.99826 * 1 2 3 27 27 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46476 * 240.00125 * 2 1 3 29 29 H 1.08999 * 109.46843 * 119.99824 * 2 1 3 30 30 H 0.96999 * 120.00015 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46794 * 59.99924 * 14 12 3 32 32 H 1.08998 * 109.47110 * 300.00593 * 14 12 3 33 33 H 1.09002 * 109.47613 * 299.99995 * 17 15 14 34 34 H 1.08997 * 109.47474 * 60.00457 * 17 15 14 35 35 H 1.08991 * 109.47416 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.46875 * 59.99677 * 18 17 15 37 37 H 1.08996 * 109.47384 * 300.00030 * 19 18 17 38 38 H 1.09006 * 109.47011 * 179.97438 * 19 18 17 39 39 H 1.08994 * 109.46680 * 60.00106 * 23 22 20 40 40 H 1.09000 * 109.46619 * 179.97438 * 23 22 20 41 41 H 1.08994 * 109.47051 * 300.00152 * 23 22 20 42 42 H 1.08996 * 109.47150 * 300.00021 * 24 15 14 43 43 H 1.09001 * 109.47058 * 59.99773 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0742 3.0218 -1.3535 6 6 3.0370 1.2842 -2.1606 7 7 3.6789 0.1818 -1.8452 8 14 3.0500 1.9006 -3.9239 9 1 3.6535 3.2566 -3.9699 10 1 3.8490 0.9747 -4.7661 11 1 1.6579 1.9608 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5473 3.1954 1.1624 14 6 1.7789 1.3815 2.4620 15 6 2.0099 2.3543 3.6200 16 1 3.0375 2.7167 3.5906 17 6 1.0481 3.5372 3.4918 18 6 1.2795 4.5104 4.6496 19 6 1.0302 3.7920 5.9772 20 6 1.9921 2.6090 6.1054 21 1 1.8149 2.0975 7.0514 22 8 3.3393 3.0841 6.0664 23 6 3.8779 3.4104 7.3491 24 6 1.7604 1.6356 4.9474 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1597 -0.3118 -2.5280 31 1 2.4004 0.4968 2.6007 32 1 0.7294 1.0881 2.4381 33 1 1.2259 4.0493 2.5462 34 1 0.0205 3.1749 3.5212 35 1 0.5940 5.3529 4.5586 36 1 2.3071 4.8727 4.6198 37 1 0.0027 3.4297 6.0070 38 1 1.1955 4.4852 6.8021 39 1 3.8676 2.5242 7.9836 40 1 4.9031 3.7624 7.2338 41 1 3.2741 4.1930 7.8083 42 1 0.7328 1.2732 4.9768 43 1 2.4456 0.7928 5.0387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331081777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:44 Heat of formation + Delta-G solvation = -101.710479 kcal Electronic energy + Delta-G solvation = -21912.759895 eV Core-core repulsion = 18764.334239 eV Total energy + Delta-G solvation = -3148.425656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.51452 -38.28820 -36.01360 -34.72533 -32.25094 -31.57249 -30.00763 -29.31882 -27.07114 -26.43421 -24.45705 -22.28230 -22.21757 -21.23670 -19.37615 -18.51720 -16.66936 -16.16103 -15.68589 -15.58975 -15.23739 -14.94086 -14.56160 -14.08118 -13.93669 -13.38062 -13.01550 -12.84424 -12.73093 -12.42393 -12.07044 -11.90168 -11.76902 -11.63353 -11.45654 -11.13524 -11.03674 -10.99226 -10.87437 -10.62274 -10.31695 -10.25283 -10.15566 -10.05097 -9.83370 -9.70366 -9.30868 -8.80849 -8.14324 -7.29349 -6.22644 -3.90505 3.25428 3.30093 3.33817 3.86508 4.07830 4.24728 4.81480 4.86293 4.97184 5.09866 5.17218 5.27759 5.30546 5.44791 5.50343 5.60074 5.62769 5.70937 5.77207 5.80340 5.92628 6.00705 6.07622 6.09277 6.16711 6.19642 6.28759 6.30082 6.41435 6.54355 6.60808 6.63447 6.71081 6.94795 7.02259 7.09385 7.29918 7.32471 7.66997 8.40948 8.64733 9.32422 9.53061 10.17388 10.82732 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.004540 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.184081 B = 6166.058665 C = 6332.263851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.447 5.447 4 C -0.307 4.307 5 H 0.085 0.915 6 C 0.037 3.963 7 N -0.874 5.874 8 Si 0.916 3.084 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.465 3.535 13 O -0.575 6.575 14 C -0.132 4.132 15 C -0.061 4.061 16 H 0.084 0.916 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.139 4.139 20 C 0.091 3.909 21 H 0.054 0.946 22 O -0.374 6.374 23 C 0.031 3.969 24 C -0.112 4.112 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.266 0.734 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 0.097 14.592 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.167 5.167 4 C -0.435 4.435 5 H 0.103 0.897 6 C -0.166 4.166 7 N -0.512 5.512 8 Si 0.743 3.257 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.254 3.746 13 O -0.459 6.459 14 C -0.173 4.173 15 C -0.080 4.080 16 H 0.102 0.898 17 C -0.154 4.154 18 C -0.148 4.148 19 C -0.177 4.177 20 C 0.033 3.967 21 H 0.072 0.928 22 O -0.292 6.292 23 C -0.066 4.066 24 C -0.149 4.149 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.144 0.527 14.296 15.203 hybrid contribution -0.102 -0.034 -0.535 0.546 sum -5.246 0.493 13.761 14.735 Atomic orbital electron populations 1.22228 0.98444 1.00177 1.01459 1.21413 0.91434 0.85873 1.03273 1.43465 1.56546 1.11675 1.04972 1.19308 1.34592 0.98387 0.91191 0.89686 1.25398 0.94186 0.96624 1.00428 1.69925 1.29731 1.17680 1.33911 0.86171 0.78256 0.78812 0.82464 1.19809 1.21070 1.19998 1.20391 0.81488 0.87840 0.84891 1.90473 1.49825 1.18762 1.86815 1.21727 1.01805 0.99261 0.94488 1.20733 1.01500 0.94515 0.91256 0.89802 1.21681 0.97552 0.96369 0.99793 1.21390 1.01981 0.97696 0.93715 1.22032 0.99145 0.97859 0.98667 1.22130 0.82360 0.94129 0.98059 0.92839 1.88026 1.27866 1.85397 1.27932 1.22741 0.99193 0.98748 0.85928 1.21740 1.01427 0.97264 0.94497 0.93856 0.92540 0.93275 0.88076 0.93452 0.92385 0.90514 0.90832 0.89256 0.93570 0.92897 0.91352 0.91459 0.92626 0.94512 0.89915 0.94504 0.91071 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.15 37.16 0.38 -2.62 16 2 C 0.10 2.30 5.41 -4.04 -0.02 2.28 16 3 N -0.45 -11.51 2.50 -114.81 -0.29 -11.79 16 4 C -0.31 -8.67 8.84 -14.93 -0.13 -8.80 16 5 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -24.21 11.61 55.50 0.64 -23.56 16 8 Si 0.92 21.08 29.59 -169.99 -5.03 16.05 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.47 11.52 7.31 -10.99 -0.08 11.44 16 13 O -0.58 -16.08 13.88 5.55 0.08 -16.01 16 14 C -0.13 -2.51 3.78 -27.89 -0.11 -2.61 16 15 C -0.06 -1.06 1.69 -90.62 -0.15 -1.22 16 16 H 0.08 1.72 7.49 -51.93 -0.39 1.34 16 17 C -0.12 -1.98 4.94 -26.73 -0.13 -2.11 16 18 C -0.11 -1.61 5.78 -26.73 -0.15 -1.76 16 19 C -0.14 -1.67 5.63 -26.73 -0.15 -1.82 16 20 C 0.09 1.14 2.92 -26.71 -0.08 1.06 16 21 H 0.05 0.56 7.78 -51.93 -0.40 0.16 16 22 O -0.37 -5.31 9.00 -35.23 -0.32 -5.62 16 23 C 0.03 0.32 10.82 101.05 1.09 1.41 16 24 C -0.11 -1.52 4.95 -26.71 -0.13 -1.65 16 25 H 0.04 0.73 6.60 -51.93 -0.34 0.39 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.46 5.76 -51.93 -0.30 2.16 16 29 H 0.05 0.96 6.66 -51.93 -0.35 0.61 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.08 1.40 7.41 -51.93 -0.38 1.01 16 32 H 0.07 1.25 6.54 -51.93 -0.34 0.91 16 33 H 0.09 1.85 5.95 -51.93 -0.31 1.54 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.60 7.87 -51.93 -0.41 0.19 16 39 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -31.41 332.02 -7.04 -38.46 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.38 Total: 2.96 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 0.24 Total: -5.48 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.36 Total: -35.36 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.24 Total: -21.63 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.41 -7.04 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331081777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.253 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds